BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418861.2.2
(1617 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV823019.1|AV823019 AV823019 RAFL5 Arabidopsis thaliana ... 139 2e-030
gb|CB261810.1|CB261810 86-E8974-008-017-K21-pBl2 MPIZ-ADIS-... 139 2e-030
gb|AV526322.1|AV526322 AV526322 Arabidopsis thaliana aboveg... 139 2e-030
gb|AV526630.1|AV526630 AV526630 Arabidopsis thaliana aboveg... 139 2e-030
gb|AV540625.1|AV540625 AV540625 Arabidopsis thaliana roots ... 139 2e-030
gb|CK119751.1|CK119751 201f11.p1 AtM1 Arabidopsis thaliana ... 139 2e-030
gb|AF090372.1|AF090372 Arabidopsis thaliana SAM:cycloarteno... 139 2e-030
gb|AY120716.1| Arabidopsis thaliana 24-sterol C-methyltrans... 139 2e-030
gb|AF494289.1| Arabidopsis thaliana cephalopod (CPH) mRNA, ... 139 2e-030
gb|BT000058.1| Arabidopsis thaliana 24-sterol C-methyltrans... 139 2e-030
emb|BX830674.1|CNS0A0QH Arabidopsis thaliana Full-length cD... 139 2e-030
emb|BX831439.1|CNS0A23U Arabidopsis thaliana Full-length cD... 139 2e-030
emb|CQ804624.1| Sequence 1035 from Patent WO2004035798 139 2e-030
gb|AF195648.1| Arabidopsis thaliana sterol methyltransferas... 139 2e-030
ref|NM_121374.2| Arabidopsis thaliana SMT1 (STEROL METHYLTR... 139 2e-030
gb|BT015538.1| Arabidopsis thaliana At5g13710 mRNA sequence 131 4e-028
gb|BP868811.1|BP868811 BP868811 RAFL21 Arabidopsis thaliana... 123 1e-025
gb|AV527723.1|AV527723 AV527723 Arabidopsis thaliana aboveg... 117 6e-024
gb|BP866348.1|BP866348 BP866348 RAFL21 Arabidopsis thaliana... 115 2e-023
dbj|AB006704.1| Arabidopsis thaliana genomic DNA, chromosom... 74 8e-011
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 74 8e-011
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 74 8e-011
gb|AV557319.1|AV557319 AV557319 Arabidopsis thaliana green ... 62 3e-007
gb|BE527299.1|BE527299 M68G13STM Arabidopsis developing see... 54 8e-005
gb|AV783910.1|AV783910 AV783910 RAFL5 Arabidopsis thaliana ... 54 8e-005
gb|AV792929.1|AV792929 AV792929 RAFL7 Arabidopsis thaliana ... 54 8e-005
gb|AV793116.1|AV793116 AV793116 RAFL7 Arabidopsis thaliana ... 54 8e-005
gb|AV534102.1|AV534102 AV534102 Arabidopsis thaliana flower... 54 8e-005
gb|AV542004.1|AV542004 AV542004 Arabidopsis thaliana roots ... 54 8e-005
gb|AV566923.1|AV566923 AV566923 Arabidopsis thaliana green ... 54 8e-005
gb|BP597580.1|BP597580 BP597580 RAFL15 Arabidopsis thaliana... 54 8e-005
gb|BP598785.1|BP598785 BP598785 RAFL16 Arabidopsis thaliana... 54 8e-005
gb|BP615618.1|BP615618 BP615618 RAFL16 Arabidopsis thaliana... 54 8e-005
gb|BP620510.1|BP620510 BP620510 RAFL16 Arabidopsis thaliana... 54 8e-005
gb|BP783988.1|BP783988 BP783988 RAFL7 Arabidopsis thaliana ... 54 8e-005
gb|BP789685.1|BP789685 BP789685 RAFL7 Arabidopsis thaliana ... 54 8e-005
gb|BP792711.1|BP792711 BP792711 RAFL7 Arabidopsis thaliana ... 54 8e-005
gb|BP794424.1|BP794424 BP794424 RAFL7 Arabidopsis thaliana ... 54 8e-005
gb|BP581371.1|BP581371 BP581371 RAFL14 Arabidopsis thaliana... 48 0.005
gb|AV440506.1|AV440506 AV440506 Arabidopsis thaliana above-... 46 0.019
gb|BP597969.1|BP597969 BP597969 RAFL16 Arabidopsis thaliana... 46 0.019
gb|BP623972.1|BP623972 BP623972 RAFL17 Arabidopsis thaliana... 46 0.019
gb|BP631830.1|BP631830 BP631830 RAFL17 Arabidopsis thaliana... 46 0.019
gb|BP644461.1|BP644461 BP644461 RAFL19 Arabidopsis thaliana... 46 0.019
gb|BP788087.1|BP788087 BP788087 RAFL7 Arabidopsis thaliana ... 46 0.019
emb|BX833706.1|CNS0A26T Arabidopsis thaliana Full-length cD... 46 0.019
gb|AV821091.1|AV821091 AV821091 RAFL2 Arabidopsis thaliana ... 42 0.30
gb|CB262826.1|CB262826 46-E8862-008-010-E14-pBl2 MPIZ-ADIS-... 42 0.30
gb|CB264457.1|CB264457 61-E014996-035-003-J16-T7R MPIZ-ADIS... 42 0.30
gb|CF652694.1|CF652694 71-L020166-066-001-N17-SP6P MPIZ-ADI... 42 0.30
gb|BX838992.1|BX838992 BX838992 Arabidopsis thaliana Adult ... 42 0.30
gb|BX841210.1|BX841210 BX841210 Arabidopsis thaliana Flower... 42 0.30
gb|AV551735.1|AV551735 AV551735 Arabidopsis thaliana roots ... 42 0.30
gb|CF774308.1|CF774308 AG_FSL_30G11 Arabidopsis ag-1 35S:AG... 42 0.30
gb|CK118763.1|CK118763 216b06.p1 AtM1 Arabidopsis thaliana ... 42 0.30
gb|CK120373.1|CK120373 218n19.p1 AtM1 Arabidopsis thaliana ... 42 0.30
gb|CB254984.1|CB254984 53-E012998-019-004-I14-T7R MPIZ-ADIS... 42 0.30
gb|BP836692.1|BP836692 BP836692 RAFL19 Arabidopsis thaliana... 42 0.30
gb|BP839964.1|BP839964 BP839964 RAFL19 Arabidopsis thaliana... 42 0.30
gb|BP850688.1|BP850688 BP850688 RAFL21 Arabidopsis thaliana... 42 0.30
emb|X89867.1|ATSTERMET A.thaliana mRNA for sterol-C-methylt... 42 0.30
gb|U71400.1|ATU71400 Arabidopsis thaliana S-adenosyl-methio... 42 0.30
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 42 0.30
gb|AF375397.1| Arabidopsis thaliana At1g76090/T23E18_40 mRN... 42 0.30
gb|AY113031.1| Arabidopsis thaliana At1g76090/T23E18_40 mRN... 42 0.30
gb|AY128389.1| Arabidopsis thaliana 24-sterol C-methyltrans... 42 0.30
gb|AF332417.1| Arabidopsis thaliana putative sterol-C-methy... 42 0.30
gb|AY046042.1| Arabidopsis thaliana putative sterol-C-methy... 42 0.30
gb|AY113961.1| Arabidopsis thaliana putative sterol-C-methy... 42 0.30
emb|AX507120.1| Sequence 1815 from Patent WO0216655 42 0.30
emb|AX507161.1| Sequence 1856 from Patent WO0216655 42 0.30
gb|BT000750.1| Arabidopsis thaliana clone RAFL09-74-F07 (R1... 42 0.30
gb|BT002093.1| Arabidopsis thaliana 24-sterol C-methyltrans... 42 0.30
emb|AX573143.1| Sequence 20 from Patent WO02061072 42 0.30
emb|AX573145.1| Sequence 22 from Patent WO02061072 42 0.30
gb|AY086699.1| Arabidopsis thaliana clone 2688 mRNA, comple... 42 0.30
gb|AC009978.3|AC009978 Genomic sequence for Arabidopsis tha... 42 0.30
gb|AC026234.4|F14O10 Sequence of BAC F14O10 from Arabidopsi... 42 0.30
emb|BX820027.1|CNS0A8GR Arabidopsis thaliana Full-length cD... 42 0.30
emb|BX814372.1|CNS0AARG Arabidopsis thaliana Full-length cD... 42 0.30
emb|BX815399.1|CNS0ACS8 Arabidopsis thaliana Full-length cD... 42 0.30
emb|BX815418.1|CNS0ACX8 Arabidopsis thaliana Full-length cD... 42 0.30
emb|BX815494.1|CNS0ACVZ Arabidopsis thaliana Full-length cD... 42 0.30
emb|BX816701.1|CNS0AD1H Arabidopsis thaliana Full-length cD... 42 0.30
emb|BX817173.1|CNS0AD6W Arabidopsis thaliana Full-length cD... 42 0.30
emb|BX814807.1|CNS0ADN4 Arabidopsis thaliana Full-length cD... 42 0.30
emb|BX815314.1|CNS0AEG7 Arabidopsis thaliana Full-length cD... 42 0.30
emb|BX816099.1|CNS0AEHI Arabidopsis thaliana Full-length cD... 42 0.30
emb|CQ804064.1| Sequence 475 from Patent WO2004035798 42 0.30
emb|Z83321.1|ATZ83321 A.thaliana 16 kb chromosome 1 DNA fra... 42 0.30
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 42 0.30
