BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2418946.2.2
         (710 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CB185798.1|CB185798  EST00725 Arabidopsis avirulent Pseud...    44   0.032
gb|AQ963067.1|AQ963067  LERGJ26TR LERG Arabidopsis thaliana ...    42   0.13 
gb|CB074863.1|CB074863  EST03016 Arabidopsis Acute Ozone poo...    42   0.13 

>gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseudomonas syringae subtracted
           library Arabidopsis thaliana cDNA clone AVR2-A8 similar
           to hypothetical protein targeted to chloroplast, mRNA
           sequence
          Length = 456

 Score = 44.1 bits (22), Expect = 0.032
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 1   gcggccgcccgggcaggtacgg 22
           ||||||||||||||||||||||
Sbjct: 455 gcggccgcccgggcaggtacgg 434



>gb|AQ963067.1|AQ963067 LERGJ26TR LERG Arabidopsis thaliana genomic clone LERGJ26, DNA
           sequence
          Length = 604

 Score = 42.1 bits (21), Expect = 0.13
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 178 tgttccggttgatcaagggtctgatattt 206
           ||||||||||||| ||||| |||||||||
Sbjct: 576 tgttccggttgataaaggggctgatattt 604



>gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone pooled time-points
           Forward-Subtracted Library Arabidopsis thaliana cDNA
           clone AtAOzLH10 similar to putative protein, mRNA
           sequence
          Length = 305

 Score = 42.1 bits (21), Expect = 0.13
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   gcggccgcccgggcaggtacg 21
           |||||||||||||||||||||
Sbjct: 297 gcggccgcccgggcaggtacg 277



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 217,829
Number of Sequences: 1013581
Number of extensions: 217829
Number of successful extensions: 16870
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16867
Number of HSP's gapped (non-prelim): 3
length of query: 710
length of database: 908,940,872
effective HSP length: 20
effective length of query: 690
effective length of database: 888,669,252
effective search space: 613181783880
effective search space used: 613181783880
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)