BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419155.2.3
(1354 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|H77244.1|H77244 17675 Lambda-PRL2 Arabidopsis thaliana c... 96 2e-017
gb|M59198.1|ATHP34CDC2 A.thaliana protein kinase (cdc2) mRN... 96 2e-017
gb|AY090353.1| Arabidopsis thaliana AT3g48750/T21J18_20 mRN... 96 2e-017
emb|AX505456.1| Sequence 151 from Patent WO0216655 96 2e-017
gb|AY085153.1| Arabidopsis thaliana clone 13362 mRNA, compl... 96 2e-017
emb|BX822293.1|CNS0A4PR Arabidopsis thaliana Full-length cD... 96 2e-017
dbj|D10850.1|ATHCDC2A Arabidopsis thaliana CDC2a gene for p... 96 2e-017
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 96 2e-017
emb|AL132963.1|ATT21J18 Arabidopsis thaliana DNA chromosome... 96 2e-017
emb|X57839.1|ATCDC2AP A.thaliana CDC2a gene for p34(cdc2)-l... 96 2e-017
gb|S45387.1| cdc2/CDC28 homolog [Arabidopsis thaliana, ecot... 96 2e-017
ref|NM_114734.2| Arabidopsis thaliana CDC2A (CELL DIVISION ... 96 2e-017
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 96 2e-017
emb|BX824647.1|CNS0A5K7 Arabidopsis thaliana Full-length cD... 80 1e-012
gb|AV823361.1|AV823361 AV823361 RAFL5 Arabidopsis thaliana ... 78 4e-012
gb|AV552008.1|AV552008 AV552008 Arabidopsis thaliana roots ... 72 3e-010
gb|DQ156168.1| Arabidopsis thaliana cyclin dependent kinase... 70 1e-009
gb|AV542174.1|AV542174 AV542174 Arabidopsis thaliana roots ... 58 4e-006
gb|AV784313.1|AV784313 AV784313 RAFL5 Arabidopsis thaliana ... 52 3e-004
gb|AV563557.1|AV563557 AV563557 Arabidopsis thaliana green ... 52 3e-004
>gb|H77244.1|H77244 17675 Lambda-PRL2 Arabidopsis thaliana cDNA clone 205H2T7, mRNA
sequence
Length = 541
Score = 95.6 bits (48), Expect = 2e-017
Identities = 150/184 (81%)
Strand = Plus / Plus
Query: 549 tgatcaagtcatacctctaccagatactccgtggtgttgcgtactgccattctcatagag 608
||||||| |||| || |||||||| |||||||| ||||||| ||||| |||||||| |
Sbjct: 48 tgatcaaaacatatctttaccagattctccgtggaattgcgtattgccactctcataggg 107
Query: 609 ttcttcaccgagatttgaaacctcagaacttattgatagatcggcgcactaatgcactga 668
|||| || || ||| |||| || ||||| || ||||| ||||| ||||| || ||||||
Sbjct: 108 ttctccatcgtgatctgaagccacagaatttgttgattgatcgccgcacaaactcactga 167
Query: 669 agcttgcagactttggtttagccagggcatttggaattcctgtccgtacatttactcatg 728
||||||| || ||||| | ||||| ||||| || || |||||| | |||||||||||||
Sbjct: 168 agcttgctgattttggactggccagagcattcggtatccctgtcaggacatttactcatg 227
Query: 729 aggt 732
||||
Sbjct: 228 aggt 231
>gb|M59198.1|ATHP34CDC2 A.thaliana protein kinase (cdc2) mRNA, complete cds
Length = 1346
Score = 95.6 bits (48), Expect = 2e-017
Identities = 150/184 (81%)
Strand = Plus / Plus
Query: 549 tgatcaagtcatacctctaccagatactccgtggtgttgcgtactgccattctcatagag 608
||||||| |||| || |||||||| |||||||| ||||||| ||||| |||||||| |
Sbjct: 475 tgatcaaaacatatctttaccagattctccgtggaattgcgtattgccactctcataggg 534
Query: 609 ttcttcaccgagatttgaaacctcagaacttattgatagatcggcgcactaatgcactga 668
|||| || || ||| |||| || ||||| || ||||| ||||| ||||| || ||||||