ref|NM_101884.2| Arabidopsis thaliana SMT2 (STEROL METHYLTR... 42 0.30
ref|NM_106258.3| Arabidopsis thaliana SMT3; S-adenosylmethi... 42 0.30
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.30
>gb|AV823019.1|AV823019 AV823019 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-14-G19 5', mRNA
sequence
Length = 660
Score = 139 bits (70), Expect = 2e-030
Identities = 235/290 (81%)
Strand = Plus / Minus
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||||||||||||| |||| |||||||| |||||||| || ||||| | ||||| |
Sbjct: 410 aatcttgcaatttccctcaacggtccaccaattccacatcctacatccagtaccttttgt 351
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgt 1169
||||||| | ||||| || || |||||||| ||||| |||||||| || || || ||
Sbjct: 350 cctggttggatgccaagctgaagagcaagaaagtgctcgtgtcgcttaatactctctcga 291
Query: 1170 aaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatag 1229
| |||||||| |||||||| || ||||| ||||||||||| ||||| || ||||||||
Sbjct: 290 agcgattctcctttccatctttgtgcaaaatggaaggattctccccatccgtactcataa 231
Query: 1230 aagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgct 1289
|||||||| ||||| |||||||| ||||||||||| |||||||| |||| || || ||
Sbjct: 230 aagctagtagcaaggtcatagtacttattaaccatgtcagtataattggcttttctctct 171
Query: 1290 tcctccttccctccatagtatccatgatatttctcatactcatcgacggc 1339
||||| || ||||||| | | ||||||||| |||||||| ||||||||
Sbjct: 170 tcctcgtttcctccatggaagacatgatattgctcatacttttcgacggc 121
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 863 atcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaa 922
|||||||||||| || ||||| || || || ||||| ||||| ||| |||| || |||
Sbjct: 597 atcaggtgcatggcaagttgcttctattgcataaactgcatcgaaactgttttccgggaa 538
Query: 923 cggcatcttcatgaagtccgccttgacaaaatcacatgt 961
||||||||||||||||| ||||||||||| | ||||||
Sbjct: 537 tggcatcttcatgaagtcagccttgacaaagttacatgt 499
>gb|CB261810.1|CB261810 86-E8974-008-017-K21-pBl2 MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767K2117Q 5-PRIME, mRNA sequence
Length = 547
Score = 139 bits (70), Expect = 2e-030
Identities = 235/290 (81%)
Strand = Plus / Minus
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||||||||||||| |||| |||||||| |||||||| || ||||| | ||||| |
Sbjct: 330 aatcttgcaatttccctcaacggtccaccaattccacatcctacatccagtaccttttgt 271
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgt 1169
||||||| | ||||| || || |||||||| ||||| |||||||| || || || ||
Sbjct: 270 cctggttggatgccaagctgaagagcaagaaagtgctcgtgtcgcttaatactctctcga 211
Query: 1170 aaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatag 1229
| |||||||| |||||||| || ||||| ||||||||||| ||||| || ||||||||
Sbjct: 210 agcgattctcctttccatctttgtgcaaaatggaaggattctccccatccgtactcataa 151
Query: 1230 aagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgct 1289
|||||||| ||||| |||||||| ||||||||||| |||||||| |||| || || ||
Sbjct: 150 aagctagtagcaaggtcatagtacttattaaccatgtcagtataattggcttttctctct 91
Query: 1290 tcctccttccctccatagtatccatgatatttctcatactcatcgacggc 1339
||||| || ||||||| | | ||||||||| |||||||| ||||||||
Sbjct: 90 tcctcgtttcctccatggaagacatgatattgctcatacttttcgacggc 41
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 863 atcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaa 922
|||||||||||| || ||||| || || || ||||| ||||| ||| |||| || |||
Sbjct: 517 atcaggtgcatggcaagttgcttctattgcataaactgcatcgaaactgttttccgggaa 458
Query: 923 cggcatcttcatgaagtccgccttgacaaaatcacatgt 961
||||||||||||||||| ||||||||||| | ||||||
Sbjct: 457 tggcatcttcatgaagtcagccttgacaaagttacatgt 419
>gb|AV526322.1|AV526322 AV526322 Arabidopsis thaliana aboveground organs two to six-week old
Arabidopsis thaliana cDNA clone APZ10c01R 5', mRNA
sequence
Length = 553
Score = 139 bits (70), Expect = 2e-030
Identities = 235/290 (81%)
Strand = Plus / Minus
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||||||||||||| |||| |||||||| |||||||| || ||||| | ||||| |
Sbjct: 410 aatcttgcaatttccctcaacggtccaccaattccacatcctacatccagtaccttttgt 351
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgt 1169
||||||| | ||||| || || |||||||| ||||| |||||||| || || || ||
Sbjct: 350 cctggttggatgccaagctgaagagcaagaaagtgctcgtgtcgcttaatactctctcga 291
Query: 1170 aaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatag 1229
| |||||||| |||||||| || ||||| ||||||||||| ||||| || ||||||||
Sbjct: 290 agcgattctcctttccatctttgtgcaaaatggaaggattctccccatccgtactcataa 231
Query: 1230 aagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgct 1289
|||||||| ||||| |||||||| ||||||||||| |||||||| |||| || || ||
Sbjct: 230 aagctagtagcaaggtcatagtacttattaaccatgtcagtataattggcttttctctct 171
Query: 1290 tcctccttccctccatagtatccatgatatttctcatactcatcgacggc 1339
||||| || ||||||| | | ||||||||| |||||||| ||||||||
Sbjct: 170 tcctcgtttcctccatggaagacatgatattgctcatacttttcgacggc 121
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 924 ggcatcttcatgaagtccgccttgacaaaatcacatgt 961
||||||||||||||||| ||||||||||| | ||||||
Sbjct: 536 ggcatcttcatgaagtcagccttgacaaagttacatgt 499
>gb|AV526630.1|AV526630 AV526630 Arabidopsis thaliana aboveground organs two to six-week old
Arabidopsis thaliana cDNA clone APZ17h10R 5', mRNA
sequence
Length = 491
Score = 139 bits (70), Expect = 2e-030
Identities = 235/290 (81%)
Strand = Plus / Minus
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||||||||||||| |||| |||||||| |||||||| || ||||| | ||||| |
Sbjct: 410 aatcttgcaatttccctcaacggtccaccaattccacatcctacatccagtaccttttgt 351
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgt 1169
||||||| | ||||| || || |||||||| ||||| |||||||| || || || ||
Sbjct: 350 cctggttggatgccaagctgaagagcaagaaagtgctcgtgtcgcttaatactctctcga 291
Query: 1170 aaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatag 1229
| |||||||| |||||||| || ||||| ||||||||||| ||||| || ||||||||
Sbjct: 290 agcgattctcctttccatctttgtgcaaaatggaaggattctccccatccgtactcataa 231
Query: 1230 aagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgct 1289
|||||||| ||||| |||||||| ||||||||||| |||||||| |||| || || ||
Sbjct: 230 aagctagtagcaaggtcatagtacttattaaccatgtcagtataattggcttttctctct 171
Query: 1290 tcctccttccctccatagtatccatgatatttctcatactcatcgacggc 1339
||||| || ||||||| | | ||||||||| |||||||| ||||||||
Sbjct: 170 tcctcgtttcctccatggaagacatgatattgctcatacttttcgacggc 121
>gb|AV540625.1|AV540625 AV540625 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ152g09F 3', mRNA sequence
Length = 603
Score = 139 bits (70), Expect = 2e-030
Identities = 235/290 (81%)
Strand = Plus / Minus
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||||||||||||| |||| |||||||| |||||||| || ||||| | ||||| |
Sbjct: 382 aatcttgcaatttccctcaacggtccaccaattccacatcctacatccagtaccttttgt 323
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgt 1169
||||||| | ||||| || || |||||||| ||||| |||||||| || || || ||
