BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419355.2.1
(1174 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY084858.1| Arabidopsis thaliana clone 119620 mRNA, comp... 135 2e-029
emb|BX819956.1|CNS0A8JM Arabidopsis thaliana Full-length cD... 135 2e-029
emb|BX820944.1|CNS0A8M5 Arabidopsis thaliana Full-length cD... 135 2e-029
emb|BX818964.1|CNS0A8TR Arabidopsis thaliana Full-length cD... 135 2e-029
ref|NM_129009.2| Arabidopsis thaliana ATP binding / ATPase/... 135 2e-029
ref|NM_201871.1| Arabidopsis thaliana ATP binding / ATPase/... 135 2e-029
gb|AV557699.1|AV557699 AV557699 Arabidopsis thaliana green ... 129 1e-027
emb|BX821969.1|CNS0A8BH Arabidopsis thaliana Full-length cD... 121 3e-025
emb|BX820132.1|CNS0A8FZ Arabidopsis thaliana Full-length cD... 119 1e-024
emb|BX819896.1|CNS0A8GP Arabidopsis thaliana Full-length cD... 113 7e-023
gb|BX837367.1|BX837367 BX837367 Arabidopsis thaliana Adult ... 103 7e-020
gb|CK121475.1|CK121475 203a04.p1 AtM1 Arabidopsis thaliana ... 101 3e-019
gb|AC004077.3| Arabidopsis thaliana chromosome 2 clone T31E... 70 9e-010
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 70 9e-010
gb|AV542767.1|AV542767 AV542767 Arabidopsis thaliana roots ... 62 2e-007
gb|BZ661252.1|BZ661252 SALK_024718.46.45.x Arabidopsis thal... 54 6e-005
emb|AJ588920.1| Arabidopsis thaliana T-DNA flanking sequenc... 54 6e-005
gb|BP565092.1|BP565092 BP565092 RAFL14 Arabidopsis thaliana... 48 0.003
gb|AI998100.1|AI998100 701672185 A. thaliana, Columbia Col-... 46 0.014
gb|AV786944.1|AV786944 AV786944 RAFL6 Arabidopsis thaliana ... 46 0.014
gb|AV794282.1|AV794282 AV794282 RAFL8 Arabidopsis thaliana ... 46 0.014
gb|BP567253.1|BP567253 BP567253 RAFL14 Arabidopsis thaliana... 46 0.014
gb|BP590335.1|BP590335 BP590335 RAFL15 Arabidopsis thaliana... 46 0.014
gb|BP595875.1|BP595875 BP595875 RAFL15 Arabidopsis thaliana... 46 0.014
gb|BP630454.1|BP630454 BP630454 RAFL17 Arabidopsis thaliana... 46 0.014
gb|BP666082.1|BP666082 BP666082 RAFL21 Arabidopsis thaliana... 46 0.014
gb|AV545465.1|AV545465 AV545465 Arabidopsis thaliana roots ... 44 0.054
gb|BP626010.1|BP626010 BP626010 RAFL17 Arabidopsis thaliana... 44 0.054
>gb|AY084858.1| Arabidopsis thaliana clone 119620 mRNA, complete sequence
Length = 1361
Score = 135 bits (68), Expect = 2e-029
Identities = 327/410 (79%), Gaps = 5/410 (1%)
Strand = Plus / Plus
Query: 28 ctccatggaaaggcatcttactttttggccccccaggaacaggaaagacaatgctggcaa 87
||||||||||||| || | |||||||| || || || || |||||||| ||||| ||||
Sbjct: 469 ctccatggaaaggaattcttctttttggtcctcctggtaccggaaagactatgcttgcaa 528
Query: 88 aagcggtcgctactgagtgcaaaaccaccttcttcaacatttcagcatcatcaattgtca 147
| || || ||||| |||||||| || || ||||||||||| ||||| ||||| |||| |
Sbjct: 529 aggctgttgctacagagtgcaatacaacattcttcaacatctcagcctcatctgttgtta 588
Query: 148 gcaaatggcgtggagattcagagaagcttgtcaaagttctgtttgagcttgctaggcatc 207
|||||||| | || ||||| |||||| | | | ||||||||| || || ||||||||||
Sbjct: 589 gcaaatggagaggtgattctgagaagttgataagagttctgttcgatctagctaggcatc 648
Query: 208 atgcaccatccacaatattccttgatgaaatagatgctatcatcagccagc---gtggtg 264
||||||| || |||||||| |||||||| || || || ||||| ||||| | ||||||
Sbjct: 649 atgcaccttcgacaatatttcttgatgagatcgacgcgatcataagccaacgtggtggtg 708
Query: 265 aagctcgcagtgagcatgaggctagtcgtcgcttgaagactgagctacttattcagatgg 324
||| |||||||| ||||| ||||| | || | || || ||||| || ||||||||||
Sbjct: 709 aaggccgcagtgaacatgaagctagcaggcgtctcaaaaccgagctgctcattcagatgg 768
Query: 325 atggtttgaca-aagacaaacgacttggtatttgtacttgcagctacaaatcttccctgg 383
|||| || ||| || || || || | |||||||| | ||||| |||||||| ||||||
Sbjct: 769 atgggtt-acagaaaacgaatgagctcgtatttgttttagcagcaacaaatctcccctgg 827
Query: 384 gaattggatgcagccatgctccgccggcttgagaagcggattcttgtacc 433
||| | |||||||| |||||||| || || ||||| || |||||||||||
Sbjct: 828 gaactagatgcagctatgctccggcgtctagagaaacgaattcttgtacc 877
Score = 46.1 bits (23), Expect = 0.014
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 540 tactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacg 598
