BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404928.2.2
(1151 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BT005735.1| Arabidopsis thaliana clone RAFL15-47-M19 (R2... 82 2e-013
emb|BX817089.1|CNS0AAH9 Arabidopsis thaliana Full-length cD... 82 2e-013
gb|BT015924.1| Arabidopsis thaliana At1g62740 gene, complet... 82 2e-013
gb|BT020538.1| Arabidopsis thaliana At1g62740 gene, complet... 82 2e-013
ref|NM_104951.2| Arabidopsis thaliana unknown protein AT1G6... 82 2e-013
gb|B11714.1|B11714 F6N12-Sp6 IGF Arabidopsis thaliana genom... 78 4e-012
emb|AL083313.1|CNS00OK3 Arabidopsis thaliana genome survey ... 78 4e-012
gb|AQ957820.1|AQ957820 LERAR86TF LERA Arabidopsis thaliana ... 78 4e-012
gb|AC007190.4|AC007190 Genomic sequence for Arabidopsis tha... 78 4e-012
emb|BX815512.1|CNS0ABEK Arabidopsis thaliana Full-length cD... 78 4e-012
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 78 4e-012
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 78 4e-012
gb|T20791.1|T20791 2799 Lambda-PRL2 Arabidopsis thaliana cD... 72 2e-010
gb|AY140001.1| Arabidopsis thaliana stress-induced protein ... 72 2e-010
dbj|BD248411.1| Gene participating in tolerance against env... 72 2e-010
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 72 2e-010
emb|AL080318.1|ATT4C9 Arabidopsis thaliana DNA chromosome 4... 72 2e-010
emb|AL049730.2|ATT1P17 Arabidopsis thaliana DNA chromosome ... 72 2e-010
emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosom... 72 2e-010
ref|NM_117310.2| Arabidopsis thaliana unknown protein AT4G1... 72 2e-010
ref|NM_001036543.1| Arabidopsis thaliana unknown protein AT... 72 2e-010
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 72 2e-010
gb|AQ958237.1|AQ958237 LERAW27TR LERA Arabidopsis thaliana ... 64 6e-008
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 64 6e-008
gb|AY064967.1| Arabidopsis thaliana At1g12270/F5O11_1 mRNA,... 64 6e-008
gb|BT000651.1| Arabidopsis thaliana At1g12270/F5O11_1 mRNA,... 64 6e-008
gb|AC025416.4|AC025416 Genomic sequence for Arabidopsis tha... 64 6e-008
emb|AJ319538.1|ATH319538 Arabidopsis thaliana partial mRNA ... 64 6e-008
ref|NM_101099.4| Arabidopsis thaliana unknown protein AT1G1... 64 6e-008
emb|BX288806.1| Arabidopsis thaliana T-DNA flanking sequenc... 60 9e-007
emb|AJ834186.1| Arabidopsis thaliana T-DNA flanking sequenc... 56 1e-005
emb|AJ834247.1| Arabidopsis thaliana T-DNA flanking sequenc... 56 1e-005
emb|AJ834558.1| Arabidopsis thaliana T-DNA flanking sequenc... 56 1e-005
gb|AA040981.1|AA040981 24247 CD4-13 Arabidopsis thaliana cD... 52 2e-004
gb|AV536410.1|AV536410 AV536410 Arabidopsis thaliana liquid... 52 2e-004
gb|AV537240.1|AV537240 AV537240 Arabidopsis thaliana liquid... 52 2e-004
gb|AV544844.1|AV544844 AV544844 Arabidopsis thaliana roots ... 52 2e-004
gb|AV562107.1|AV562107 AV562107 Arabidopsis thaliana green ... 52 2e-004
gb|BP654313.1|BP654313 BP654313 RAFL19 Arabidopsis thaliana... 52 2e-004
gb|BH169340.1|BH169340 SALK_001113 Arabidopsis thaliana TDN... 50 9e-004
gb|AV802721.1|AV802721 AV802721 RAFL9 Arabidopsis thaliana ... 50 9e-004