Sbjct: 322 cctggttggatgccaagctgaagagcaagaaagtgctcgtgtcgcttaatactctctcga 263
Query: 1170 aaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatag 1229
| |||||||| |||||||| || ||||| ||||||||||| ||||| || ||||||||
Sbjct: 262 agcgattctcctttccatctttgtgcaaaatggaaggattctccccatccgtactcataa 203
Query: 1230 aagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgct 1289
|||||||| ||||| |||||||| ||||||||||| |||||||| |||| || || ||
Sbjct: 202 aagctagtagcaaggtcatagtacttattaaccatgtcagtataattggcttttctctct 143
Query: 1290 tcctccttccctccatagtatccatgatatttctcatactcatcgacggc 1339
||||| || ||||||| | | ||||||||| |||||||| ||||||||
Sbjct: 142 tcctcgtttcctccatggaagacatgatattgctcatacttttcgacggc 93
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 863 atcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaa 922
|||||||||||| || ||||| || || || ||||| ||||| ||| |||| || |||
Sbjct: 569 atcaggtgcatggcaagttgcttctattgcataaactgcatcgaaactgttttccgggaa 510
Query: 923 cggcatcttcatgaagtccgccttgacaaaatcacatgt 961
||||||||||||||||| ||||||||||| | ||||||
Sbjct: 509 tggcatcttcatgaagtcagccttgacaaagttacatgt 471
>gb|CK119751.1|CK119751 201f11.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011F11201
5-PRIME, mRNA sequence
Length = 831
Score = 139 bits (70), Expect = 2e-030
Identities = 235/290 (81%)
Strand = Plus / Minus
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||||||||||||| |||| |||||||| |||||||| || ||||| | ||||| |
Sbjct: 397 aatcttgcaatttccctcaacggtccaccaattccacatcctacatccagtaccttttgt 338
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgt 1169
||||||| | ||||| || || |||||||| ||||| |||||||| || || || ||
Sbjct: 337 cctggttggatgccaagctgaagagcaagaaagtgctcgtgtcgcttaatactctctcga 278
Query: 1170 aaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatag 1229
| |||||||| |||||||| || ||||| ||||||||||| ||||| || ||||||||
Sbjct: 277 agcgattctcctttccatctttgtgcaaaatggaaggattctccccatccgtactcataa 218
Query: 1230 aagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgct 1289
|||||||| ||||| |||||||| ||||||||||| |||||||| |||| || || ||
Sbjct: 217 aagctagtagcaaggtcatagtacttattaaccatgtcagtataattggcttttctctct 158
Query: 1290 tcctccttccctccatagtatccatgatatttctcatactcatcgacggc 1339
||||| || ||||||| | | ||||||||| |||||||| ||||||||
Sbjct: 157 tcctcgtttcctccatggaagacatgatattgctcatacttttcgacggc 108
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 863 atcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaa 922
|||||||||||| || ||||| || || || ||||| ||||| ||| |||| || |||
Sbjct: 584 atcaggtgcatggcaagttgcttctattgcataaactgcatcgaaactgttttccgggaa 525
Query: 923 cggcatcttcatgaagtccgccttgacaaaatcacatgt 961
||||||||||||||||| ||||||||||| | ||||||
Sbjct: 524 tggcatcttcatgaagtcagccttgacaaagttacatgt 486
>gb|AF090372.1|AF090372 Arabidopsis thaliana SAM:cycloartenol-C24-methyltransferase (SMT1)
mRNA, complete cds
Length = 1269
Score = 139 bits (70), Expect = 2e-030
Identities = 235/290 (81%)
Strand = Plus / Minus
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||||||||||||| |||| |||||||| |||||||| || ||||| | ||||| |
Sbjct: 386 aatcttgcaatttccctcaacggtccaccaattccacatcctacatccagtaccttttgt 327
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgt 1169
||||||| | ||||| || || |||||||| ||||| |||||||| || || || ||
Sbjct: 326 cctggttggatgccaagctgaagagcaagaaagtgctcgtgtcgcttaatactctctcga 267
Query: 1170 aaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatag 1229
| |||||||| |||||||| || ||||| ||||||||||| ||||| || ||||||||
Sbjct: 266 agcgattctcctttccatctttgtgcaaaatggaaggattctccccatccgtactcataa 207
Query: 1230 aagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgct 1289
|||||||| ||||| |||||||| ||||||||||| |||||||| |||| || || ||
Sbjct: 206 aagctagtagcaaggtcatagtacttattaaccatgtcagtataattggcttttctctct 147
Query: 1290 tcctccttccctccatagtatccatgatatttctcatactcatcgacggc 1339
||||| || ||||||| | | ||||||||| |||||||| ||||||||
Sbjct: 146 tcctcgtttcctccatggaagacatgatattgctcatacttttcgacggc 97
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 863 atcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaa 922
|||||||||||| || ||||| || || || ||||| ||||| ||| |||| || |||
Sbjct: 573 atcaggtgcatggcaagttgcttctattgcataaactgcatcgaaactgttttccgggaa 514
Query: 923 cggcatcttcatgaagtccgccttgacaaaatcacatgt 961
||||||||||||||||| ||||||||||| | ||||||
Sbjct: 513 tggcatcttcatgaagtcagccttgacaaagttacatgt 475
Score = 54.0 bits (27), Expect = 8e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 1031 aagaaatacattggcgtgaaaatctctctccttccaccgtcgactaatccttccgcagcc 972
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 971 tgctccaggaaatttgagaccct 949
>gb|AY120716.1| Arabidopsis thaliana 24-sterol C-methyltransferase (At5g13710) mRNA,
complete cds
Length = 1245
Score = 139 bits (70), Expect = 2e-030
Identities = 235/290 (81%)
Strand = Plus / Minus
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||||||||||||| |||| |||||||| |||||||| || ||||| | ||||| |
Sbjct: 411 aatcttgcaatttccctcaacggtccaccaattccacatcctacatccagtaccttttgt 352
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgt 1169
||||||| | ||||| || || |||||||| ||||| |||||||| || || || ||
Sbjct: 351 cctggttggatgccaagctgaagagcaagaaagtgctcgtgtcgcttaatactctctcga 292
Query: 1170 aaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatag 1229
| |||||||| |||||||| || ||||| ||||||||||| ||||| || ||||||||
Sbjct: 291 agcgattctcctttccatctttgtgcaaaatggaaggattctccccatccgtactcataa 232
Query: 1230 aagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgct 1289
|||||||| ||||| |||||||| ||||||||||| |||||||| |||| || || ||
Sbjct: 231 aagctagtagcaaggtcatagtacttattaaccatgtcagtataattggcttttctctct 172
Query: 1290 tcctccttccctccatagtatccatgatatttctcatactcatcgacggc 1339
||||| || ||||||| | | ||||||||| |||||||| ||||||||
Sbjct: 171 tcctcgtttcctccatggaagacatgatattgctcatacttttcgacggc 122
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 863 atcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaa 922
|||||||||||| || ||||| || || || ||||| ||||| ||| |||| || |||
Sbjct: 598 atcaggtgcatggcaagttgcttctattgcataaactgcatcgaaactgttttccgggaa 539
Query: 923 cggcatcttcatgaagtccgccttgacaaaatcacatgt 961
||||||||||||||||| ||||||||||| | ||||||
Sbjct: 538 tggcatcttcatgaagtcagccttgacaaagttacatgt 500
Score = 54.0 bits (27), Expect = 8e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 1056 aagaaatacattggcgtgaaaatctctctccttccaccgtcgactaatccttccgcagcc 997
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 996 tgctccaggaaatttgagaccct 974
>gb|AF494289.1| Arabidopsis thaliana cephalopod (CPH) mRNA, complete cds
Length = 1080
Score = 139 bits (70), Expect = 2e-030
Identities = 235/290 (81%)
Strand = Plus / Minus