|||||||||||||| ||||| | | || || |||||||| |||||||||||||||||
Sbjct: 984 tactctggttcagacattcgaatactttgtaaggaagctgcgatgcaaccactgagacg 1042
>emb|BX819956.1|CNS0A8JM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS53ZF07 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1380
Score = 135 bits (68), Expect = 2e-029
Identities = 327/410 (79%), Gaps = 5/410 (1%)
Strand = Plus / Plus
Query: 28 ctccatggaaaggcatcttactttttggccccccaggaacaggaaagacaatgctggcaa 87
||||||||||||| || | |||||||| || || || || |||||||| ||||| ||||
Sbjct: 494 ctccatggaaaggaattcttctttttggtcctcctggtaccggaaagactatgcttgcaa 553
Query: 88 aagcggtcgctactgagtgcaaaaccaccttcttcaacatttcagcatcatcaattgtca 147
| || || ||||| |||||||| || || ||||||||||| ||||| ||||| |||| |
Sbjct: 554 aggctgttgctacagagtgcaatacaacattcttcaacatctcagcctcatctgttgtta 613
Query: 148 gcaaatggcgtggagattcagagaagcttgtcaaagttctgtttgagcttgctaggcatc 207
|||||||| | || ||||| |||||| | | | ||||||||| || || ||||||||||
Sbjct: 614 gcaaatggagaggtgattctgagaagttgataagagttctgttcgatctagctaggcatc 673
Query: 208 atgcaccatccacaatattccttgatgaaatagatgctatcatcagccagc---gtggtg 264
||||||| || |||||||| |||||||| || || || ||||| ||||| | ||||||
Sbjct: 674 atgcaccttcgacaatatttcttgatgagatcgacgcgatcataagccaacgtggtggtg 733
Query: 265 aagctcgcagtgagcatgaggctagtcgtcgcttgaagactgagctacttattcagatgg 324
||| |||||||| ||||| ||||| | || | || || ||||| || ||||||||||
Sbjct: 734 aaggccgcagtgaacatgaagctagcaggcgtctcaaaaccgagctgctcattcagatgg 793
Query: 325 atggtttgaca-aagacaaacgacttggtatttgtacttgcagctacaaatcttccctgg 383
|||| || ||| || || || || | |||||||| | ||||| |||||||| ||||||
Sbjct: 794 atgggtt-acagaaaacgaatgagctcgtatttgttttagcagcaacaaatctcccctgg 852
Query: 384 gaattggatgcagccatgctccgccggcttgagaagcggattcttgtacc 433
||| | |||||||| |||||||| || || ||||| || |||||||||||
Sbjct: 853 gaactagatgcagctatgctccggcgtctagagaaacgaattcttgtacc 902
Score = 46.1 bits (23), Expect = 0.014
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 540 tactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacg 598
|||||||||||||| ||||| | | || || |||||||| |||||||||||||||||
Sbjct: 1009 tactctggttcagacattcgaatactttgtaaggaagctgcgatgcaaccactgagacg 1067
>emb|BX820944.1|CNS0A8M5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH83ZG08 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1284
Score = 135 bits (68), Expect = 2e-029
Identities = 327/410 (79%), Gaps = 5/410 (1%)
Strand = Plus / Plus
Query: 28 ctccatggaaaggcatcttactttttggccccccaggaacaggaaagacaatgctggcaa 87
||||||||||||| || | |||||||| || || || || |||||||| ||||| ||||
Sbjct: 468 ctccatggaaaggaattcttctttttggtcctcctggtaccggaaagactatgcttgcaa 527
Query: 88 aagcggtcgctactgagtgcaaaaccaccttcttcaacatttcagcatcatcaattgtca 147
| || || ||||| |||||||| || || ||||||||||| ||||| ||||| |||| |
Sbjct: 528 aggctgttgctacagagtgcaatacaacattcttcaacatctcagcctcatctgttgtta 587
Query: 148 gcaaatggcgtggagattcagagaagcttgtcaaagttctgtttgagcttgctaggcatc 207
|||||||| | || ||||| |||||| | | | ||||||||| || || ||||||||||
Sbjct: 588 gcaaatggagaggtgattctgagaagttgataagagttctgttcgatctagctaggcatc 647
Query: 208 atgcaccatccacaatattccttgatgaaatagatgctatcatcagccagc---gtggtg 264
||||||| || |||||||| |||||||| || || || ||||| ||||| | ||||||
Sbjct: 648 atgcaccttcgacaatatttcttgatgagatcgacgcgatcataagccaacgtggtggtg 707
Query: 265 aagctcgcagtgagcatgaggctagtcgtcgcttgaagactgagctacttattcagatgg 324
||| |||||||| ||||| ||||| | || | || || ||||| || ||||||||||
Sbjct: 708 aaggccgcagtgaacatgaagctagcaggcgtctcaaaaccgagctgctcattcagatgg 767
Query: 325 atggtttgaca-aagacaaacgacttggtatttgtacttgcagctacaaatcttccctgg 383
|||| || ||| || || || || | |||||||| | ||||| |||||||| ||||||
Sbjct: 768 atgggtt-acagaaaacgaatgagctcgtatttgttttagcagcaacaaatctcccctgg 826
Query: 384 gaattggatgcagccatgctccgccggcttgagaagcggattcttgtacc 433
||| | |||||||| |||||||| || || ||||| || |||||||||||
Sbjct: 827 gaactagatgcagctatgctccggcgtctagagaaacgaattcttgtacc 876
Score = 46.1 bits (23), Expect = 0.014