gb|AV562691.1|AV562691 AV562691 Arabidopsis thaliana green ... 50 9e-004
gb|AV565803.1|AV565803 AV565803 Arabidopsis thaliana green ... 50 9e-004
gb|BP632289.1|BP632289 BP632289 RAFL17 Arabidopsis thaliana... 46 0.013
gb|AV555790.1|AV555790 AV555790 Arabidopsis thaliana green ... 44 0.053
gb|AV564598.1|AV564598 AV564598 Arabidopsis thaliana green ... 44 0.053
>gb|BT005735.1| Arabidopsis thaliana clone RAFL15-47-M19 (R20937) putative TPR-repeat
protein (At1g62740) mRNA, complete cds
Length = 1924
Score = 81.8 bits (41), Expect = 2e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 839 ttttgctccttgaagaactcgttgcctttctctctctcctcatctgctaattttggatca 898
||||||||||| || || || || |||||||| | ||||||||| | | || ||||||
Sbjct: 1255 ttttgctccttaaaaaagtcattacctttctcacgctcctcatcaccgatattaggatca 1196
Query: 899 tagtactcttgttgctccaactcttttttcgctctctcagcctcattca 947
||||||||||| |||||||||||||| || |||||||| ||||||||||
Sbjct: 1195 tagtactcttgctgctccaactctttctttgctctctctgcctcattca 1147
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 404 ttctcctggaaatcatttagcacctgtctcatgatagggtcggtaagaatgttctggatc 463
|||||||||| |||| || ||||||||||| | ||| || || ||||||||||| ||
Sbjct: 1690 ttctcctggagatcagacagtacctgtctcattacaggatctgtgagaatgttctgaatt 1631
Query: 464 tctgggtcttgcat 477
||||||||||||||
Sbjct: 1630 tctgggtcttgcat 1617
Score = 52.0 bits (26), Expect = 2e-004
Identities = 86/106 (81%)
Strand = Plus / Minus
Query: 558 taacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggttt 617
||||||||||||| ||||||||||| || || ||||| | || || ||| || ||||
Sbjct: 1536 taacaccatcaagaagttcctggttattaggatcatgttcgagacccttctggtacgttt 1477
Query: 618 ccatggccttgtcatattctttcatgaagaattgaattgcaccttt 663
|||| || |||||||| || ||||||||||| || | |||||||||
Sbjct: 1476 ccattgcattgtcatactccttcatgaagaactggactgcaccttt 1431
Score = 50.1 bits (25), Expect = 9e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1081 catcttgaaatcagcacgaagttctcttcccctctccacagccttatcacagtccttgat 1140
||||||| |||||| | ||| ||||| ||||| || |||||||||||||| ||||||||
Sbjct: 1013 catcttgtaatcagacctaagctctctacccctttcaacagccttatcacaatccttgat 954
Query: 1141 gcattcatc 1149
|| |||||
Sbjct: 953 acactcatc 945
>emb|BX817089.1|CNS0AAH9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH85ZA09 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1858
Score = 81.8 bits (41), Expect = 2e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 839 ttttgctccttgaagaactcgttgcctttctctctctcctcatctgctaattttggatca 898
||||||||||| || || || || |||||||| | ||||||||| | | || ||||||
Sbjct: 1250 ttttgctccttaaaaaagtcattacctttctcacgctcctcatcaccgatattaggatca 1191
Query: 899 tagtactcttgttgctccaactcttttttcgctctctcagcctcattca 947
||||||||||| |||||||||||||| || |||||||| ||||||||||
Sbjct: 1190 tagtactcttgctgctccaactctttctttgctctctctgcctcattca 1142
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 404 ttctcctggaaatcatttagcacctgtctcatgatagggtcggtaagaatgttctggatc 463
|||||||||| |||| || ||||||||||| | ||| || || ||||||||||| ||
Sbjct: 1684 ttctcctggagatcagacagtacctgtctcattacaggatctgtgagaatgttctgaatt 1625
Query: 464 tctgggtcttgcat 477
