BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419137.2.1
(989 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB014459.1| Arabidopsis thaliana mRNA for obtusifoliol ... 54 5e-005
gb|U87586.1|ATU87586 Arabidopsis thaliana decoy mRNA, compl... 42 0.18
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 42 0.18
emb|AL033545.2|ATF7K2 Arabidopsis thaliana DNA chromosome 4... 42 0.18
emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosom... 42 0.18
ref|NM_118372.1| Arabidopsis thaliana lipid binding AT4G224... 42 0.18
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 42 0.18
>dbj|AB014459.1| Arabidopsis thaliana mRNA for obtusifoliol 14-demethylase,
complete cds
Length = 1899
Score = 54.0 bits (27), Expect = 5e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 3 ggatccgaattcgcggccgcgtcgacg 29
|||||||||||||||||||||||||||
Sbjct: 47 ggatccgaattcgcggccgcgtcgacg 73
>gb|U87586.1|ATU87586 Arabidopsis thaliana decoy mRNA, complete cds
Length = 974
Score = 42.1 bits (21), Expect = 0.18
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 gaattcgcggccgcgtcgacg 29
|||||||||||||||||||||
Sbjct: 16 gaattcgcggccgcgtcgacg 36
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 42.1 bits (21), Expect = 0.18
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 263 ggcatcaacctcaacctgcccatcaacctcagc 295
||||||||||| | ||| |||||||||||||||
Sbjct: 7752014 ggcatcaaccttacccttcccatcaacctcagc 7751982
>emb|AL033545.2|ATF7K2 Arabidopsis thaliana DNA chromosome 4, BAC clone F7K2 (ESSA project)
Length = 106702
Score = 42.1 bits (21), Expect = 0.18
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 263 ggcatcaacctcaacctgcccatcaacctcagc 295
||||||||||| | ||| |||||||||||||||
Sbjct: 27145 ggcatcaaccttacccttcccatcaacctcagc 27113
>emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 57
Length = 199577
Score = 42.1 bits (21), Expect = 0.18
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 263 ggcatcaacctcaacctgcccatcaacctcagc 295
||||||||||| | ||| |||||||||||||||
Sbjct: 75953 ggcatcaaccttacccttcccatcaacctcagc 75921
>ref|NM_118372.1| Arabidopsis thaliana lipid binding AT4G22460 mRNA, complete cds
Length = 402
Score = 42.1 bits (21), Expect = 0.18
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 263 ggcatcaacctcaacctgcccatcaacctcagc 295
||||||||||| | ||| |||||||||||||||
Sbjct: 316 ggcatcaaccttacccttcccatcaacctcagc 348
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 42.1 bits (21), Expect = 0.18
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 263 ggcatcaacctcaacctgcccatcaacctcagc 295
||||||||||| | ||| |||||||||||||||
Sbjct: 11839258 ggcatcaaccttacccttcccatcaacctcagc 11839226
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 343,904
Number of Sequences: 1013581
Number of extensions: 343904
Number of successful extensions: 30731
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30382
Number of HSP's gapped (non-prelim): 349
length of query: 989
length of database: 908,940,872
effective HSP length: 20
effective length of query: 969
effective length of database: 888,669,252
effective search space: 861120505188
effective search space used: 861120505188
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)