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 540 tactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacg 598
|||||||||||||| ||||| | | || || |||||||| |||||||||||||||||
Sbjct: 983 tactctggttcagacattcgaatactttgtaaggaagctgcgatgcaaccactgagacg 1041
>emb|BX818964.1|CNS0A8TR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB31ZF12 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1329
Score = 135 bits (68), Expect = 2e-029
Identities = 327/410 (79%), Gaps = 5/410 (1%)
Strand = Plus / Plus
Query: 28 ctccatggaaaggcatcttactttttggccccccaggaacaggaaagacaatgctggcaa 87
||||||||||||| || | |||||||| || || || || |||||||| ||||| ||||
Sbjct: 487 ctccatggaaaggaattcttctttttggtcctcctggtaccggaaagactatgcttgcaa 546
Query: 88 aagcggtcgctactgagtgcaaaaccaccttcttcaacatttcagcatcatcaattgtca 147
| || || ||||| |||||||| || || ||||||||||| ||||| ||||| |||| |
Sbjct: 547 aggctgttgctacagagtgcaatacaacattcttcaacatctcagcctcatctgttgtta 606
Query: 148 gcaaatggcgtggagattcagagaagcttgtcaaagttctgtttgagcttgctaggcatc 207
|||||||| | || ||||| |||||| | | | ||||||||| || || ||||||||||
Sbjct: 607 gcaaatggagaggtgattctgagaagttgataagagttctgttcgatctagctaggcatc 666
Query: 208 atgcaccatccacaatattccttgatgaaatagatgctatcatcagccagc---gtggtg 264
||||||| || |||||||| |||||||| || || || ||||| ||||| | ||||||
Sbjct: 667 atgcaccttcgacaatatttcttgatgagatcgacgcgatcataagccaacgtggtggtg 726
Query: 265 aagctcgcagtgagcatgaggctagtcgtcgcttgaagactgagctacttattcagatgg 324
||| |||||||| ||||| ||||| | || | || || ||||| || ||||||||||
Sbjct: 727 aaggccgcagtgaacatgaagctagcaggcgtctcaaaaccgagctgctcattcagatgg 786
Query: 325 atggtttgaca-aagacaaacgacttggtatttgtacttgcagctacaaatcttccctgg 383
|||| || ||| || || || || | |||||||| | ||||| |||||||| ||||||
Sbjct: 787 atgggtt-acagaaaacgaatgagctcgtatttgttttagcagcaacaaatctcccctgg 845
Query: 384 gaattggatgcagccatgctccgccggcttgagaagcggattcttgtacc 433
||| | |||||||| |||||||| || || ||||| || |||||||||||
Sbjct: 846 gaactagatgcagctatgctccggcgtctagagaaacgaattcttgtacc 895
Score = 46.1 bits (23), Expect = 0.014
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 540 tactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacg 598
|||||||||||||| ||||| | | || || |||||||| |||||||||||||||||
Sbjct: 1002 tactctggttcagacattcgaatactttgtaaggaagctgcgatgcaaccactgagacg 1060
>ref|NM_129009.2| Arabidopsis thaliana ATP binding / ATPase/
nucleoside-triphosphatase/ nucleotide binding AT2G34560
transcript variant AT2G34560.1 mRNA, complete cds
Length = 1408
Score = 135 bits (68), Expect = 2e-029
Identities = 327/410 (79%), Gaps = 5/410 (1%)
Strand = Plus / Plus
Query: 28 ctccatggaaaggcatcttactttttggccccccaggaacaggaaagacaatgctggcaa 87
||||||||||||| || | |||||||| || || || || |||||||| ||||| ||||
Sbjct: 504 ctccatggaaaggaattcttctttttggtcctcctggtaccggaaagactatgcttgcaa 563
Query: 88 aagcggtcgctactgagtgcaaaaccaccttcttcaacatttcagcatcatcaattgtca 147
| || || ||||| |||||||| || || ||||||||||| ||||| ||||| |||| |
Sbjct: 564 aggctgttgctacagagtgcaatacaacattcttcaacatctcagcctcatctgttgtta 623
Query: 148 gcaaatggcgtggagattcagagaagcttgtcaaagttctgtttgagcttgctaggcatc 207
|||||||| | || ||||| |||||| | | | ||||||||| || || ||||||||||
Sbjct: 624 gcaaatggagaggtgattctgagaagttgataagagttctgttcgatctagctaggcatc 683
Query: 208 atgcaccatccacaatattccttgatgaaatagatgctatcatcagccagc---gtggtg 264
||||||| || |||||||| |||||||| || || || ||||| ||||| | ||||||
Sbjct: 684 atgcaccttcgacaatatttcttgatgagatcgacgcgatcataagccaacgtggtggtg 743
Query: 265 aagctcgcagtgagcatgaggctagtcgtcgcttgaagactgagctacttattcagatgg 324
||| |||||||| ||||| ||||| | || | || || ||||| || ||||||||||
Sbjct: 744 aaggccgcagtgaacatgaagctagcaggcgtctcaaaaccgagctgctcattcagatgg 803
Query: 325 atggtttgaca-aagacaaacgacttggtatttgtacttgcagctacaaatcttccctgg 383
|||| || ||| || || || || | |||||||| | ||||| |||||||| ||||||
Sbjct: 804 atgggtt-acagaaaacgaatgagctcgtatttgttttagcagcaacaaatctcccctgg 862
Query: 384 gaattggatgcagccatgctccgccggcttgagaagcggattcttgtacc 433
||| | |||||||| |||||||| || || ||||| || |||||||||||
Sbjct: 863 gaactagatgcagctatgctccggcgtctagagaaacgaattcttgtacc 912