||||||||||||||
Sbjct: 1624 tctgggtcttgcat 1611
Score = 52.0 bits (26), Expect = 2e-004
Identities = 86/106 (81%)
Strand = Plus / Minus
Query: 558 taacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggttt 617
||||||||||||| ||||||||||| || || ||||| | || || ||| || ||||
Sbjct: 1530 taacaccatcaagaagttcctggttattaggatcatgttcgagacccttctggtacgttt 1471
Query: 618 ccatggccttgtcatattctttcatgaagaattgaattgcaccttt 663
|||| || |||||||| || ||||||||||| || | |||||||||
Sbjct: 1470 ccattgcattgtcatactccttcatgaagaactggactgcaccttt 1425
Score = 50.1 bits (25), Expect = 9e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1081 catcttgaaatcagcacgaagttctcttcccctctccacagccttatcacagtccttgat 1140
||||||| |||||| | ||| ||||| ||||| || |||||||||||||| ||||||||
Sbjct: 1008 catcttgtaatcagacctaagctctctacccctttcaacagccttatcacaatccttgat 949
Query: 1141 gcattcatc 1149
|| |||||
Sbjct: 948 acactcatc 940
>gb|BT015924.1| Arabidopsis thaliana At1g62740 gene, complete cds
Length = 1716
Score = 81.8 bits (41), Expect = 2e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 839 ttttgctccttgaagaactcgttgcctttctctctctcctcatctgctaattttggatca 898
||||||||||| || || || || |||||||| | ||||||||| | | || ||||||
Sbjct: 1190 ttttgctccttaaaaaagtcattacctttctcacgctcctcatcaccgatattaggatca 1131
Query: 899 tagtactcttgttgctccaactcttttttcgctctctcagcctcattca 947
||||||||||| |||||||||||||| || |||||||| ||||||||||
Sbjct: 1130 tagtactcttgctgctccaactctttctttgctctctctgcctcattca 1082
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 404 ttctcctggaaatcatttagcacctgtctcatgatagggtcggtaagaatgttctggatc 463
|||||||||| |||| || ||||||||||| | ||| || || ||||||||||| ||
Sbjct: 1625 ttctcctggagatcagacagtacctgtctcattacaggatctgtgagaatgttctgaatt 1566
Query: 464 tctgggtcttgcat 477
||||||||||||||
Sbjct: 1565 tctgggtcttgcat 1552
Score = 52.0 bits (26), Expect = 2e-004
Identities = 86/106 (81%)
Strand = Plus / Minus
Query: 558 taacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggttt 617
||||||||||||| ||||||||||| || || ||||| | || || ||| || ||||
Sbjct: 1471 taacaccatcaagaagttcctggttattaggatcatgttcgagacccttctggtacgttt 1412
Query: 618 ccatggccttgtcatattctttcatgaagaattgaattgcaccttt 663
|||| || |||||||| || ||||||||||| || | |||||||||
Sbjct: 1411 ccattgcattgtcatactccttcatgaagaactggactgcaccttt 1366
Score = 50.1 bits (25), Expect = 9e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1081 catcttgaaatcagcacgaagttctcttcccctctccacagccttatcacagtccttgat 1140
||||||| |||||| | ||| ||||| ||||| || |||||||||||||| ||||||||
Sbjct: 948 catcttgtaatcagacctaagctctctacccctttcaacagccttatcacaatccttgat 889
Query: 1141 gcattcatc 1149
|| |||||
Sbjct: 888 acactcatc 880
>gb|BT020538.1| Arabidopsis thaliana At1g62740 gene, complete cds
Length = 1795
Score = 81.8 bits (41), Expect = 2e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 839 ttttgctccttgaagaactcgttgcctttctctctctcctcatctgctaattttggatca 898
||||||||||| || || || || |||||||| | ||||||||| | | || ||||||
Sbjct: 1260 ttttgctccttaaaaaagtcattacctttctcacgctcctcatcaccgatattaggatca 1201
Query: 899 tagtactcttgttgctccaactcttttttcgctctctcagcctcattca 947