Sbjct: 535 ttctccatcgtgatctgaagccacagaatttgttgattgatcgccgcacaaactcactga 594
Query: 669 agcttgcagactttggtttagccagggcatttggaattcctgtccgtacatttactcatg 728
||||||| || ||||| | ||||| ||||| || || |||||| | |||||||||||||
Sbjct: 595 agcttgctgattttggactggccagagcattcggtatccctgtcaggacatttactcatg 654
Query: 729 aggt 732
||||
Sbjct: 655 aggt 658
>gb|AY090353.1| Arabidopsis thaliana AT3g48750/T21J18_20 mRNA, complete cds
Length = 1288
Score = 95.6 bits (48), Expect = 2e-017
Identities = 150/184 (81%)
Strand = Plus / Plus
Query: 549 tgatcaagtcatacctctaccagatactccgtggtgttgcgtactgccattctcatagag 608
||||||| |||| || |||||||| |||||||| ||||||| ||||| |||||||| |
Sbjct: 483 tgatcaaaacatatctttaccagattctccgtggaattgcgtattgccactctcataggg 542
Query: 609 ttcttcaccgagatttgaaacctcagaacttattgatagatcggcgcactaatgcactga 668
|||| || || ||| |||| || ||||| || ||||| ||||| ||||| || ||||||
Sbjct: 543 ttctccatcgtgatctgaagccacagaatttgttgattgatcgccgcacaaactcactga 602
Query: 669 agcttgcagactttggtttagccagggcatttggaattcctgtccgtacatttactcatg 728
||||||| || ||||| | ||||| ||||| || || |||||| | |||||||||||||
Sbjct: 603 agcttgctgattttggactggccagagcattcggtatccctgtcaggacatttactcatg 662
Query: 729 aggt 732
||||
Sbjct: 663 aggt 666
>emb|AX505456.1| Sequence 151 from Patent WO0216655
Length = 885
Score = 95.6 bits (48), Expect = 2e-017
Identities = 150/184 (81%)
Strand = Plus / Plus
Query: 549 tgatcaagtcatacctctaccagatactccgtggtgttgcgtactgccattctcatagag 608
||||||| |||| || |||||||| |||||||| ||||||| ||||| |||||||| |
Sbjct: 308 tgatcaaaacatatctttaccagattctccgtggaattgcgtattgccactctcataggg 367
Query: 609 ttcttcaccgagatttgaaacctcagaacttattgatagatcggcgcactaatgcactga 668
|||| || || ||| |||| || ||||| || ||||| ||||| ||||| || ||||||
Sbjct: 368 ttctccatcgtgatctgaagccacagaatttgttgattgatcgccgcacaaactcactga 427
Query: 669 agcttgcagactttggtttagccagggcatttggaattcctgtccgtacatttactcatg 728
||||||| || ||||| | ||||| ||||| || || |||||| | |||||||||||||
Sbjct: 428 agcttgctgattttggactggccagagcattcggtatccctgtcaggacatttactcatg 487
Query: 729 aggt 732
||||
Sbjct: 488 aggt 491
>gb|AY085153.1| Arabidopsis thaliana clone 13362 mRNA, complete sequence
Length = 1310
Score = 95.6 bits (48), Expect = 2e-017
Identities = 150/184 (81%)
Strand = Plus / Plus
Query: 549 tgatcaagtcatacctctaccagatactccgtggtgttgcgtactgccattctcatagag 608
||||||| |||| || |||||||| |||||||| ||||||| ||||| |||||||| |
Sbjct: 477 tgatcaaaacatatctttaccagattctccgtggaattgcgtattgccactctcataggg 536
Query: 609 ttcttcaccgagatttgaaacctcagaacttattgatagatcggcgcactaatgcactga 668
|||| || || ||| |||| || ||||| || ||||| ||||| ||||| || ||||||
Sbjct: 537 ttctccatcgtgatctgaagccacagaatttgttgattgatcgccgcacaaactcactga 596
Query: 669 agcttgcagactttggtttagccagggcatttggaattcctgtccgtacatttactcatg 728
||||||| || ||||| | ||||| ||||| || || |||||| | |||||||||||||
Sbjct: 597 agcttgctgattttggactggccagagcattcggtatccctgtcaggacatttactcatg 656
Query: 729 aggt 732
||||
Sbjct: 657 aggt 660
>emb|BX822293.1|CNS0A4PR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB27ZA03 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1279