Score = 46.1 bits (23), Expect = 0.014
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 540 tactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacg 598
|||||||||||||| ||||| | | || || |||||||| |||||||||||||||||
Sbjct: 1019 tactctggttcagacattcgaatactttgtaaggaagctgcgatgcaaccactgagacg 1077
>ref|NM_201871.1| Arabidopsis thaliana ATP binding / ATPase/
nucleoside-triphosphatase/ nucleotide binding AT2G34560
transcript variant AT2G34560.2 mRNA, complete cds
Length = 1400
Score = 135 bits (68), Expect = 2e-029
Identities = 327/410 (79%), Gaps = 5/410 (1%)
Strand = Plus / Plus
Query: 28 ctccatggaaaggcatcttactttttggccccccaggaacaggaaagacaatgctggcaa 87
||||||||||||| || | |||||||| || || || || |||||||| ||||| ||||
Sbjct: 496 ctccatggaaaggaattcttctttttggtcctcctggtaccggaaagactatgcttgcaa 555
Query: 88 aagcggtcgctactgagtgcaaaaccaccttcttcaacatttcagcatcatcaattgtca 147
| || || ||||| |||||||| || || ||||||||||| ||||| ||||| |||| |
Sbjct: 556 aggctgttgctacagagtgcaatacaacattcttcaacatctcagcctcatctgttgtta 615
Query: 148 gcaaatggcgtggagattcagagaagcttgtcaaagttctgtttgagcttgctaggcatc 207
|||||||| | || ||||| |||||| | | | ||||||||| || || ||||||||||
Sbjct: 616 gcaaatggagaggtgattctgagaagttgataagagttctgttcgatctagctaggcatc 675
Query: 208 atgcaccatccacaatattccttgatgaaatagatgctatcatcagccagc---gtggtg 264
||||||| || |||||||| |||||||| || || || ||||| ||||| | ||||||
Sbjct: 676 atgcaccttcgacaatatttcttgatgagatcgacgcgatcataagccaacgtggtggtg 735
Query: 265 aagctcgcagtgagcatgaggctagtcgtcgcttgaagactgagctacttattcagatgg 324
||| |||||||| ||||| ||||| | || | || || ||||| || ||||||||||
Sbjct: 736 aaggccgcagtgaacatgaagctagcaggcgtctcaaaaccgagctgctcattcagatgg 795
Query: 325 atggtttgaca-aagacaaacgacttggtatttgtacttgcagctacaaatcttccctgg 383
|||| || ||| || || || || | |||||||| | ||||| |||||||| ||||||
Sbjct: 796 atgggtt-acagaaaacgaatgagctcgtatttgttttagcagcaacaaatctcccctgg 854
Query: 384 gaattggatgcagccatgctccgccggcttgagaagcggattcttgtacc 433
||| | |||||||| |||||||| || || ||||| || |||||||||||
Sbjct: 855 gaactagatgcagctatgctccggcgtctagagaaacgaattcttgtacc 904
Score = 46.1 bits (23), Expect = 0.014
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 540 tactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacg 598
|||||||||||||| ||||| | | || || |||||||| |||||||||||||||||
Sbjct: 1011 tactctggttcagacattcgaatactttgtaaggaagctgcgatgcaaccactgagacg 1069
>gb|AV557699.1|AV557699 AV557699 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ076b01F 3', mRNA sequence
Length = 493
Score = 129 bits (65), Expect = 1e-027
Identities = 194/237 (81%)
Strand = Plus / Plus
Query: 28 ctccatggaaaggcatcttactttttggccccccaggaacaggaaagacaatgctggcaa 87
||||||||||||| || | |||||||| || || || || |||||||| ||||| ||||
Sbjct: 116 ctccatggaaaggaattcttctttttggtcctcctggtaccggaaagactatgcttgcaa 175
Query: 88 aagcggtcgctactgagtgcaaaaccaccttcttcaacatttcagcatcatcaattgtca 147
| || || ||||| |||||||| || || ||||||||||| ||||| ||||| ||||| |
Sbjct: 176 aggctgttgctacagagtgcaatacaacattcttcaacatctcagcctcatctattgtta 235
Query: 148 gcaaatggcgtggagattcagagaagcttgtcaaagttctgtttgagcttgctaggcatc 207
|||||||| | || ||||| |||||| | | | ||||||||| || || ||||||||||
Sbjct: 236 gcaaatggagaggtgattctgagaagttgataagagttctgttcgatctagctaggcatc 295
Query: 208 atgcaccatccacaatattccttgatgaaatagatgctatcatcagccagcgtggtg 264
||||||| || |||||||| |||||||| || || || ||||| ||||| |||||||
Sbjct: 296 atgcaccttcgacaatatttcttgatgagatcgacgcgatcataagccaacgtggtg 352
>emb|BX821969.1|CNS0A8BH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL89ZC06 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1269
Score = 121 bits (61), Expect = 3e-025
Identities = 193/237 (81%)
Strand = Plus / Plus
Query: 28 ctccatggaaaggcatcttactttttggccccccaggaacaggaaagacaatgctggcaa 87
||||||||||||| || | |||||||| || || || || |||||||| ||||| ||||
Sbjct: 462 ctccatggaaaggaattcttctttttggtcctcctggtaccggaaagactatgcttgcaa 521
Query: 88 aagcggtcgctactgagtgcaaaaccaccttcttcaacatttcagcatcatcaattgtca 147