||||||||||| |||||||||||||| || |||||||| ||||||||||
Sbjct: 1200 tagtactcttgctgctccaactctttctttgctctctctgcctcattca 1152
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 404 ttctcctggaaatcatttagcacctgtctcatgatagggtcggtaagaatgttctggatc 463
|||||||||| |||| || ||||||||||| | ||| || || ||||||||||| ||
Sbjct: 1695 ttctcctggagatcagacagtacctgtctcattacaggatctgtgagaatgttctgaatt 1636
Query: 464 tctgggtcttgcat 477
||||||||||||||
Sbjct: 1635 tctgggtcttgcat 1622
Score = 52.0 bits (26), Expect = 2e-004
Identities = 86/106 (81%)
Strand = Plus / Minus
Query: 558 taacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggttt 617
||||||||||||| ||||||||||| || || ||||| | || || ||| || ||||
Sbjct: 1541 taacaccatcaagaagttcctggttattaggatcatgttcgagacccttctggtacgttt 1482
Query: 618 ccatggccttgtcatattctttcatgaagaattgaattgcaccttt 663
|||| || |||||||| || ||||||||||| || | |||||||||
Sbjct: 1481 ccattgcattgtcatactccttcatgaagaactggactgcaccttt 1436
Score = 50.1 bits (25), Expect = 9e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1081 catcttgaaatcagcacgaagttctcttcccctctccacagccttatcacagtccttgat 1140
||||||| |||||| | ||| ||||| ||||| || |||||||||||||| ||||||||
Sbjct: 1018 catcttgtaatcagacctaagctctctacccctttcaacagccttatcacaatccttgat 959
Query: 1141 gcattcatc 1149
|| |||||
Sbjct: 958 acactcatc 950
>ref|NM_104951.2| Arabidopsis thaliana unknown protein AT1G62740 mRNA, complete cds
Length = 2185
Score = 81.8 bits (41), Expect = 2e-013
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 839 ttttgctccttgaagaactcgttgcctttctctctctcctcatctgctaattttggatca 898
||||||||||| || || || || |||||||| | ||||||||| | | || ||||||
Sbjct: 1255 ttttgctccttaaaaaagtcattacctttctcacgctcctcatcaccgatattaggatca 1196
Query: 899 tagtactcttgttgctccaactcttttttcgctctctcagcctcattca 947
||||||||||| |||||||||||||| || |||||||| ||||||||||
Sbjct: 1195 tagtactcttgctgctccaactctttctttgctctctctgcctcattca 1147
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 404 ttctcctggaaatcatttagcacctgtctcatgatagggtcggtaagaatgttctggatc 463
|||||||||| |||| || ||||||||||| | ||| || || ||||||||||| ||
Sbjct: 1690 ttctcctggagatcagacagtacctgtctcattacaggatctgtgagaatgttctgaatt 1631
Query: 464 tctgggtcttgcat 477
||||||||||||||
Sbjct: 1630 tctgggtcttgcat 1617
Score = 52.0 bits (26), Expect = 2e-004
Identities = 86/106 (81%)
Strand = Plus / Minus
Query: 558 taacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggttt 617
||||||||||||| ||||||||||| || || ||||| | || || ||| || ||||
Sbjct: 1536 taacaccatcaagaagttcctggttattaggatcatgttcgagacccttctggtacgttt 1477
Query: 618 ccatggccttgtcatattctttcatgaagaattgaattgcaccttt 663
|||| || |||||||| || ||||||||||| || | |||||||||
Sbjct: 1476 ccattgcattgtcatactccttcatgaagaactggactgcaccttt 1431
Score = 50.1 bits (25), Expect = 9e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1081 catcttgaaatcagcacgaagttctcttcccctctccacagccttatcacagtccttgat 1140
||||||| |||||| | ||| ||||| ||||| || |||||||||||||| ||||||||
Sbjct: 1013 catcttgtaatcagacctaagctctctacccctttcaacagccttatcacaatccttgat 954
Query: 1141 gcattcatc 1149
|| |||||
Sbjct: 953 acactcatc 945
