BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418946.2.1
(690 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|BX572386.1| Arabidopsis thaliana T-DNA flanking sequenc... 50 5e-004
gb|AV535768.1|AV535768 AV535768 Arabidopsis thaliana flower... 50 5e-004
gb|AC006223.4| Arabidopsis thaliana chromosome 2 clone F22D... 50 5e-004
dbj|AK117353.1| Arabidopsis thaliana At2g31960 mRNA for put... 50 5e-004
ref|NM_179847.1| Arabidopsis thaliana ATGSL03 (GLUCAN SYNTH... 50 5e-004
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 50 5e-004
emb|AL759226.1| Arabidopsis thaliana T-DNA flanking sequenc... 46 0.008
dbj|AB025605.1| Arabidopsis thaliana genomic DNA, chromosom... 46 0.008
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 46 0.008
ref|NM_123045.2| Arabidopsis thaliana ATGSL09 (GLUCAN SYNTH... 46 0.008
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 46 0.008
gb|AU228526.1|AU228526 AU228526 RAFL16 Arabidopsis thaliana... 44 0.031
gb|AV546514.1|AV546514 AV546514 Arabidopsis thaliana roots ... 44 0.031
gb|AF237733.1|AF237733 Arabidopsis thaliana callose synthas... 44 0.031
emb|AX412747.1| Sequence 511 from Patent WO0222675 44 0.031
emb|AX508002.1| Sequence 2697 from Patent WO0216655 44 0.031
emb|BX819158.1|CNS0A8YL Arabidopsis thaliana Full-length cD... 44 0.031
ref|NM_100436.2| Arabidopsis thaliana CALS1 (CALLOSE SYNTHA... 44 0.031
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 40 0.49
emb|AX441264.1| Sequence 18 from Patent EP1209228 40 0.49
dbj|BD181338.1| A stress-responsive promoter 40 0.49
gb|AC007153.2| Arabidopsis thaliana chromosome I BAC F3F20 ... 40 0.49
gb|AC005106.2|AC005106 Genomic sequence for Arabidopsis tha... 40 0.49
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 40 0.49
>emb|BX572386.1| Arabidopsis thaliana T-DNA flanking sequence GK-549C06-020727,
genomic survey sequence
Length = 430
Score = 50.1 bits (25), Expect = 5e-004
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 229 ttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcg 288
||||| || ||||||||||||||||| || || ||||| || ||||| || ||||| ||
Sbjct: 422 ttcctggcttggttcccgttcgtgtctgagtttcagacaagaatgctctttaaccaagca 363
Query: 289 ttcagcagaggtctgcagatctcccgtat 317
|| |||||||| ||||||| || |||||
Sbjct: 362 tttagcagaggattgcagatttcacgtat 334
>gb|AV535768.1|AV535768 AV535768 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB101h07F 3', mRNA sequence
Length = 533
Score = 50.1 bits (25), Expect = 5e-004
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 229 ttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcg 288
||||| || ||||||||||||||||| || || ||||| || ||||| || ||||| ||
Sbjct: 255 ttcctggcttggttcccgttcgtgtctgagtttcagacaagaatgctctttaaccaagca 196
Query: 289 ttcagcagaggtctgcagatctcccgtat 317
|| |||||||| ||||||| || |||||
Sbjct: 195 tttagcagaggattgcagatttcacgtat 167
>gb|AC006223.4| Arabidopsis thaliana chromosome 2 clone F22D22 map TEn5, complete
sequence
Length = 103194
Score = 50.1 bits (25), Expect = 5e-004
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 229 ttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcg 288
||||| || ||||||||||||||||| || || ||||| || ||||| || ||||| ||
Sbjct: 89478 ttcctggcttggttcccgttcgtgtctgagtttcagacaagaatgctctttaaccaagca 89419
Query: 289 ttcagcagaggtctgcagatctcccgtat 317
|| |||||||| ||||||| || |||||
Sbjct: 89418 tttagcagaggattgcagatttcacgtat 89390
>dbj|AK117353.1| Arabidopsis thaliana At2g31960 mRNA for putative glucan synthase,
complete cds, clone: RAFL16-92-B13
Length = 2390
Score = 50.1 bits (25), Expect = 5e-004
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 229 ttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcg 288
||||| || ||||||||||||||||| || || ||||| || ||||| || ||||| ||
Sbjct: 2136 ttcctggcttggttcccgttcgtgtctgagtttcagacaagaatgctctttaaccaagca 2195
Query: 289 ttcagcagaggtctgcagatctcccgtat 317
|| |||||||| ||||||| || |||||
Sbjct: 2196 tttagcagaggattgcagatttcacgtat 2224
>ref|NM_179847.1| Arabidopsis thaliana ATGSL03 (GLUCAN SYNTHASE-LIKE 3);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT2G31960 (ATGSL03) mRNA, complete cds
Length = 5880
Score = 50.1 bits (25), Expect = 5e-004
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 229 ttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcg 288