Score = 95.6 bits (48), Expect = 2e-017
Identities = 150/184 (81%)
Strand = Plus / Plus
Query: 549 tgatcaagtcatacctctaccagatactccgtggtgttgcgtactgccattctcatagag 608
||||||| |||| || |||||||| |||||||| ||||||| ||||| |||||||| |
Sbjct: 470 tgatcaaaacatatctttaccagattctccgtggaattgcgtattgccactctcataggg 529
Query: 609 ttcttcaccgagatttgaaacctcagaacttattgatagatcggcgcactaatgcactga 668
|||| || || ||| |||| || ||||| || ||||| ||||| ||||| || ||||||
Sbjct: 530 ttctccatcgtgatctgaagccacagaatttgttgattgatcgccgcacaaactcactga 589
Query: 669 agcttgcagactttggtttagccagggcatttggaattcctgtccgtacatttactcatg 728
||||||| || ||||| | ||||| ||||| || || |||||| | |||||||||||||
Sbjct: 590 agcttgctgattttggactggccagagcattcggtatccctgtcaggacatttactcatg 649
Query: 729 aggt 732
||||
Sbjct: 650 aggt 653
>dbj|D10850.1|ATHCDC2A Arabidopsis thaliana CDC2a gene for p34 protein serine/threonine
kinase
Length = 3479
Score = 95.6 bits (48), Expect = 2e-017
Identities = 138/168 (82%)
Strand = Plus / Plus
Query: 566 taccagatactccgtggtgttgcgtactgccattctcatagagttcttcaccgagatttg 625
|||||||| |||||||| ||||||| ||||| |||||||| ||||| || || ||| ||
Sbjct: 1410 taccagattctccgtggaattgcgtattgccactctcatagggttctccatcgtgatctg 1469
Query: 626 aaacctcagaacttattgatagatcggcgcactaatgcactgaagcttgcagactttggt 685
|| || ||||| || ||||| ||||| ||||| || ||||||||||||| || |||||
Sbjct: 1470 aagccacagaatttgttgattgatcgccgcacaaactcactgaagcttgctgattttgga 1529
Query: 686 ttagccagggcatttggaattcctgtccgtacatttactcatgaggta 733
| ||||| ||||| || || |||||| | ||||||||||||||||||
Sbjct: 1530 ctggccagagcattcggtatccctgtcaggacatttactcatgaggta 1577
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 95.6 bits (48), Expect = 2e-017
Identities = 138/168 (82%)
Strand = Plus / Plus
Query: 566 taccagatactccgtggtgttgcgtactgccattctcatagagttcttcaccgagatttg 625
|||||||| |||||||| ||||||| ||||| |||||||| ||||| || || ||| ||
Sbjct: 18036272 taccagattctccgtggaattgcgtattgccactctcatagggttctccatcgtgatctg 18036331
Query: 626 aaacctcagaacttattgatagatcggcgcactaatgcactgaagcttgcagactttggt 685
|| || ||||| || ||||| ||||| ||||| || ||||||||||||| || |||||
Sbjct: 18036332 aagccacagaatttgttgattgatcgccgcacaaactcactgaagcttgctgattttgga 18036391
Query: 686 ttagccagggcatttggaattcctgtccgtacatttactcatgaggta 733
| ||||| ||||| || || |||||| | ||||||||||||||||||
Sbjct: 18036392 ctggccagagcattcggtatccctgtcaggacatttactcatgaggta 18036439
>emb|AL132963.1|ATT21J18 Arabidopsis thaliana DNA chromosome 3, BAC clone T21J18
Length = 82912
Score = 95.6 bits (48), Expect = 2e-017
Identities = 138/168 (82%)
Strand = Plus / Plus
Query: 566 taccagatactccgtggtgttgcgtactgccattctcatagagttcttcaccgagatttg 625
|||||||| |||||||| ||||||| ||||| |||||||| ||||| || || ||| ||
Sbjct: 21253 taccagattctccgtggaattgcgtattgccactctcatagggttctccatcgtgatctg 21312
Query: 626 aaacctcagaacttattgatagatcggcgcactaatgcactgaagcttgcagactttggt 685
|| || ||||| || ||||| ||||| ||||| || ||||||||||||| || |||||
Sbjct: 21313 aagccacagaatttgttgattgatcgccgcacaaactcactgaagcttgctgattttgga 21372