| || || ||||| |||||||| || || ||||||||||| ||||| ||||| |||| |
Sbjct: 522 aggctgttgctacagagtgcaatacaacattcttcaacatctcagcctcatctgttgtta 581
Query: 148 gcaaatggcgtggagattcagagaagcttgtcaaagttctgtttgagcttgctaggcatc 207
|||||||| | || ||||| |||||| | | | ||||||||| || || ||||||||||
Sbjct: 582 gcaaatggagaggtgattctgagaagttgataagagttctgttcgatctagctaggcatc 641
Query: 208 atgcaccatccacaatattccttgatgaaatagatgctatcatcagccagcgtggtg 264
||||||| || |||||||| |||||||| || || || ||||| ||||| |||||||
Sbjct: 642 atgcaccttcgacaatatttcttgatgagatcgacgcgatcataagccaacgtggtg 698
>emb|BX820132.1|CNS0A8FZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS78ZF05 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1315
Score = 119 bits (60), Expect = 1e-024
Identities = 325/410 (79%), Gaps = 5/410 (1%)
Strand = Plus / Plus
Query: 28 ctccatggaaaggcatcttactttttggccccccaggaacaggaaagacaatgctggcaa 87
||||||||||||| || | |||||||| || || || || |||||||| ||||| || |
Sbjct: 467 ctccatggaaaggaattcttctttttggtcctcctggtaccggaaagactatgcttgcga 526
Query: 88 aagcggtcgctactgagtgcaaaaccaccttcttcaacatttcagcatcatcaattgtca 147
| || || ||||| |||||||| || || ||||||||||| ||||| ||||| |||| |
Sbjct: 527 aggctgttgctacagagtgcaatacaacattcttcaacatctcagcctcatctgttgtta 586
Query: 148 gcaaatggcgtggagattcagagaagcttgtcaaagttctgtttgagcttgctaggcatc 207
|||| ||| | || ||||| |||||| | | | ||||||||| || || ||||||||||
Sbjct: 587 gcaagtggagaggtgattctgagaagttgataagagttctgttcgatctagctaggcatc 646
Query: 208 atgcaccatccacaatattccttgatgaaatagatgctatcatcagccagc---gtggtg 264
||||||| || |||||||| |||||||| || || || ||||| ||||| | ||||||
Sbjct: 647 atgcaccttcgacaatatttcttgatgagatcgacgcgatcataagccaacgtggtggtg 706
Query: 265 aagctcgcagtgagcatgaggctagtcgtcgcttgaagactgagctacttattcagatgg 324
||| |||||||| ||||| ||||| | || | || || ||||| || ||||||||||
Sbjct: 707 aaggccgcagtgaacatgaagctagcaggcgtctcaaaaccgagctgctcattcagatgg 766
Query: 325 atggtttgaca-aagacaaacgacttggtatttgtacttgcagctacaaatcttccctgg 383
|||| || ||| || || || || | |||||||| | ||||| |||||||| ||||||
Sbjct: 767 atgggtt-acagaaaacgaatgagctcgtatttgttttagcagcaacaaatctcccctgg 825
Query: 384 gaattggatgcagccatgctccgccggcttgagaagcggattcttgtacc 433
||| | |||||||| |||||||| || || ||||| || |||||||||||
Sbjct: 826 gaactagatgcagctatgctccggcgtctagagaaacgaattcttgtacc 875
Score = 46.1 bits (23), Expect = 0.014
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 540 tactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacg 598
|||||||||||||| ||||| | | || || |||||||| |||||||||||||||||
Sbjct: 982 tactctggttcagacattcgaatactttgtaaggaagctgcgatgcaaccactgagacg 1040
>emb|BX819896.1|CNS0A8GP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS44ZF08 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1405
Score = 113 bits (57), Expect = 7e-023
Identities = 192/237 (81%)
Strand = Plus / Plus
Query: 28 ctccatggaaaggcatcttactttttggccccccaggaacaggaaagacaatgctggcaa 87
||||||||||||| || | |||||||| || || || || |||||||| ||||| || |
Sbjct: 470 ctccatggaaaggaattcttctttttggtcctcctggtaccggaaagactatgcttgcga 529
Query: 88 aagcggtcgctactgagtgcaaaaccaccttcttcaacatttcagcatcatcaattgtca 147
| || || ||||| |||||||| || || ||||||||||| ||||| ||||| |||| |
Sbjct: 530 aggctgttgctacagagtgcaatacaacattcttcaacatctcagcctcatctgttgtta 589
Query: 148 gcaaatggcgtggagattcagagaagcttgtcaaagttctgtttgagcttgctaggcatc 207
|||||||| | || ||||| |||||| | | | ||||||||| || || ||||||||||
Sbjct: 590 gcaaatggagaggtgattctgagaagttgataagagttctgttcgatctagctaggcatc 649
Query: 208 atgcaccatccacaatattccttgatgaaatagatgctatcatcagccagcgtggtg 264
||||||| || |||||||| |||||||| || || || ||||| ||||| |||||||
Sbjct: 650 atgcaccttcgacaatatttcttgatgagatcgacgcgatcataagccaacgtggtg 706
Score = 46.1 bits (23), Expect = 0.014
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 540 tactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacg 598
|||||||||||||| ||||| | | || || |||||||| |||||||||||||||||
Sbjct: 1069 tactctggttcagacattcgaatactttgtaaggaagctgcgatgcaaccactgagacg 1127