||||| || ||||||||||||||||| || || ||||| || ||||| || ||||| ||
Sbjct: 5746 ttcctggcttggttcccgttcgtgtctgagtttcagacaagaatgctctttaaccaagca 5805
Query: 289 ttcagcagaggtctgcagatctcccgtat 317
|| |||||||| ||||||| || |||||
Sbjct: 5806 tttagcagaggattgcagatttcacgtat 5834
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 50.1 bits (25), Expect = 5e-004
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 229 ttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcg 288
||||| || ||||||||||||||||| || || ||||| || ||||| || ||||| ||
Sbjct: 13607009 ttcctggcttggttcccgttcgtgtctgagtttcagacaagaatgctctttaaccaagca 13607068
Query: 289 ttcagcagaggtctgcagatctcccgtat 317
|| |||||||| ||||||| || |||||
Sbjct: 13607069 tttagcagaggattgcagatttcacgtat 13607097
>emb|AL759226.1| Arabidopsis thaliana T-DNA flanking sequence GK-166G08-013366,
genomic survey sequence
Length = 546
Score = 46.1 bits (23), Expect = 0.008
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 235 gcctggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagc 294
||||||||||| ||| | ||||| ||||| || || ||||| || ||||| || || |||
Sbjct: 426 gcctggttcccattcatatcggagttccaaacgagaatgctctttaaccaagcctttagc 367
Query: 295 agaggtctgcagatctcccgtat 317
|||||||| || ||||| |||||
Sbjct: 366 agaggtctacatatctcacgtat 344
>dbj|AB025605.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F5H8
Length = 70098
Score = 46.1 bits (23), Expect = 0.008
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 235 gcctggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagc 294
||||||||||| ||| | ||||| ||||| || || ||||| || ||||| || || |||
Sbjct: 63618 gcctggttcccattcatatcggagttccaaacgagaatgctctttaaccaagcctttagc 63677
Query: 295 agaggtctgcagatctcccgtat 317
|||||||| || ||||| |||||
Sbjct: 63678 agaggtctacatatctcacgtat 63700
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 46.1 bits (23), Expect = 0.008
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 235 gcctggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagc 294
||||||||||| ||| | ||||| ||||| || || ||||| || ||||| || || |||
Sbjct: 13467177 gcctggttcccattcatatcggagttccaaacgagaatgctctttaaccaagcctttagc 13467236
Query: 295 agaggtctgcagatctcccgtat 317
|||||||| || ||||| |||||
Sbjct: 13467237 agaggtctacatatctcacgtat 13467259
>ref|NM_123045.2| Arabidopsis thaliana ATGSL09 (GLUCAN SYNTHASE-LIKE 9);
1,3-beta-glucan synthase AT5G36870 (ATGSL09) mRNA,
complete cds
Length = 5589
Score = 46.1 bits (23), Expect = 0.008
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 235 gcctggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagc 294
||||||||||| ||| | ||||| ||||| || || ||||| || ||||| || || |||
Sbjct: 5461 gcctggttcccattcatatcggagttccaaacgagaatgctctttaaccaagcctttagc 5520
Query: 295 agaggtctgcagatctcccgtat 317
|||||||| || ||||| |||||
Sbjct: 5521 agaggtctacatatctcacgtat 5543
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 46.1 bits (23), Expect = 0.008
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 235 gcctggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagc 294
||||||||||| ||| | ||||| ||||| || || ||||| || ||||| || || |||
Sbjct: 14551032 gcctggttcccattcatatcggagttccaaacgagaatgctctttaaccaagcctttagc 14551091
Query: 295 agaggtctgcagatctcccgtat 317
|||||||| || ||||| |||||
Sbjct: 14551092 agaggtctacatatctcacgtat 14551114
>gb|AU228526.1|AU228526 AU228526 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-26-N18 3',
mRNA sequence
Length = 423
Score = 44.1 bits (22), Expect = 0.031
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 73 tgcatccttgctttcatgcccactggatggggtttgctgctgattgcccaagcg 126
||||| ||||| |||||||| ||||||||||| |||| || ||||| ||||||
Sbjct: 416 tgcatgcttgccttcatgccaactggatggggaatgcttctcattgcacaagcg 363
>gb|AV546514.1|AV546514 AV546514 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL15c03F 3', mRNA sequence
Length = 544
Score = 44.1 bits (22), Expect = 0.031
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 73 tgcatccttgctttcatgcccactggatggggtttgctgctgattgcccaagcg 126
||||| ||||| |||||||| ||||||||||| |||| || ||||| ||||||
Sbjct: 418 tgcatgcttgccttcatgccaactggatggggaatgcttctcattgcacaagcg 365
>gb|AF237733.1|AF237733 Arabidopsis thaliana callose synthase 1 catalytic subunit (CalS1)
mRNA, complete cds
Length = 6007