Query: 686 ttagccagggcatttggaattcctgtccgtacatttactcatgaggta 733
| ||||| ||||| || || |||||| | ||||||||||||||||||
Sbjct: 21373 ctggccagagcattcggtatccctgtcaggacatttactcatgaggta 21420
>emb|X57839.1|ATCDC2AP A.thaliana CDC2a gene for p34(cdc2)-like cell cycle protein
Length = 1386
Score = 95.6 bits (48), Expect = 2e-017
Identities = 150/184 (81%)
Strand = Plus / Plus
Query: 549 tgatcaagtcatacctctaccagatactccgtggtgttgcgtactgccattctcatagag 608
||||||| |||| || |||||||| |||||||| ||||||| ||||| |||||||| |
Sbjct: 466 tgatcaaaacatatctttaccagattctccgtggaattgcgtattgccactctcataggg 525
Query: 609 ttcttcaccgagatttgaaacctcagaacttattgatagatcggcgcactaatgcactga 668
|||| || || ||| |||| || ||||| || ||||| ||||| ||||| || ||||||
Sbjct: 526 ttctccatcgtgatctgaagccacagaatttgttgattgatcgccgcacaaactcactga 585
Query: 669 agcttgcagactttggtttagccagggcatttggaattcctgtccgtacatttactcatg 728
||||||| || ||||| | ||||| ||||| || || |||||| | |||||||||||||
Sbjct: 586 agcttgctgattttggactggccagagcattcggtatccctgtcaggacatttactcatg 645
Query: 729 aggt 732
||||
Sbjct: 646 aggt 649
>gb|S45387.1| cdc2/CDC28 homolog [Arabidopsis thaliana, ecotype Columbia,
flowers, mRNA, 1364 nt]
Length = 1364
Score = 95.6 bits (48), Expect = 2e-017
Identities = 150/184 (81%)
Strand = Plus / Plus
Query: 549 tgatcaagtcatacctctaccagatactccgtggtgttgcgtactgccattctcatagag 608
||||||| |||| || |||||||| |||||||| ||||||| ||||| |||||||| |
Sbjct: 475 tgatcaaaacatatctttaccagattctccgtggaattgcgtattgccactctcataggg 534
Query: 609 ttcttcaccgagatttgaaacctcagaacttattgatagatcggcgcactaatgcactga 668
|||| || || ||| |||| || ||||| || ||||| ||||| ||||| || ||||||
Sbjct: 535 ttctccatcgtgatctgaagccacagaatttgttgattgatcgccgcacaaactcactga 594
Query: 669 agcttgcagactttggtttagccagggcatttggaattcctgtccgtacatttactcatg 728
||||||| || ||||| | ||||| ||||| || || |||||| | |||||||||||||
Sbjct: 595 agcttgctgattttggactggccagagcattcggtatccctgtcaggacatttactcatg 654
Query: 729 aggt 732
||||
Sbjct: 655 aggt 658
>ref|NM_114734.2| Arabidopsis thaliana CDC2A (CELL DIVISION CONTROL 2); kinase/
protein binding AT3G48750 (CDC2A) mRNA, complete cds
Length = 1405
Score = 95.6 bits (48), Expect = 2e-017
Identities = 150/184 (81%)
Strand = Plus / Plus
Query: 549 tgatcaagtcatacctctaccagatactccgtggtgttgcgtactgccattctcatagag 608
||||||| |||| || |||||||| |||||||| ||||||| ||||| |||||||| |
Sbjct: 483 tgatcaaaacatatctttaccagattctccgtggaattgcgtattgccactctcataggg 542
Query: 609 ttcttcaccgagatttgaaacctcagaacttattgatagatcggcgcactaatgcactga 668
|||| || || ||| |||| || ||||| || ||||| ||||| ||||| || ||||||
Sbjct: 543 ttctccatcgtgatctgaagccacagaatttgttgattgatcgccgcacaaactcactga 602
Query: 669 agcttgcagactttggtttagccagggcatttggaattcctgtccgtacatttactcatg 728
||||||| || ||||| | ||||| ||||| || || |||||| | |||||||||||||
Sbjct: 603 agcttgctgattttggactggccagagcattcggtatccctgtcaggacatttactcatg 662
Query: 729 aggt 732
||||
Sbjct: 663 aggt 666
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 95.6 bits (48), Expect = 2e-017