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||||||||||||| |||| |||||||| |||||||| || ||||| | ||||| |
Sbjct: 413 aatcttgcaatttccctcaacggtccaccaattccacatcctacatccagtaccttttgt 354
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgt 1169
||||||| | ||||| || || |||||||| ||||| |||||||| || || || ||
Sbjct: 353 cctggttggatgccaagctgaagagcaagaaagtgctcgtgtcgcttaatactctctcga 294
Query: 1170 aaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatag 1229
| |||||||| |||||||| || ||||| ||||||||||| ||||| || ||||||||
Sbjct: 293 agcgattctcctttccatctttgtgcaaaatggaaggattctccccatccgtactcataa 234
Query: 1230 aagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgct 1289
|||||||| ||||| |||||||| ||||||||||| |||||||| |||| || || ||
Sbjct: 233 aagctagtagcaaggtcatagtacttattaaccatgtcagtataattggcttttctctct 174
Query: 1290 tcctccttccctccatagtatccatgatatttctcatactcatcgacggc 1339
||||| || ||||||| | | ||||||||| |||||||| ||||||||
Sbjct: 173 tcctcgtttcctccatggaagacatgatattgctcatacttttcgacggc 124
Score = 61.9 bits (31), Expect = 3e-007
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || ||||||| || || | ||||| ||||||
Sbjct: 1058 aagaaatacattggcgtgaaaatctctctccttccgccgtcgactaatccttccgcagcc 999
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 998 tgctccaggaaatttgagaccct 976
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 863 atcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaa 922
|||||||||||| || ||||| || || || ||||| ||||| ||| |||| || |||
Sbjct: 600 atcaggtgcatggcaagttgcttctattgcataaactgcatcgaaattgttttccgggaa 541
Query: 923 cggcatcttcatgaagtccgccttgacaaaatcacatgt 961
||||||||||||||||| ||||||||||| | ||||||
Sbjct: 540 tggcatcttcatgaagtcagccttgacaaagttacatgt 502
>gb|BT000058.1| Arabidopsis thaliana 24-sterol C-methyltransferase (At5g13710) mRNA,
complete cds
Length = 1108
Score = 139 bits (70), Expect = 2e-030
Identities = 235/290 (81%)
Strand = Plus / Minus
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||||||||||||| |||| |||||||| |||||||| || ||||| | ||||| |
Sbjct: 344 aatcttgcaatttccctcaacggtccaccaattccacatcctacatccagtaccttttgt 285
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgt 1169
||||||| | ||||| || || |||||||| ||||| |||||||| || || || ||
Sbjct: 284 cctggttggatgccaagctgaagagcaagaaagtgctcgtgtcgcttaatactctctcga 225
Query: 1170 aaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatag 1229
| |||||||| |||||||| || ||||| ||||||||||| ||||| || ||||||||
Sbjct: 224 agcgattctcctttccatctttgtgcaaaatggaaggattctccccatccgtactcataa 165
Query: 1230 aagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgct 1289
|||||||| ||||| |||||||| ||||||||||| |||||||| |||| || || ||
Sbjct: 164 aagctagtagcaaggtcatagtacttattaaccatgtcagtataattggcttttctctct 105
Query: 1290 tcctccttccctccatagtatccatgatatttctcatactcatcgacggc 1339
||||| || ||||||| | | ||||||||| |||||||| ||||||||
Sbjct: 104 tcctcgtttcctccatggaagacatgatattgctcatacttttcgacggc 55
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 863 atcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaa 922
|||||||||||| || ||||| || || || ||||| ||||| ||| |||| || |||
Sbjct: 531 atcaggtgcatggcaagttgcttctattgcataaactgcatcgaaactgttttccgggaa 472
Query: 923 cggcatcttcatgaagtccgccttgacaaaatcacatgt 961
||||||||||||||||| ||||||||||| | ||||||
Sbjct: 471 tggcatcttcatgaagtcagccttgacaaagttacatgt 433
Score = 54.0 bits (27), Expect = 8e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 989 aagaaatacattggcgtgaaaatctctctccttccaccgtcgactaatccttccgcagcc 930
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 929 tgctccaggaaatttgagaccct 907
>emb|BX830674.1|CNS0A0QH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS13ZC03 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1283
Score = 139 bits (70), Expect = 2e-030
Identities = 235/290 (81%)
Strand = Plus / Minus
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||||||||||||| |||| |||||||| |||||||| || ||||| | ||||| |
Sbjct: 395 aatcttgcaatttccctcaacggtccaccaattccacatcctacatccagtaccttttgt 336
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgt 1169
||||||| | ||||| || || |||||||| ||||| |||||||| || || || ||
Sbjct: 335 cctggttggatgccaagctgaagagcaagaaagtgctcgtgtcgcttaatactctctcga 276
Query: 1170 aaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatag 1229
| |||||||| |||||||| || ||||| ||||||||||| ||||| || ||||||||
Sbjct: 275 agcgattctcctttccatctttgtgcaaaatggaaggattctccccatccgtactcataa 216
Query: 1230 aagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgct 1289
|||||||| ||||| |||||||| ||||||||||| |||||||| |||| || || ||
Sbjct: 215 aagctagtagcaaggtcatagtacttattaaccatgtcagtataattggcttttctctct 156
Query: 1290 tcctccttccctccatagtatccatgatatttctcatactcatcgacggc 1339
||||| || ||||||| | | ||||||||| |||||||| ||||||||
Sbjct: 155 tcctcgtttcctccatggaagacatgatattgctcatacttttcgacggc 106
Score = 54.0 bits (27), Expect = 8e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 1040 aagaaatacattggcgtgaaaatctctctccttccaccgtcgactaatccttccgcagcc 981
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 980 tgctccaggaaatttgagaccct 958
Score = 54.0 bits (27), Expect = 8e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 863 atcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaa 922
|||||||||||| | ||||| || || || ||||| ||||| ||| |||| || |||
Sbjct: 582 atcaggtgcatggaaagttgcttctattgcataaactgcatcgaaactgttttccgggaa 523
Query: 923 cggcatcttcatgaagtccgccttgacaaaatcacatgt 961
||||||||||||||||| ||||||||||| | ||||||
Sbjct: 522 tggcatcttcatgaagtcagccttgacaaagttacatgt 484
>emb|BX831439.1|CNS0A23U Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS90ZE01 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1198
Score = 139 bits (70), Expect = 2e-030
Identities = 235/290 (81%)
Strand = Plus / Minus
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||||||||||||| |||| |||||||| |||||||| || ||||| | ||||| |
Sbjct: 370 aatcttgcaatttccctcaacggtccaccaattccacatcctacatccagtaccttttgt 311
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgt 1169
||||||| | ||||| || || |||||||| ||||| |||||||| || || || ||
Sbjct: 310 cctggttggatgccaagctgaagagcaagaaagtgctcgtgtcgcttaatactctctcga 251
Query: 1170 aaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatag 1229
| |||||||| |||||||| || ||||| ||||||||||| ||||| || ||||||||
Sbjct: 250 agcgattctcctttccatctttgtgcaaaatggaaggattctccccatccgtactcataa 191
Query: 1230 aagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgct 1289
|||||||| ||||| |||||||| ||||||||||| |||||||| |||| || || ||
Sbjct: 190 aagctagtagcaaggtcatagtacttattaaccatgtcagtataattggcttttctctct 131
Query: 1290 tcctccttccctccatagtatccatgatatttctcatactcatcgacggc 1339
||||| || ||||||| | | ||||||||| |||||||| ||||||||
Sbjct: 130 tcctcgtttcctccatggaagacatgatattgctcatacttttcgacggc 81