>gb|B11714.1|B11714 F6N12-Sp6 IGF Arabidopsis thaliana genomic clone F6N12, DNA
sequence
Length = 1224
Score = 77.8 bits (39), Expect = 4e-012
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 893 ggatcatagtactcttgttgctccaactcttttttcgctctctcagcctcattca 947
||||||||||||||||| |||||||||||||| || |||||||| ||||||||||
Sbjct: 187 ggatcatagtactcttgctgctccaactctttctttgctctctctgcctcattca 241
Score = 50.1 bits (25), Expect = 9e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1081 catcttgaaatcagcacgaagttctcttcccctctccacagccttatcacagtccttgat 1140
||||||| |||||| | ||| ||||| ||||| || |||||||||||||| ||||||||
Sbjct: 375 catcttgtaatcagacctaagctctctacccctttcaacagccttatcacaatccttgat 434
Query: 1141 gcattcatc 1149
|| |||||
Sbjct: 435 acactcatc 443
>emb|AL083313.1|CNS00OK3 Arabidopsis thaliana genome survey sequence SP6 end of BAC F6K10 of
IGF library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 535
Score = 77.8 bits (39), Expect = 4e-012
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 893 ggatcatagtactcttgttgctccaactcttttttcgctctctcagcctcattca 947
||||||||||||||||| |||||||||||||| || |||||||| ||||||||||
Sbjct: 80 ggatcatagtactcttgctgctccaactctttctttgctctctctgcctcattca 134
Score = 50.1 bits (25), Expect = 9e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1081 catcttgaaatcagcacgaagttctcttcccctctccacagccttatcacagtccttgat 1140
||||||| |||||| | ||| ||||| ||||| || |||||||||||||| ||||||||
Sbjct: 268 catcttgtaatcagacctaagctctctacccctttcaacagccttatcacaatccttgat 327
Query: 1141 gcattcatc 1149
|| |||||
Sbjct: 328 acactcatc 336
>gb|AQ957820.1|AQ957820 LERAR86TF LERA Arabidopsis thaliana genomic clone LERAR86, DNA
sequence
Length = 798
Score = 77.8 bits (39), Expect = 4e-012
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 893 ggatcatagtactcttgttgctccaactcttttttcgctctctcagcctcattca 947
||||||||||||||||| |||||||||||||| || |||||||| ||||||||||
Sbjct: 150 ggatcatagtactcttgctgctccaactctttctttgctctctctgcctcattca 204
Score = 50.1 bits (25), Expect = 9e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1081 catcttgaaatcagcacgaagttctcttcccctctccacagccttatcacagtccttgat 1140
||||||| |||||| | ||| ||||| ||||| || |||||||||||||| ||||||||
Sbjct: 338 catcttgtaatcagacctaagctctctacccctttcaacagccttatcacaatccttgat 397
Query: 1141 gcattcatc 1149
|| |||||
Sbjct: 398 acactcatc 406
>gb|AC007190.4|AC007190 Genomic sequence for Arabidopsis thaliana BAC F23N19 from chromosome I,
complete sequence
Length = 86801
Score = 77.8 bits (39), Expect = 4e-012
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 893 ggatcatagtactcttgttgctccaactcttttttcgctctctcagcctcattca 947
||||||||||||||||| |||||||||||||| || |||||||| ||||||||||
Sbjct: 45227 ggatcatagtactcttgctgctccaactctttctttgctctctctgcctcattca 45173
Score = 52.0 bits (26), Expect = 2e-004
Identities = 86/106 (81%)
Strand = Plus / Minus
Query: 558 taacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggttt 617
||||||||||||| ||||||||||| || || ||||| | || || ||| || ||||
Sbjct: 45756 taacaccatcaagaagttcctggttattaggatcatgttcgagacccttctggtacgttt 45697
Query: 618 ccatggccttgtcatattctttcatgaagaattgaattgcaccttt 663