Identities = 138/168 (82%)
Strand = Plus / Plus
Query: 566 taccagatactccgtggtgttgcgtactgccattctcatagagttcttcaccgagatttg 625
|||||||| |||||||| ||||||| ||||| |||||||| ||||| || || ||| ||
Sbjct: 18083799 taccagattctccgtggaattgcgtattgccactctcatagggttctccatcgtgatctg 18083858
Query: 626 aaacctcagaacttattgatagatcggcgcactaatgcactgaagcttgcagactttggt 685
|| || ||||| || ||||| ||||| ||||| || ||||||||||||| || |||||
Sbjct: 18083859 aagccacagaatttgttgattgatcgccgcacaaactcactgaagcttgctgattttgga 18083918
Query: 686 ttagccagggcatttggaattcctgtccgtacatttactcatgaggta 733
| ||||| ||||| || || |||||| | ||||||||||||||||||
Sbjct: 18083919 ctggccagagcattcggtatccctgtcaggacatttactcatgaggta 18083966
>emb|BX824647.1|CNS0A5K7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH62ZB04 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1340
Score = 79.8 bits (40), Expect = 1e-012
Identities = 148/184 (80%)
Strand = Plus / Plus
Query: 549 tgatcaagtcatacctctaccagatactccgtggtgttgcgtactgccattctcatagag 608
||||||| |||| || |||||||| |||||||| ||||||| ||||| |||||||| |
Sbjct: 478 tgatcaaaacatatctttaccagattctccgtggaattgcgtattgccactctcataggg 537
Query: 609 ttcttcaccgagatttgaaacctcagaacttattgatagatcggcgcactaatgcactga 668
|||| || || ||| |||| || || || || ||||| ||||| ||||| || ||||||
Sbjct: 538 ttctccatcgtgatctgaagccacaaaatttgttgattgatcgccgcacaaactcactga 597
Query: 669 agcttgcagactttggtttagccagggcatttggaattcctgtccgtacatttactcatg 728
||||||| || ||||| | ||||| |||| || || |||||| | |||||||||||||
Sbjct: 598 agcttgctgattttggactggccagaacattcggtatccctgtcaggacatttactcatg 657
Query: 729 aggt 732
||||
Sbjct: 658 aggt 661
>gb|AV823361.1|AV823361 AV823361 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-18-G17 5',
mRNA sequence
Length = 677
Score = 77.8 bits (39), Expect = 4e-012
Identities = 145/181 (80%)
Strand = Plus / Plus
Query: 549 tgatcaagtcatacctctaccagatactccgtggtgttgcgtactgccattctcatagag 608
||||||| |||| || |||||||| |||||||| ||||||| ||||| |||||||| |
Sbjct: 473 tgatcaaaacatatctttaccagattctccgtggaattgcgtattgccactctcataggg 532
Query: 609 ttcttcaccgagatttgaaacctcagaacttattgatagatcggcgcactaatgcactga 668
|||| || || ||| |||| || ||||| || |||| ||||| ||||| || ||||||
Sbjct: 533 ttctccatcgtgatctgaagccacagaatttgntgattgatcgccgcacaaactcactga 592
Query: 669 agcttgcagactttggtttagccagggcatttggaattcctgtccgtacatttactcatg 728
||||||| || ||||| | ||||| ||||| || || |||||| |||||||||||||
Sbjct: 593 agcttgctgattttggactggccagagcattcggtatccctgtcangacatttactcatg 652
Query: 729 a 729
|
Sbjct: 653 a 653
>gb|AV552008.1|AV552008 AV552008 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ18f06R 5', mRNA sequence
Length = 494
Score = 71.9 bits (36), Expect = 3e-010
Identities = 111/136 (81%)
Strand = Plus / Plus
Query: 549 tgatcaagtcatacctctaccagatactccgtggtgttgcgtactgccattctcatagag 608
||||||| |||| || |||||||| |||||||| ||||||| ||||| |||||||| |
Sbjct: 344 tgatcaaaacatatctttaccagattctccgtggaattgcgtattgccactctcataggg 403
Query: 609 ttcttcaccgagatttgaaacctcagaacttattgatagatcggcgcactaatgcactga 668