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 863 atcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaa 922
|||||||||||| || ||||| || || || ||||| ||||| ||| |||| || |||
Sbjct: 557 atcaggtgcatggcaagttgcttctattgcataaactgcatcgaaactgttttccgggaa 498
Query: 923 cggcatcttcatgaagtccgccttgacaaaatcacatgt 961
||||||||||||||||| ||||||||||| | ||||||
Sbjct: 497 tggcatcttcatgaagtcagccttgacaaagttacatgt 459
Score = 54.0 bits (27), Expect = 8e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 1015 aagaaatacattggcgtgaaaatctctctccttccaccgtcgactaatccttccgcagcc 956
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 955 tgctccaggaaatttgagaccct 933
>emb|CQ804624.1| Sequence 1035 from Patent WO2004035798
Length = 1011
Score = 139 bits (70), Expect = 2e-030
Identities = 235/290 (81%)
Strand = Plus / Minus
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||||||||||||| |||| |||||||| |||||||| || ||||| | ||||| |
Sbjct: 344 aatcttgcaatttccctcaacggtccaccaattccacatcctacatccagtaccttttgt 285
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgt 1169
||||||| | ||||| || || |||||||| ||||| |||||||| || || || ||
Sbjct: 284 cctggttggatgccaagctgaagagcaagaaagtgctcgtgtcgcttaatactctctcga 225
Query: 1170 aaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatag 1229
| |||||||| |||||||| || ||||| ||||||||||| ||||| || ||||||||
Sbjct: 224 agcgattctcctttccatctttgtgcaaaatggaaggattctccccatccgtactcataa 165
Query: 1230 aagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgct 1289
|||||||| ||||| |||||||| ||||||||||| |||||||| |||| || || ||
Sbjct: 164 aagctagtagcaaggtcatagtacttattaaccatgtcagtataattggcttttctctct 105
Query: 1290 tcctccttccctccatagtatccatgatatttctcatactcatcgacggc 1339
||||| || ||||||| | | ||||||||| |||||||| ||||||||
Sbjct: 104 tcctcgtttcctccatggaagacatgatattgctcatacttttcgacggc 55
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 863 atcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaa 922
|||||||||||| || ||||| || || || ||||| ||||| ||| |||| || |||
Sbjct: 531 atcaggtgcatggcaagttgcttctattgcataaactgcatcgaaactgttttccgggaa 472
Query: 923 cggcatcttcatgaagtccgccttgacaaaatcacatgt 961
||||||||||||||||| ||||||||||| | ||||||
Sbjct: 471 tggcatcttcatgaagtcagccttgacaaagttacatgt 433
Score = 54.0 bits (27), Expect = 8e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 989 aagaaatacattggcgtgaaaatctctctccttccaccgtcgactaatccttccgcagcc 930
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 929 tgctccaggaaatttgagaccct 907
>gb|AF195648.1| Arabidopsis thaliana sterol methyltransferase SMT1 (SMT1) mRNA,
complete cds
Length = 1257
Score = 139 bits (70), Expect = 2e-030
Identities = 235/290 (81%)
Strand = Plus / Minus
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||||||||||||| |||| |||||||| |||||||| || ||||| | ||||| |
Sbjct: 397 aatcttgcaatttccctcaacggtccaccaattccacatcctacatccagtaccttttgt 338
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgt 1169
||||||| | ||||| || || |||||||| ||||| |||||||| || || || ||
Sbjct: 337 cctggttggatgccaagctgaagagcaagaaagtgctcgtgtcgcttaatactctctcga 278
Query: 1170 aaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatag 1229
| |||||||| |||||||| || ||||| ||||||||||| ||||| || ||||||||
Sbjct: 277 agcgattctcctttccatctttgtgcaaaatggaaggattctccccatccgtactcataa 218
Query: 1230 aagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgct 1289
|||||||| ||||| |||||||| ||||||||||| |||||||| |||| || || ||
Sbjct: 217 aagctagtagcaaggtcatagtacttattaaccatgtcagtataattggcttttctctct 158
Query: 1290 tcctccttccctccatagtatccatgatatttctcatactcatcgacggc 1339
||||| || ||||||| | | ||||||||| |||||||| ||||||||
Sbjct: 157 tcctcgtttcctccatggaagacatgatattgctcatacttttcgacggc 108
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 863 atcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaa 922
|||||||||||| || ||||| || || || ||||| ||||| ||| |||| || |||
Sbjct: 584 atcaggtgcatggcaagttgcttctattgcataaactgcatcgaaactgttttccgggaa 525
Query: 923 cggcatcttcatgaagtccgccttgacaaaatcacatgt 961
||||||||||||||||| ||||||||||| | ||||||
Sbjct: 524 tggcatcttcatgaagtcagccttgacaaagttacatgt 486
Score = 54.0 bits (27), Expect = 8e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 1042 aagaaatacattggcgtgaaaatctctctccttccaccgtcgactaatccttccgcagcc 983
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 982 tgctccaggaaatttgagaccct 960
>ref|NM_121374.2| Arabidopsis thaliana SMT1 (STEROL METHYLTRANSFERASE 1) AT5G13710
(SMT1) mRNA, complete cds
Length = 1462
Score = 139 bits (70), Expect = 2e-030
Identities = 235/290 (81%)
Strand = Plus / Minus
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||||||||||||| |||| |||||||| |||||||| || ||||| | ||||| |
Sbjct: 442 aatcttgcaatttccctcaacggtccaccaattccacatcctacatccagtaccttttgt 383
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgt 1169
||||||| | ||||| || || |||||||| ||||| |||||||| || || || ||
Sbjct: 382 cctggttggatgccaagctgaagagcaagaaagtgctcgtgtcgcttaatactctctcga 323
Query: 1170 aaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatag 1229
| |||||||| |||||||| || ||||| ||||||||||| ||||| || ||||||||
Sbjct: 322 agcgattctcctttccatctttgtgcaaaatggaaggattctccccatccgtactcataa 263
Query: 1230 aagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgct 1289
|||||||| ||||| |||||||| ||||||||||| |||||||| |||| || || ||
Sbjct: 262 aagctagtagcaaggtcatagtacttattaaccatgtcagtataattggcttttctctct 203
Query: 1290 tcctccttccctccatagtatccatgatatttctcatactcatcgacggc 1339
||||| || ||||||| | | ||||||||| |||||||| ||||||||
Sbjct: 202 tcctcgtttcctccatggaagacatgatattgctcatacttttcgacggc 153
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 863 atcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaa 922
|||||||||||| || ||||| || || || ||||| ||||| ||| |||| || |||
Sbjct: 629 atcaggtgcatggcaagttgcttctattgcataaactgcatcgaaactgttttccgggaa 570
Query: 923 cggcatcttcatgaagtccgccttgacaaaatcacatgt 961
||||||||||||||||| ||||||||||| | ||||||
Sbjct: 569 tggcatcttcatgaagtcagccttgacaaagttacatgt 531
Score = 54.0 bits (27), Expect = 8e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 1087 aagaaatacattggcgtgaaaatctctctccttccaccgtcgactaatccttccgcagcc 1028
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 1027 tgctccaggaaatttgagaccct 1005
>gb|BT015538.1| Arabidopsis thaliana At5g13710 mRNA sequence
Length = 1008
Score = 131 bits (66), Expect = 4e-028
Identities = 234/290 (80%)
Strand = Plus / Minus
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcatt 1109
|||||||||||||| |||| |||||||| |||||||| || ||||| | ||| | |
Sbjct: 341 aatcttgcaatttccctcaacggtccaccaattccacatcctacatccagtaccgtttgt 282
Query: 1110 cctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgt 1169