>gb|BX837367.1|BX837367 BX837367 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS83ZF02 5PRIM, mRNA
sequence
Length = 709
Score = 103 bits (52), Expect = 7e-020
Identities = 169/208 (81%)
Strand = Plus / Plus
Query: 28 ctccatggaaaggcatcttactttttggccccccaggaacaggaaagacaatgctggcaa 87
||||||||||||| || | |||||||| || || || || |||||||| ||||| || |
Sbjct: 496 ctccatggaaaggaattcttctttttggtcctcctggtaccggaaagactatgcttgcga 555
Query: 88 aagcggtcgctactgagtgcaaaaccaccttcttcaacatttcagcatcatcaattgtca 147
| || || ||||| |||||||| || || ||||||||||| ||||| ||||| |||| |
Sbjct: 556 aggctgttgctacagagtgcaatacaacattcttcaacatctcagcctcatctgttgtta 615
Query: 148 gcaaatggcgtggagattcagagaagcttgtcaaagttctgtttgagcttgctaggcatc 207
|||||||| | || ||||| |||||| | | | ||||||||| || || ||||||||||
Sbjct: 616 gcaaatggagaggtgattctgagaagttgataagagttctgttcgatctagctaggcatc 675
Query: 208 atgcaccatccacaatattccttgatga 235
||||||| || |||||||| ||||||||
Sbjct: 676 atgcaccttcgacaatatttcttgatga 703
>gb|CK121475.1|CK121475 203a04.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011A04203
5-PRIME, mRNA sequence
Length = 653
Score = 101 bits (51), Expect = 3e-019
Identities = 256/321 (79%), Gaps = 5/321 (1%)
Strand = Plus / Plus
Query: 117 ttcttcaacatttcagcatcatcaattgtcagcaaatggcgtggagattcagagaagctt 176
||||||||||| ||||| ||||| |||| ||||||||| | || ||||| |||||| |
Sbjct: 12 ttcttcaacatctcagcctcatctgttgttagcaaatggagaggtgattctgagaagttg 71
Query: 177 gtcaaagttctgtttgagcttgctaggcatcatgcaccatccacaatattccttgatgaa 236
| | ||||||||| || || ||||||||||||||||| || |||||||| ||||||||
Sbjct: 72 ataagagttctgttcgatctagctaggcatcatgcaccttcgacaatatttcttgatgag 131
Query: 237 atagatgctatcatcagccagc---gtggtgaagctcgcagtgagcatgaggctagtcgt 293
|| || || ||||| ||||| | ||||||||| |||||||| ||||| ||||| |
Sbjct: 132 atcgacgcgatcataagccaacgtggtggtgaaggccgcagtgaacatgaagctagcagg 191
Query: 294 cgcttgaagactgagctacttattcagatggatggtttgaca-aagacaaacgacttggt 352
|| | || || ||||| || |||||||||||||| || ||| || || || || | ||
Sbjct: 192 cgtctcaaaaccgagctgctcattcagatggatgggtt-acagaaaacgaatgagctcgt 250
Query: 353 atttgtacttgcagctacaaatcttccctgggaattggatgcagccatgctccgccggct 412
|||||| | ||||| |||||||| ||||||||| | |||||||| |||||||| || ||
Sbjct: 251 atttgttttagcagcaacaaatctcccctgggaactagatgcagctatgctccggcgtct 310
Query: 413 tgagaagcggattcttgtacc 433
||||| || |||||||||||
Sbjct: 311 agagaaacgaattcttgtacc 331
Score = 46.1 bits (23), Expect = 0.014
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 540 tactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacg 598
|||||||||||||| ||||| | | || || |||||||| |||||||||||||||||
Sbjct: 438 tactctggttcagacattcgaatactttgtaaggaagctgcgatgcaaccactgagacg 496
>gb|AC004077.3| Arabidopsis thaliana chromosome 2 clone T31E10 map ve016, complete
sequence
Length = 93060
Score = 69.9 bits (35), Expect = 9e-010
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 182 agttctgtttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaataga 241
||||||||| || || ||||||||||||||||| || |||||||| |||||||| || ||
Sbjct: 41878 agttctgttcgatctagctaggcatcatgcaccttcgacaatatttcttgatgagatcga 41819
Query: 242 tgctatcatcagccagcgtggtg 264
|| ||||| ||||| |||||||
Sbjct: 41818 cgcgatcataagccaacgtggtg 41796
Score = 54.0 bits (27), Expect = 6e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 73 agacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaacatttcag 132
|||| ||||| ||||| || || ||||| |||||||| || || ||||||||||| ||||
Sbjct: 42079 agactatgcttgcaaaggctgttgctacagagtgcaatacaacattcttcaacatctcag 42020
Query: 133 catcatcaattgtcagcaaatgg 155
| ||||| |||| |||||||||
Sbjct: 42019 cctcatctgttgttagcaaatgg 41997
Score = 46.1 bits (23), Expect = 0.014
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 540 tactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacg 598
|||||||||||||| ||||| | | || || |||||||| |||||||||||||||||
Sbjct: 41348 tactctggttcagacattcgaatactttgtaaggaagctgcgatgcaaccactgagacg 41290
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 69.9 bits (35), Expect = 9e-010