|||| || || ||| |||| || ||||| || ||||| ||||| ||||| || ||||||
Sbjct: 404 ttctccatcgtgatctgaagccacagaatttgttgattgatcgccgcacaaactcactga 463
Query: 669 agcttgcagactttgg 684
||||||| || |||||
Sbjct: 464 agcttgctgattttgg 479
>gb|DQ156168.1| Arabidopsis thaliana cyclin dependent kinase (CDKA;1) gene,
CDKA;1-2 allele, partial sequence; and T-DNA left border
genomic sequence
Length = 620
Score = 69.9 bits (35), Expect = 1e-009
Identities = 98/119 (82%)
Strand = Plus / Plus
Query: 566 taccagatactccgtggtgttgcgtactgccattctcatagagttcttcaccgagatttg 625
|||||||| |||||||| ||||||| ||||| |||||||| ||||| || || ||| ||
Sbjct: 164 taccagattctccgtggaattgcgtattgccactctcatagggttctccatcgtgatctg 223
Query: 626 aaacctcagaacttattgatagatcggcgcactaatgcactgaagcttgcagactttgg 684
|| || ||||| || ||||| ||||| ||||| || ||||||||||||| || |||||
Sbjct: 224 aagccacagaatttgttgattgatcgccgcacaaactcactgaagcttgctgattttgg 282
>gb|AV542174.1|AV542174 AV542174 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ18f06F 3', mRNA sequence
Length = 601
Score = 58.0 bits (29), Expect = 4e-006
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 632 cagaacttattgatagatcggcgcactaatgcactgaagcttgcagactttggtttagcc 691
||||| || ||||| ||||| ||||| || ||||||||||||| || ||||| | |||
Sbjct: 573 cagaatttgttgattgatcgccgcacaaactcactgaagcttgctgattttggactggcc 514
Query: 692 agggcatttggaattcctgtccgtacatttactcatgaggt 732
|| ||||| || || |||||| | |||||||||||||||||
Sbjct: 513 agagcattcggtatccctgtcaggacatttactcatgaggt 473
>gb|AV784313.1|AV784313 AV784313 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-18-G17 3',
mRNA sequence
Length = 700
Score = 52.0 bits (26), Expect = 3e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 663 cactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtacattta 722
||||||||||||| || ||||| | ||||| ||||| || || |||||| | |||||||
Sbjct: 694 cactgaagcttgctgattttggactggccagagcattcggtatccctgtcaggacattta 635
Query: 723 ctcatgaggt 732
||||||||||
Sbjct: 634 ctcatgaggt 625
>gb|AV563557.1|AV563557 AV563557 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ189d06F 3', mRNA sequence
Length = 566
Score = 52.0 bits (26), Expect = 3e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 663 cactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtacattta 722
||||||||||||| || ||||| | ||||| ||||| || || |||||| | |||||||
Sbjct: 565 cactgaagcttgctgattttggactggccagagcattcggtatccctgtcaggacattta 506
Query: 723 ctcatgaggt 732
||||||||||
Sbjct: 505 ctcatgaggt 496
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 556,826
Number of Sequences: 1013581
Number of extensions: 556826
Number of successful extensions: 42454
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41949
Number of HSP's gapped (non-prelim): 505
length of query: 1354
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1333
effective length of database: 887,655,671
effective search space: 1183245009443
effective search space used: 1183245009443
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)