||||||| | ||||| || || |||||||| ||||| |||||||| || || || ||
Sbjct: 281 cctggttggatgccaagctgaagagcaagaaagtgctcgtgtcgcttaatactctctcga 222
Query: 1170 aaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatag 1229
| |||||||| |||||||| || ||||| ||||||||||| ||||| || ||||||||
Sbjct: 221 agcgattctcctttccatctttgtgcaaaatggaaggattctccccatccgtactcataa 162
Query: 1230 aagctagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgct 1289
|||||||| ||||| |||||||| ||||||||||| |||||||| |||| || || ||
Sbjct: 161 aagctagtagcaaggtcatagtacttattaaccatgtcagtataattggcttttctctct 102
Query: 1290 tcctccttccctccatagtatccatgatatttctcatactcatcgacggc 1339
||||| || ||||||| | | ||||||||| |||||||| ||||||||
Sbjct: 101 tcctcgtttcctccatggaagacatgatattgctcatacttttcgacggc 52
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 863 atcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaa 922
|||||||||||| || ||||| || || || ||||| ||||| ||| |||| || |||
Sbjct: 528 atcaggtgcatggcaagttgcttctattgcataaactgcatcgaaactgttttccgggaa 469
Query: 923 cggcatcttcatgaagtccgccttgacaaaatcacatgt 961
||||||||||||||||| ||||||||||| | ||||||
Sbjct: 468 tggcatcttcatgaagtcagccttgacaaagttacatgt 430
Score = 54.0 bits (27), Expect = 8e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 986 aagaaatacattggcgtgaaaatctctctccttccaccgtcgactaatccttccgcagcc 927
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 926 tgctccaggaaatttgagaccct 904
>gb|BP868811.1|BP868811 BP868811 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-85-K07 5',
mRNA sequence
Length = 383
Score = 123 bits (62), Expect = 1e-025
Identities = 170/206 (82%)
Strand = Plus / Minus
Query: 1134 gcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattccatctgtga 1193
|||||||| ||||| |||||||| || || || || | |||||||| |||||||| ||
Sbjct: 341 gcaagaaagtgctcgtgtcgcttaatactctctcgaagcgattctcctttccatctttgt 282
Query: 1194 gcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaagatcatagtat 1253
||||| ||||||||||| ||||| || |||||||| |||||||| ||||| ||||||||
Sbjct: 281 gcaaaatggaaggattctccccatccgtactcataaaagctagtagcaaggtcatagtac 222
Query: 1254 ttattaaccatatcagtatagttggacttccttgcttcctccttccctccatagtatcca 1313
||||||||||| |||||||| |||| || || ||||||| || ||||||| | | ||
Sbjct: 221 ttattaaccatgtcagtataattggcttttctctcttcctcgtttcctccatggaagaca 162
Query: 1314 tgatatttctcatactcatcgacggc 1339
||||||| |||||||| ||||||||
Sbjct: 161 tgatattgctcatacttttcgacggc 136
>gb|AV527723.1|AV527723 AV527723 Arabidopsis thaliana aboveground organs two to six-week old
Arabidopsis thaliana cDNA clone APZ43c07R 5', mRNA
sequence
Length = 318
Score = 117 bits (59), Expect = 6e-024
Identities = 140/167 (83%)
Strand = Plus / Minus
Query: 1173 gattctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatagaag 1232
|||||||| |||||||| || ||||| ||||||||||| ||||| || |||||||| |||
Sbjct: 287 gattctcctttccatctttgtgcaaaatggaaggattctccccatccgtactcataaaag 228
Query: 1233 ctagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgcttcc 1292
||||| ||||| |||||||| ||||||||||| |||||||| |||| || || |||||
Sbjct: 227 ctagtagcaaggtcatagtacttattaaccatgtcagtataattggcttttctctcttcc 168
Query: 1293 tccttccctccatagtatccatgatatttctcatactcatcgacggc 1339
|| || ||||||| | | ||||||||| |||||||| ||||||||
Sbjct: 167 tcgtttcctccatggaagacatgatattgctcatacttttcgacggc 121
>gb|BP866348.1|BP866348 BP866348 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-77-G19 5',
mRNA sequence
Length = 381
Score = 115 bits (58), Expect = 2e-023
Identities = 169/206 (82%)
Strand = Plus / Minus
Query: 1134 gcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattccatctgtga 1193
|||||||| ||||| |||||||| || || || || | |||||||| |||||||| ||
Sbjct: 341 gcaagaaagtgctcgtgtcgcttaatactctctcgaagcgattctcctttccatctttgt 282
Query: 1194 gcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaagatcatagtat 1253
||||| ||||||||||| ||||| || |||||||| |||||||| ||||| ||||||||
Sbjct: 281 gcaaaatggaaggattctccccatccgtactcataaaagctagtagcaaggtcatagtac 222
Query: 1254 ttattaaccatatcagtatagttggacttccttgcttcctccttccctccatagtatcca 1313
||||||||||| ||| |||| |||| || || ||||||| || ||||||| | | ||
Sbjct: 221 ttattaaccatgtcactataattggcttttctctcttcctcgtttcctccatggaagaca 162
Query: 1314 tgatatttctcatactcatcgacggc 1339
||||||| |||||||| ||||||||
Sbjct: 161 tgatattgctcatacttttcgacggc 136
>dbj|AB006704.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSH12
Length = 79259
Score = 73.8 bits (37), Expect = 8e-011
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 1194 gcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaagatcatagtat 1253
||||| ||||||||||| ||||| || |||||||| |||||||| ||||| ||||||||
Sbjct: 69035 gcaaaatggaaggattctccccatccgtactcataaaagctagtagcaaggtcatagtac 69094
Query: 1254 ttattaacc 1262
|||||||||
Sbjct: 69095 ttattaacc 69103
Score = 46.1 bits (23), Expect = 0.019
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatc 1096
|||||||||||||| |||| |||||||| |||||||| || |||||
Sbjct: 68707 aatcttgcaatttccctcaacggtccaccaattccacatcctacatc 68753
Score = 46.1 bits (23), Expect = 0.019
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 863 atcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaa 922
|||||||||||| || ||||| || || || ||||| ||||| ||| |||| || |||
Sbjct: 68181 atcaggtgcatggcaagttgcttctattgcataaactgcatcgaaactgttttccgggaa 68240
Query: 923 cggcatcttcatgaagtccgcct 945
||||||||||||||||| ||||
Sbjct: 68241 tggcatcttcatgaagtcagcct 68263
Score = 46.1 bits (23), Expect = 0.019
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 453 ccttctgcagccttctccaggaaattagagaccct 487
||||| ||||||| |||||||||||| ||||||||
Sbjct: 67429 ccttccgcagcctgctccaggaaatttgagaccct 67463
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 73.8 bits (37), Expect = 8e-011
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 1194 gcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaagatcatagtat 1253
||||| ||||||||||| ||||| || |||||||| |||||||| ||||| ||||||||
Sbjct: 4238805 gcaaaatggaaggattctccccatccgtactcataaaagctagtagcaaggtcatagtac 4238864
Query: 1254 ttattaacc 1262
|||||||||
Sbjct: 4238865 ttattaacc 4238873
Score = 46.1 bits (23), Expect = 0.019
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatc 1096
|||||||||||||| |||| |||||||| |||||||| || |||||
Sbjct: 4238477 aatcttgcaatttccctcaacggtccaccaattccacatcctacatc 4238523
Score = 46.1 bits (23), Expect = 0.019
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 863 atcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaa 922
|||||||||||| || ||||| || || || ||||| ||||| ||| |||| || |||
Sbjct: 4237951 atcaggtgcatggcaagttgcttctattgcataaactgcatcgaaactgttttccgggaa 4238010
Query: 923 cggcatcttcatgaagtccgcct 945
||||||||||||||||| ||||
Sbjct: 4238011 tggcatcttcatgaagtcagcct 4238033