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 182 agttctgtttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaataga 241
||||||||| || || ||||||||||||||||| || |||||||| |||||||| || ||
Sbjct: 14568916 agttctgttcgatctagctaggcatcatgcaccttcgacaatatttcttgatgagatcga 14568975
Query: 242 tgctatcatcagccagcgtggtg 264
|| ||||| ||||| |||||||
Sbjct: 14568976 cgcgatcataagccaacgtggtg 14568998
Score = 54.0 bits (27), Expect = 6e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 73 agacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaacatttcag 132
|||| ||||| ||||| || || ||||| |||||||| || || ||||||||||| ||||
Sbjct: 14568715 agactatgcttgcaaaggctgttgctacagagtgcaatacaacattcttcaacatctcag 14568774
Query: 133 catcatcaattgtcagcaaatgg 155
| ||||| |||| |||||||||
Sbjct: 14568775 cctcatctgttgttagcaaatgg 14568797
Score = 46.1 bits (23), Expect = 0.014
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 540 tactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacg 598
|||||||||||||| ||||| | | || || |||||||| |||||||||||||||||
Sbjct: 14569446 tactctggttcagacattcgaatactttgtaaggaagctgcgatgcaaccactgagacg 14569504
>gb|AV542767.1|AV542767 AV542767 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ19a04F 3', mRNA sequence
Length = 625
Score = 61.9 bits (31), Expect = 2e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 363 gcagctacaaatcttccctgggaattggatgcagccatgctccgccggcttgagaagcgg 422
||||| |||||||| ||||||||| | |||||||| |||||||| || || ||||| ||
Sbjct: 493 gcagcaacaaatctcccctgggaactagatgcagctatgctccggcgtctagagaaacga 434
Query: 423 attcttgtacc 433
|||||||||||
Sbjct: 433 attcttgtacc 423
Score = 46.1 bits (23), Expect = 0.014
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 540 tactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacg 598
|||||||||||||| ||||| | | || || |||||||| |||||||||||||||||
Sbjct: 316 tactctggttcagacattcgaatactttgtaaggaagctgcgatgcaaccactgagacg 258
>gb|BZ661252.1|BZ661252 SALK_024718.46.45.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_024718.46.45.x,
DNA sequence
Length = 305
Score = 54.0 bits (27), Expect = 6e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 73 agacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaacatttcag 132
|||| ||||| ||||| || || ||||| |||||||| || || ||||||||||| ||||
Sbjct: 106 agactatgcttgcaaaggctgttgctacagagtgcaatacaacattcttcaacatctcag 47
Query: 133 catcatcaattgtcagcaaatgg 155
| ||||| |||| |||||||||
Sbjct: 46 cctcatctgttgttagcaaatgg 24
>emb|AJ588920.1| Arabidopsis thaliana T-DNA flanking sequence, right border, clone
541B01, genomic survey sequence
Length = 591
Score = 54.0 bits (27), Expect = 6e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 73 agacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaacatttcag 132
|||| ||||| ||||| || || ||||| |||||||| || || ||||||||||| ||||
Sbjct: 175 agactatgcttgcaaaggctgttgctacagagtgcaatacaacattcttcaacatctcag 116
Query: 133 catcatcaattgtcagcaaatgg 155
| ||||| |||| |||||||||
Sbjct: 115 cctcatctgttgttagcaaatgg 93
>gb|BP565092.1|BP565092 BP565092 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-10-N21 3',
mRNA sequence
Length = 405
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 571 aagaagctgccatgcaaccactgagacg 598
|||||||||| |||||||||||||||||
Sbjct: 340 aagaagctgcgatgcaaccactgagacg 313
>gb|AI998100.1|AI998100 701672185 A. thaliana, Columbia Col-0, rosette-1 Arabidopsis
thaliana cDNA clone 701672185, mRNA sequence
Length = 488
Score = 46.1 bits (23), Expect = 0.014
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 540 tactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacg 598
|||||||||||||| ||||| | | || || |||||||| |||||||||||||||||
Sbjct: 390 tactctggttcagacattcgaatactttgtaaggaagctgcgatgcaaccactgagacg 332
>gb|AV786944.1|AV786944 AV786944 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-73-H12 3',
mRNA sequence
Length = 396
Score = 46.1 bits (23), Expect = 0.014
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 540 tactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacg 598
