BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419390.2.1
(1603 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 70 1e-009
emb|AL133421.1|ATF13G24 Arabidopsis thaliana DNA chromosome... 70 1e-009
emb|AL357612.1|ATT22D6 Arabidopsis thaliana DNA chromosome ... 70 1e-009
ref|NM_120884.1| Arabidopsis thaliana DNA binding / nucleic... 70 1e-009
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 70 1e-009
gb|BP588189.1|BP588189 BP588189 RAFL15 Arabidopsis thaliana... 42 0.29
gb|AF128393.1|T1J1 Arabidopsis thaliana BAC T1J1 42 0.29
gb|AF220201.1|AF220201 Arabidopsis thaliana DES-1-like tran... 42 0.29
emb|AX059537.1| Sequence 270 from Patent WO0055325 42 0.29
emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, shor... 42 0.29
emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosom... 42 0.29
dbj|AK221700.1| Arabidopsis thaliana mRNA for putative fatt... 42 0.29
ref|NM_116731.2| Arabidopsis thaliana DES-1-LIKE; oxidoredu... 42 0.29
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 42 0.29
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 69.9 bits (35), Expect = 1e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 837 gcttcagtcaccttcttgttacaggtcgtgcaagcacggtaccacat 883
|||||||| || ||||||||||||||| |||||||||||||||||||
Sbjct: 2393340 gcttcagtaactttcttgttacaggtcttgcaagcacggtaccacat 2393294
Score = 60.0 bits (30), Expect = 1e-006
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 966 gtgatgtgagacagaaaaactctatcagaatacatgga 1003
||||||||||| ||||||||||| ||||||||||||||
Sbjct: 2393133 gtgatgtgagaaagaaaaactctgtcagaatacatgga 2393096
>emb|AL133421.1|ATF13G24 Arabidopsis thaliana DNA chromosome 5, BAC clone F13G24 (ESSA project)
Length = 88095
Score = 69.9 bits (35), Expect = 1e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 837 gcttcagtcaccttcttgttacaggtcgtgcaagcacggtaccacat 883
|||||||| || ||||||||||||||| |||||||||||||||||||
Sbjct: 81214 gcttcagtaactttcttgttacaggtcttgcaagcacggtaccacat 81168
Score = 60.0 bits (30), Expect = 1e-006
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 966 gtgatgtgagacagaaaaactctatcagaatacatgga 1003
||||||||||| ||||||||||| ||||||||||||||
Sbjct: 81007 gtgatgtgagaaagaaaaactctgtcagaatacatgga 80970
>emb|AL357612.1|ATT22D6 Arabidopsis thaliana DNA chromosome 5, BAC clone T22D6 (ESSA
project)
Length = 89988
Score = 69.9 bits (35), Expect = 1e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 837 gcttcagtcaccttcttgttacaggtcgtgcaagcacggtaccacat 883
|||||||| || ||||||||||||||| |||||||||||||||||||
Sbjct: 972 gcttcagtaactttcttgttacaggtcttgcaagcacggtaccacat 926
Score = 60.0 bits (30), Expect = 1e-006
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 966 gtgatgtgagacagaaaaactctatcagaatacatgga 1003
||||||||||| ||||||||||| ||||||||||||||
Sbjct: 765 gtgatgtgagaaagaaaaactctgtcagaatacatgga 728
>ref|NM_120884.1| Arabidopsis thaliana DNA binding / nucleic acid binding AT5G08020
mRNA, complete cds
Length = 1815
Score = 69.9 bits (35), Expect = 1e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 837 gcttcagtcaccttcttgttacaggtcgtgcaagcacggtaccacat 883
|||||||| || ||||||||||||||| |||||||||||||||||||
Sbjct: 1433 gcttcagtaactttcttgttacaggtcttgcaagcacggtaccacat 1387
Score = 63.9 bits (32), Expect = 8e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 924 ctgaagaaaacaggcttttcctggcccatagcaggatcactggtgatgtgagacagaaaa 983
|||||||| |||||||| |||| ||| | || |||| || ||||||||||| ||||||
Sbjct: 1346 ctgaagaatacaggcttctcctcgcctaaagagggattgcttgtgatgtgagaaagaaaa 1287
Query: 984 actctatcagaatacatgga 1003
||||| ||||||||||||||
Sbjct: 1286 actctgtcagaatacatgga 1267
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 69.9 bits (35), Expect = 1e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 837 gcttcagtcaccttcttgttacaggtcgtgcaagcacggtaccacat 883
|||||||| || ||||||||||||||| |||||||||||||||||||
Sbjct: 2574304 gcttcagtaactttcttgttacaggtcttgcaagcacggtaccacat 2574258
Score = 60.0 bits (30), Expect = 1e-006
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 966 gtgatgtgagacagaaaaactctatcagaatacatgga 1003
||||||||||| ||||||||||| ||||||||||||||
Sbjct: 2574097 gtgatgtgagaaagaaaaactctgtcagaatacatgga 2574060
>gb|BP588189.1|BP588189 BP588189 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-45-G10 3',
mRNA sequence
Length = 438
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 117 aaatactaaaatagaataaaa 137
|||||||||||||||||||||
Sbjct: 177 aaatactaaaatagaataaaa 197
>gb|AF128393.1|T1J1 Arabidopsis thaliana BAC T1J1
Length = 53778
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 117 aaatactaaaatagaataaaa 137
|||||||||||||||||||||
Sbjct: 35037 aaatactaaaatagaataaaa 35017
>gb|AF220201.1|AF220201 Arabidopsis thaliana DES-1-like transmembrane protein mRNA, complete
cds
Length = 1256
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 117 aaatactaaaatagaataaaa 137
|||||||||||||||||||||
Sbjct: 1153 aaatactaaaatagaataaaa 1133
>emb|AX059537.1| Sequence 270 from Patent WO0055325
Length = 49885
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 117 aaatactaaaatagaataaaa 137
|||||||||||||||||||||
Sbjct: 21847 aaatactaaaatagaataaaa 21827
>emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, short arm
Length = 3052119
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 117 aaatactaaaatagaataaaa 137
|||||||||||||||||||||
Sbjct: 2509787 aaatactaaaatagaataaaa 2509767
>emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 14
Length = 198563
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 117 aaatactaaaatagaataaaa 137
|||||||||||||||||||||
Sbjct: 42984 aaatactaaaatagaataaaa 42964
>dbj|AK221700.1| Arabidopsis thaliana mRNA for putative fatty acid desaturase,
complete cds, clone: RAFL15-45-G10
Length = 1317
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 117 aaatactaaaatagaataaaa 137
|||||||||||||||||||||
Sbjct: 1131 aaatactaaaatagaataaaa 1111
>ref|NM_116731.2| Arabidopsis thaliana DES-1-LIKE; oxidoreductase AT4G04930
(DES-1-LIKE) mRNA, complete cds
Length = 1246
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 117 aaatactaaaatagaataaaa 137
|||||||||||||||||||||
Sbjct: 1153 aaatactaaaatagaataaaa 1133
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 42.1 bits (21), Expect = 0.29
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 117 aaatactaaaatagaataaaa 137
|||||||||||||||||||||
Sbjct: 2510967 aaatactaaaatagaataaaa 2510947
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 762,923
Number of Sequences: 1013581
Number of extensions: 762923
Number of successful extensions: 55302
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54055
Number of HSP's gapped (non-prelim): 1247
length of query: 1603
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1582
effective length of database: 887,655,671
effective search space: 1404271271522
effective search space used: 1404271271522
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)