Score = 46.1 bits (23), Expect = 0.019
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 453 ccttctgcagccttctccaggaaattagagaccct 487
||||| ||||||| |||||||||||| ||||||||
Sbjct: 4237199 ccttccgcagcctgctccaggaaatttgagaccct 4237233
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 73.8 bits (37), Expect = 8e-011
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 1194 gcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaagatcatagtat 1253
||||| ||||||||||| ||||| || |||||||| |||||||| ||||| ||||||||
Sbjct: 4425832 gcaaaatggaaggattctccccatccgtactcataaaagctagtagcaaggtcatagtac 4425891
Query: 1254 ttattaacc 1262
|||||||||
Sbjct: 4425892 ttattaacc 4425900
Score = 46.1 bits (23), Expect = 0.019
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1050 aatcttgcaatttctctcagtggtccacctattccacagcccacatc 1096
|||||||||||||| |||| |||||||| |||||||| || |||||
Sbjct: 4425504 aatcttgcaatttccctcaacggtccaccaattccacatcctacatc 4425550
Score = 46.1 bits (23), Expect = 0.019
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 863 atcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaa 922
|||||||||||| || ||||| || || || ||||| ||||| ||| |||| || |||
Sbjct: 4424978 atcaggtgcatggcaagttgcttctattgcataaactgcatcgaaactgttttccgggaa 4425037
Query: 923 cggcatcttcatgaagtccgcct 945
||||||||||||||||| ||||
Sbjct: 4425038 tggcatcttcatgaagtcagcct 4425060
Score = 46.1 bits (23), Expect = 0.019
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 453 ccttctgcagccttctccaggaaattagagaccct 487
||||| ||||||| |||||||||||| ||||||||
Sbjct: 4424226 ccttccgcagcctgctccaggaaatttgagaccct 4424260
>gb|AV557319.1|AV557319 AV557319 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ065f05F 3', mRNA sequence
Length = 538
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 863 atcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcgaa 922
|||||||||||| || ||||| || || || ||||| ||||| ||| |||| || |||
Sbjct: 100 atcaggtgcatggcaagttgcttctattgcataaactgcatcgaaactgttttccgggaa 41
Query: 923 cggcatcttcatgaagtccgccttgacaaaatcacatgt 961
||||||||||||||||| ||||||||||| | ||||||
Sbjct: 40 tggcatcttcatgaagtcagccttgacaaagttacatgt 2
>gb|BE527299.1|BE527299 M68G13STM Arabidopsis developing seed Arabidopsis thaliana cDNA clone
600036152R1 5', mRNA sequence
Length = 247
Score = 54.0 bits (27), Expect = 8e-005
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 1245 tcatagtatttattaaccatatcagtatagttggacttccttgcttcctccttccctcca 1304
|||||||| ||||||||||| |||||||| |||| || || ||||||| || ||||||
Sbjct: 247 tcatagtacttattaaccatgtcagtataattggcttttctctcttcctcgtttcctcca 188
Query: 1305 tagtatccatgatatttctcatactcatcgacggc 1339
| | | ||||||||| |||||||| ||||||||
Sbjct: 187 tggaagacatgatattgctcatacttttcgacggc 153
>gb|AV783910.1|AV783910 AV783910 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-14-G19 3',
mRNA sequence
Length = 696
Score = 54.0 bits (27), Expect = 8e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 191 aagaaatacattggcgtgaaaatctctctccttccaccgtcgactaatccttccgcagcc 250
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 251 tgctccaggaaatttgagaccct 273
>gb|AV792929.1|AV792929 AV792929 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-17-F10 3',
mRNA sequence
Length = 441
Score = 54.0 bits (27), Expect = 8e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 242 aagaaatacattggcgtgaaaatctctctccttccaccgtcgactaatccttccgcagcc 301
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 302 tgctccaggaaatttgagaccct 324
>gb|AV793116.1|AV793116 AV793116 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-18-C18 3',
mRNA sequence
Length = 422
Score = 54.0 bits (27), Expect = 8e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 216 aagaaatacattggcgtgaaaatctctctccttccaccgtcgactaatccttccgcagcc 275
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 276 tgctccaggaaatttgagaccct 298
>gb|AV534102.1|AV534102 AV534102 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB074a03F 3', mRNA sequence
Length = 410
Score = 54.0 bits (27), Expect = 8e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 191 aagaaatacattggcgtgaaaatctctctccttccaccgtcgactaatccttccgcagcc 250
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 251 tgctccaggaaatttgagaccct 273
>gb|AV542004.1|AV542004 AV542004 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ175e03F 3', mRNA sequence
Length = 476
Score = 54.0 bits (27), Expect = 8e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 228 aagaaatacattggcgtgaaaatctctctccttccaccgtcgactaatccttccgcagcc 287
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 288 tgctccaggaaatttgagaccct 310
>gb|AV566923.1|AV566923 AV566923 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQL03a12F 3', mRNA sequence
Length = 514
Score = 54.0 bits (27), Expect = 8e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 315 aagaaatacattggcgtgaaaatctctctccttccaccgtcgactaatccttccgcagcc 374
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 375 tgctccaggaaatttgagaccct 397
>gb|BP597580.1|BP597580 BP597580 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-40-C05 3',
mRNA sequence
Length = 430
Score = 54.0 bits (27), Expect = 8e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 216 aagaaatacattggcgtgaaaatctctctccttccaccgtcgactaatccttccgcagcc 275
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 276 tgctccaggaaatttgagaccct 298
>gb|BP598785.1|BP598785 BP598785 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-04-K07 3',
mRNA sequence
Length = 438
Score = 54.0 bits (27), Expect = 8e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 216 aagaaatacattggcgtgaaaatctcactccttccaccgtcgactaatccttccgcagcc 275
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 276 tgctccaggaaatttgagaccct 298
>gb|BP615618.1|BP615618 BP615618 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-16-I02 3',
mRNA sequence
Length = 425
Score = 54.0 bits (27), Expect = 8e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| || ||||||||||| ||||| ||||||| || || || | ||||| ||||||
Sbjct: 214 aagaaataaattggcgtgaaaatctcactctttccaccgtcgactaatccttcggcagcc 273
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 274 tgctccaggaaatttgagaccct 296
>gb|BP620510.1|BP620510 BP620510 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-37-J17 3',
mRNA sequence
Length = 432
Score = 54.0 bits (27), Expect = 8e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 233 aagaaatacattggcgtgaaaatctctctccttccaccgtcgactaatccttccgcagcc 292
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 293 tgctccaggaaatttgagaccct 315
>gb|BP783988.1|BP783988 BP783988 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-88-O11 3',
mRNA sequence
Length = 429