Score = 44.1 bits (22), Expect = 0.031
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 73 tgcatccttgctttcatgcccactggatggggtttgctgctgattgcccaagcg 126
||||| ||||| |||||||| ||||||||||| |||| || ||||| ||||||
Sbjct: 5572 tgcatgcttgccttcatgccaactggatggggaatgcttctcattgcacaagcg 5625
>emb|AX412747.1| Sequence 511 from Patent WO0222675
Length = 5577
Score = 44.1 bits (22), Expect = 0.031
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 73 tgcatccttgctttcatgcccactggatggggtttgctgctgattgcccaagcg 126
||||| ||||| |||||||| ||||||||||| |||| || ||||| ||||||
Sbjct: 5287 tgcatgcttgccttcatgccaactggatggggaatgcttctcattgcacaagcg 5340
>emb|AX508002.1| Sequence 2697 from Patent WO0216655
Length = 5577
Score = 44.1 bits (22), Expect = 0.031
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 73 tgcatccttgctttcatgcccactggatggggtttgctgctgattgcccaagcg 126
||||| ||||| |||||||| ||||||||||| |||| || ||||| ||||||
Sbjct: 5287 tgcatgcttgccttcatgccaactggatggggaatgcttctcattgcacaagcg 5340
>emb|BX819158.1|CNS0A8YL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB52ZD04 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1385
Score = 44.1 bits (22), Expect = 0.031
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 238 tggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagcaga 297
||||||||||||||||| || || ||||| || ||||| || ||||| || || ||||||
Sbjct: 1191 tggttcccgttcgtgtctgagtttcagacaagaatgctctttaaccaagcatttagcaga 1250
Query: 298 gg 299
||
Sbjct: 1251 gg 1252
>ref|NM_100436.2| Arabidopsis thaliana CALS1 (CALLOSE SYNTHASE 1); transferase,
transferring glycosyl groups AT1G05570 (CALS1) mRNA,
complete cds
Length = 6022
Score = 44.1 bits (22), Expect = 0.031
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 73 tgcatccttgctttcatgcccactggatggggtttgctgctgattgcccaagcg 126
||||| ||||| |||||||| ||||||||||| |||| || ||||| ||||||
Sbjct: 5572 tgcatgcttgccttcatgccaactggatggggaatgcttctcattgcacaagcg 5625
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 40.1 bits (20), Expect = 0.49
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 73 tgcatccttgctttcatgcccactggatgggg 104
||||| ||||| |||||||| |||||||||||
Sbjct: 1648144 tgcatgcttgccttcatgccaactggatgggg 1648113
>emb|AX441264.1| Sequence 18 from Patent EP1209228
Length = 2000
Score = 40.1 bits (20), Expect = 0.49
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 73 tgcatccttgctttcatgcccactggatgggg 104
||||| ||||| |||||||| |||||||||||
Sbjct: 966 tgcatgcttgccttcatgccaactggatgggg 997
>dbj|BD181338.1| A stress-responsive promoter
Length = 2000
Score = 40.1 bits (20), Expect = 0.49
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 73 tgcatccttgctttcatgcccactggatgggg 104
||||| ||||| |||||||| |||||||||||
Sbjct: 966 tgcatgcttgccttcatgccaactggatgggg 997
>gb|AC007153.2| Arabidopsis thaliana chromosome I BAC F3F20 genomic sequence, complete
sequence
Length = 103223
Score = 40.1 bits (20), Expect = 0.49
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 73 tgcatccttgctttcatgcccactggatgggg 104
||||| ||||| |||||||| |||||||||||
Sbjct: 29792 tgcatgcttgccttcatgccaactggatgggg 29761
>gb|AC005106.2|AC005106 Genomic sequence for Arabidopsis thaliana BAC T25N20 from chromosome I,
complete sequence
Length = 84203
Score = 40.1 bits (20), Expect = 0.49
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 73 tgcatccttgctttcatgcccactggatgggg 104
||||| ||||| |||||||| |||||||||||
Sbjct: 80341 tgcatgcttgccttcatgccaactggatgggg 80310
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 40.1 bits (20), Expect = 0.49
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 73 tgcatccttgctttcatgcccactggatgggg 104
||||| ||||| |||||||| |||||||||||
Sbjct: 1648267 tgcatgcttgccttcatgccaactggatgggg 1648236
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 252,365
Number of Sequences: 1013581
Number of extensions: 252365
Number of successful extensions: 17694
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17200
Number of HSP's gapped (non-prelim): 494
length of query: 690
length of database: 908,940,872
effective HSP length: 20
effective length of query: 670
effective length of database: 888,669,252
effective search space: 595408398840
effective search space used: 595408398840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)