BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419405.2.3
(1600 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BH848121.1|BH848121 SALK_067532.56.00.x Arabidopsis thal... 46 0.019
emb|AX508361.1| Sequence 3056 from Patent WO0216655 46 0.019
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 46 0.019
emb|AL049640.1|ATT20K18 Arabidopsis thaliana DNA chromosome... 46 0.019
emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosom... 46 0.019
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 46 0.019
gb|AU238503.1|AU238503 AU238503 RAFL17 Arabidopsis thaliana... 44 0.074
gb|BT006095.1| Arabidopsis thaliana clone U50301 unknown pr... 44 0.074
dbj|AB010073.1| Arabidopsis thaliana genomic DNA, chromosom... 44 0.074
dbj|AK117661.1| Arabidopsis thaliana At5g61290 mRNA for unk... 44 0.074
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 44 0.074
ref|NM_125522.2| Arabidopsis thaliana disulfide oxidoreduct... 44 0.074
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 44 0.074
gb|DR749623.1|DR749623 72-L020255-065-002-H09-SeLB MPIZ-ADI... 42 0.29
gb|BT009675.1| Arabidopsis thaliana At2g31210 mRNA, complet... 42 0.29
emb|AJ519809.1|ATH519809 Arabidopsis thaliana mRNA for puta... 42 0.29
gb|AC006593.5| Arabidopsis thaliana chromosome 2 clone F16D... 42 0.29
dbj|AK118441.1| Arabidopsis thaliana At2g31210 mRNA for put... 42 0.29
ref|NM_128677.2| Arabidopsis thaliana DNA binding / transcr... 42 0.29
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 42 0.29
>gb|BH848121.1|BH848121 SALK_067532.56.00.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_067532.56.00.x,
DNA sequence
Length = 332
Score = 46.1 bits (23), Expect = 0.019
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 200 aatgaagatgatgatgatgataa 222
|||||||||||||||||||||||
Sbjct: 110 aatgaagatgatgatgatgataa 88
>emb|AX508361.1| Sequence 3056 from Patent WO0216655
Length = 1232
Score = 46.1 bits (23), Expect = 0.019
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 200 aatgaagatgatgatgatgataa 222
|||||||||||||||||||||||
Sbjct: 473 aatgaagatgatgatgatgataa 451
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 46.1 bits (23), Expect = 0.019
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 200 aatgaagatgatgatgatgataa 222
|||||||||||||||||||||||
Sbjct: 3417141 aatgaagatgatgatgatgataa 3417163
>emb|AL049640.1|ATT20K18 Arabidopsis thaliana DNA chromosome 4, BAC clone T20K18 (ESSA project)
Length = 79375
Score = 46.1 bits (23), Expect = 0.019
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 200 aatgaagatgatgatgatgataa 222
|||||||||||||||||||||||
Sbjct: 34919 aatgaagatgatgatgatgataa 34941
>emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34
Length = 196107
Score = 46.1 bits (23), Expect = 0.019
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 200 aatgaagatgatgatgatgataa 222
|||||||||||||||||||||||
Sbjct: 176531 aatgaagatgatgatgatgataa 176553
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 46.1 bits (23), Expect = 0.019
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 200 aatgaagatgatgatgatgataa 222
|||||||||||||||||||||||
Sbjct: 7504400 aatgaagatgatgatgatgataa 7504422
>gb|AU238503.1|AU238503 AU238503 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-32-E19 5',
mRNA sequence
Length = 643
Score = 44.1 bits (22), Expect = 0.074
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 199 gaatgaagatgatgatgatgat 220
||||||||||||||||||||||
Sbjct: 467 gaatgaagatgatgatgatgat 488
>gb|BT006095.1| Arabidopsis thaliana clone U50301 unknown protein (At5g61290) mRNA,
complete cds
Length = 1417
Score = 44.1 bits (22), Expect = 0.074
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 199 gaatgaagatgatgatgatgat 220