Score = 54.0 bits (27), Expect = 8e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 233 aagaaatacattggcgtgaaaatctctctccttccaccgtcgactaatccttccgcagcc 292
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 293 tgctccaggaaatttgagaccct 315
>gb|BP789685.1|BP789685 BP789685 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-40-B09 3',
mRNA sequence
Length = 403
Score = 54.0 bits (27), Expect = 8e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 217 aagaaatacattggcgtgaaaatctctctccttccaccgtcgactaatccttccgcagcc 276
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 277 tgctccaggaaatttgagaccct 299
>gb|BP792711.1|BP792711 BP792711 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-53-B08 3',
mRNA sequence
Length = 367
Score = 54.0 bits (27), Expect = 8e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 217 aagaaatacattggcgtgaaaatctctctccttccaccgtcgactaatccttccgcagcc 276
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 277 tgctccaggaaatttgagaccct 299
>gb|BP794424.1|BP794424 BP794424 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-60-H11 3',
mRNA sequence
Length = 424
Score = 54.0 bits (27), Expect = 8e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 227 aagaaatacattggcgtgaaaatctctctccttccaccgtcgactaatccttccgcagcc 286
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 287 tgctccaggaaatttgagaccct 309
>gb|BP581371.1|BP581371 BP581371 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-31-K10 3',
mRNA sequence
Length = 471
Score = 48.1 bits (24), Expect = 0.005
Identities = 70/84 (83%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgcc-ctctaccagcccttctgcagc 463
||||| |||||||||||||| ||||| || |||| || ||| || | ||||| |||||
Sbjct: 311 aagaaatacattggcgtgaaaatctctctccttccaccgctcgactaatccttccgcagc 370
Query: 464 cttctccaggaaattagagaccct 487
|| |||||||||||| ||||||||
Sbjct: 371 ctgctccaggaaatttgagaccct 394
>gb|AV440506.1|AV440506 AV440506 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APD65h01_f 3', mRNA
sequence
Length = 303
Score = 46.1 bits (23), Expect = 0.019
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 453 ccttctgcagccttctccaggaaattagagaccct 487
||||| ||||||| |||||||||||| ||||||||
Sbjct: 204 ccttccgcagcctgctccaggaaatttgagaccct 238
>gb|BP597969.1|BP597969 BP597969 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-01-L09 3',
mRNA sequence
Length = 418
Score = 46.1 bits (23), Expect = 0.019
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 216 aagaaatacattggcgtgaaaatctcactccttccaccgtcgactaatccttccgcagcc 275
Query: 465 ttctccaggaaattagagaccct 487
| ||||||||||| ||||||||
Sbjct: 276 tggtccaggaaatttgagaccct 298
>gb|BP623972.1|BP623972 BP623972 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-38-I02 3',
mRNA sequence
Length = 401
Score = 46.1 bits (23), Expect = 0.019
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 453 ccttctgcagccttctccaggaaattagagaccct 487
||||| ||||||| |||||||||||| ||||||||
Sbjct: 320 ccttccgcagcctgctccaggaaatttgagaccct 354
>gb|BP631830.1|BP631830 BP631830 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-25-A03 3',
mRNA sequence
Length = 352
Score = 46.1 bits (23), Expect = 0.019
Identities = 69/83 (83%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 252 aagaaatacattggcgtgaaaatctctctccttccaccgtcgactaatccttc-gcagcc 310
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 311 tgctccaggaaatttgagaccct 333
>gb|BP644461.1|BP644461 BP644461 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-65-I06 3',
mRNA sequence
Length = 408
Score = 46.1 bits (23), Expect = 0.019
Identities = 69/83 (83%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 405 aagaagtacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagcc 464
||||| |||||||||||||| ||||| || |||| || || || | ||||| ||||||
Sbjct: 245 aagaaatacattggcgtgaaaatctctctccttccaccgtcgactaatccttc-gcagcc 303
Query: 465 ttctccaggaaattagagaccct 487
| |||||||||||| ||||||||
Sbjct: 304 tgctccaggaaatttgagaccct 326
>gb|BP788087.1|BP788087 BP788087 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-32-A11 3',
mRNA sequence
Length = 421
Score = 46.1 bits (23), Expect = 0.019
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 453 ccttctgcagccttctccaggaaattagagaccct 487
||||| ||||||| |||||||||||| ||||||||
Sbjct: 315 ccttccgcagcctgctccaggaaatttgagaccct 349
>emb|BX833706.1|CNS0A26T Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL72ZA01 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 724
Score = 46.1 bits (23), Expect = 0.019
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 413 cattggcgtgaagatctccttctttccgccctctaccagcccttctgcagccttctccag 472
|||||||||||| ||||| || |||| || || || | ||||| ||||||| ||||||
Sbjct: 497 cattggcgtgaaaatctctctccttccaccgtcgactaatccttccgcagcctgctccag 438
Query: 473 gaaattagagaccct 487
|||||| ||||||||
Sbjct: 437 gaaatttgagaccct 423
>gb|AV821091.1|AV821091 AV821091 RAFL2 Arabidopsis thaliana cDNA clone RAFL02-01-C03 5',
mRNA sequence
Length = 707
Score = 42.1 bits (21), Expect = 0.30
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 903 tcaaaagtgttgtcatcgaacggcatctt 931
||||| ||||| |||||||||||||||||
Sbjct: 634 tcaaacgtgttttcatcgaacggcatctt 606
>gb|CB262826.1|CB262826 46-E8862-008-010-E14-pBl2 MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767E1410Q 5-PRIME, mRNA sequence
Length = 526
Score = 42.1 bits (21), Expect = 0.30
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 903 tcaaaagtgttgtcatcgaacggcatctt 931
||||| ||||| |||||||||||||||||
Sbjct: 132 tcaaacgtgttttcatcgaacggcatctt 104
>gb|CB264457.1|CB264457 61-E014996-035-003-J16-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA
clone MPIZp2000J163Q 5-PRIME, mRNA sequence
Length = 636
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 910 tgttgtcatcgaacggcatct 930
|||||||||||||||||||||
Sbjct: 614 tgttgtcatcgaacggcatct 594
>gb|CF652694.1|CF652694 71-L020166-066-001-N17-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001N171Q 5-PRIME, mRNA sequence
Length = 722
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 910 tgttgtcatcgaacggcatct 930
|||||||||||||||||||||
Sbjct: 591 tgttgtcatcgaacggcatct 571
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 758,646
Number of Sequences: 1013581
Number of extensions: 758646
Number of successful extensions: 56864
Number of sequences better than 0.5: 94
Number of HSP's better than 0.5 without gapping: 94
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 54728
Number of HSP's gapped (non-prelim): 2099
length of query: 1617
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1596
effective length of database: 887,655,671
effective search space: 1416698450916
effective search space used: 1416698450916
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)