|||||||||||||| ||||| | | || || |||||||| |||||||||||||||||
Sbjct: 357 tactctggttcagacattcgaatactttgtaaggaagctgcgatgcaaccactgagacg 299
>gb|AV794282.1|AV794282 AV794282 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-12-D11 3',
mRNA sequence
Length = 443
Score = 46.1 bits (23), Expect = 0.014
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 540 tactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacg 598
|||||||||||||| ||||| | | || || |||||||| |||||||||||||||||
Sbjct: 384 tactctggttcagacattcgaatactttgtaaggaagctgcgatgcaaccactgagacg 326
>gb|BP567253.1|BP567253 BP567253 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-57-E23 3',
mRNA sequence
Length = 431
Score = 46.1 bits (23), Expect = 0.014
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 540 tactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacg 598
|||||||||||||| ||||| | | || || |||||||| |||||||||||||||||
Sbjct: 372 tactctggttcagacattcgaatactttgtaaggaagctgcgatgcaaccactgagacg 314
>gb|BP590335.1|BP590335 BP590335 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-10-H13 3',
mRNA sequence
Length = 430
Score = 46.1 bits (23), Expect = 0.014
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 540 tactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacg 598
|||||||||||||| ||||| | | || || |||||||| |||||||||||||||||
Sbjct: 410 tactctggttcagacattcgaatactttgtaaggaagctgcgatgcaaccactgagacg 352
>gb|BP595875.1|BP595875 BP595875 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-31-N07 3',
mRNA sequence
Length = 461
Score = 46.1 bits (23), Expect = 0.014
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 540 tactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacg 598
|||||||||||||| ||||| | | || || |||||||| |||||||||||||||||
Sbjct: 373 tactctggttcagacattcgaatactttgtaaggaagctgcgatgcaaccactgagacg 315
>gb|BP630454.1|BP630454 BP630454 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-20-D12 3',
mRNA sequence
Length = 425
Score = 46.1 bits (23), Expect = 0.014
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 540 tactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacg 598
|||||||||||||| ||||| | | || || |||||||| |||||||||||||||||
Sbjct: 357 tactctggttcagacattcgaatactttgtaaggaagctgcgatgcaaccactgagacg 299
>gb|BP666082.1|BP666082 BP666082 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-18-I17 3',
mRNA sequence
Length = 420
Score = 46.1 bits (23), Expect = 0.014
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 540 tactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacg 598
|||||||||||||| ||||| | | || || |||||||| |||||||||||||||||
Sbjct: 363 tactctggttcagacattcgaatactttgtaaggaagctgcgatgcaaccactgagacg 305
>gb|AV545465.1|AV545465 AV545465 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ84a01F 3', mRNA sequence
Length = 364
Score = 44.1 bits (22), Expect = 0.054
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 573 gaagctgccatgcaaccactgagacg 598
|||||||| |||||||||||||||||
Sbjct: 358 gaagctgcgatgcaaccactgagacg 333
>gb|BP626010.1|BP626010 BP626010 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-45-N23 3',
mRNA sequence
Length = 434
Score = 44.1 bits (22), Expect = 0.054
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 540 tactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagac 597
|||||||||||||| ||||| | | || || |||||||| ||||||||||||||||
Sbjct: 373 tactctggttcagacattcgaatactttgtaaggaagctgcgatgcaaccactgagac 316
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 565,114
Number of Sequences: 1013581
Number of extensions: 565114
Number of successful extensions: 41259
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40944
Number of HSP's gapped (non-prelim): 282
length of query: 1174
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1154
effective length of database: 888,669,252
effective search space: 1025524316808
effective search space used: 1025524316808
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)