||||||||||||||||||||||
Sbjct: 426 gaatgaagatgatgatgatgat 447
>dbj|AB010073.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFB13
Length = 80376
Score = 44.1 bits (22), Expect = 0.074
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 199 gaatgaagatgatgatgatgat 220
||||||||||||||||||||||
Sbjct: 19582 gaatgaagatgatgatgatgat 19603
>dbj|AK117661.1| Arabidopsis thaliana At5g61290 mRNA for unknown protein, complete
cds, clone: RAFL17-32-E19
Length = 1578
Score = 44.1 bits (22), Expect = 0.074
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 199 gaatgaagatgatgatgatgat 220
||||||||||||||||||||||
Sbjct: 467 gaatgaagatgatgatgatgat 488
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 44.1 bits (22), Expect = 0.074
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 199 gaatgaagatgatgatgatgat 220
||||||||||||||||||||||
Sbjct: 21884337 gaatgaagatgatgatgatgat 21884358
>ref|NM_125522.2| Arabidopsis thaliana disulfide oxidoreductase/ monooxygenase/
oxidoreductase AT5G61290 mRNA, complete cds
Length = 2046
Score = 44.1 bits (22), Expect = 0.074
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 199 gaatgaagatgatgatgatgat 220
||||||||||||||||||||||
Sbjct: 467 gaatgaagatgatgatgatgat 488
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 44.1 bits (22), Expect = 0.074
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 199 gaatgaagatgatgatgatgat 220
||||||||||||||||||||||
Sbjct: 24666250 gaatgaagatgatgatgatgat 24666271
>gb|DR749623.1|DR749623 72-L020255-065-002-H09-SeLB MPIZ-ADIS-065g Arabidopsis thaliana
cDNA clone 002-H09, mRNA sequence
Length = 929
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 200 aatgaagatgatgatgatgat 220
|||||||||||||||||||||
Sbjct: 490 aatgaagatgatgatgatgat 470
>gb|BT009675.1| Arabidopsis thaliana At2g31210 mRNA, complete cds
Length = 1287
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 200 aatgaagatgatgatgatgat 220
|||||||||||||||||||||
Sbjct: 892 aatgaagatgatgatgatgat 912
>emb|AJ519809.1|ATH519809 Arabidopsis thaliana mRNA for putative bHLH transcription factor
Length = 1287
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 200 aatgaagatgatgatgatgat 220
|||||||||||||||||||||
Sbjct: 892 aatgaagatgatgatgatgat 912
>gb|AC006593.5| Arabidopsis thaliana chromosome 2 clone F16D14 map nga361, complete
sequence
Length = 84872
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 200 aatgaagatgatgatgatgat 220
|||||||||||||||||||||
Sbjct: 16431 aatgaagatgatgatgatgat 16451
>dbj|AK118441.1| Arabidopsis thaliana At2g31210 mRNA for putative bHLH transcription
factor (bHLH091), complete cds, clone: RAFL19-68-P06
Length = 1693
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 200 aatgaagatgatgatgatgat 220
|||||||||||||||||||||
Sbjct: 1160 aatgaagatgatgatgatgat 1180
>ref|NM_128677.2| Arabidopsis thaliana DNA binding / transcription factor AT2G31210
mRNA, complete cds
Length = 1693
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 200 aatgaagatgatgatgatgat 220
|||||||||||||||||||||
Sbjct: 1160 aatgaagatgatgatgatgat 1180
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 200 aatgaagatgatgatgatgat 220
|||||||||||||||||||||
Sbjct: 13304718 aatgaagatgatgatgatgat 13304738
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 562,513
Number of Sequences: 1013581
Number of extensions: 562513
Number of successful extensions: 77315
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75549
Number of HSP's gapped (non-prelim): 1679
length of query: 1600
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1579
effective length of database: 887,655,671
effective search space: 1401608304509
effective search space used: 1401608304509
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)