|||| || |||||||| || ||||||||||| || | |||||||||
Sbjct: 45696 ccattgcattgtcatactccttcatgaagaactggactgcaccttt 45651
Score = 50.1 bits (25), Expect = 9e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcat 477
||||||||||| | ||| || || ||||||||||| || ||||||||||||||
Sbjct: 46088 acctgtctcattacaggatctgtgagaatgttctgaatttctgggtcttgcat 46036
Score = 50.1 bits (25), Expect = 9e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1081 catcttgaaatcagcacgaagttctcttcccctctccacagccttatcacagtccttgat 1140
||||||| |||||| | ||| ||||| ||||| || |||||||||||||| ||||||||
Sbjct: 45039 catcttgtaatcagacctaagctctctacccctttcaacagccttatcacaatccttgat 44980
Query: 1141 gcattcatc 1149
|| |||||
Sbjct: 44979 acactcatc 44971
>emb|BX815512.1|CNS0ABEK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS69ZC08 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1846
Score = 77.8 bits (39), Expect = 4e-012
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 893 ggatcatagtactcttgttgctccaactcttttttcgctctctcagcctcattca 947
||||||||||||||||| |||||||||||||| || |||||||| ||||||||||
Sbjct: 1184 ggatcatagtactcttgctgctccaactctttctttgctctctctgcctcattca 1130
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 404 ttctcctggaaatcatttagcacctgtctcatgatagggtcggtaagaatgttctggatc 463
|||||||||| |||| || ||||||||||| | ||| || || ||||||||||| ||
Sbjct: 1672 ttctcctggagatcagacagtacctgtctcattacaggatctgtgagaatgttctgaatt 1613
Query: 464 tctgggtcttgcat 477
||||||||||||||
Sbjct: 1612 tctgggtcttgcat 1599
Score = 52.0 bits (26), Expect = 2e-004
Identities = 86/106 (81%)
Strand = Plus / Minus
Query: 558 taacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggttt 617
||||||||||||| ||||||||||| || || ||||| | || || ||| || ||||
Sbjct: 1518 taacaccatcaagaagttcctggttattaggatcatgttcgagacccttctggtacgttt 1459
Query: 618 ccatggccttgtcatattctttcatgaagaattgaattgcaccttt 663
|||| || |||||||| || ||||||||||| || | |||||||||
Sbjct: 1458 ccattgcattgtcatactccttcatgaagaactggactgcaccttt 1413
Score = 50.1 bits (25), Expect = 9e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1081 catcttgaaatcagcacgaagttctcttcccctctccacagccttatcacagtccttgat 1140
||||||| |||||| | ||| ||||| ||||| || |||||||||||||| ||||||||
Sbjct: 996 catcttgtaatcagacctaagctctctacccctttcaacagccttatcacaatccttgat 937
Query: 1141 gcattcatc 1149
|| |||||
Sbjct: 936 acactcatc 928
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 77.8 bits (39), Expect = 4e-012
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 893 ggatcatagtactcttgttgctccaactcttttttcgctctctcagcctcattca 947
||||||||||||||||| |||||||||||||| || |||||||| ||||||||||
Sbjct: 7473575 ggatcatagtactcttgctgctccaactctttctttgctctctctgcctcattca 7473521
Score = 52.0 bits (26), Expect = 2e-004
Identities = 86/106 (81%)
Strand = Plus / Minus
Query: 558 taacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggttt 617
||||||||||||| ||||||||||| || || ||||| | || || ||| || ||||
Sbjct: 7474104 taacaccatcaagaagttcctggttattaggatcatgttcgagacccttctggtacgttt 7474045
Query: 618 ccatggccttgtcatattctttcatgaagaattgaattgcaccttt 663
|||| || |||||||| || ||||||||||| || | |||||||||
Sbjct: 7474044 ccattgcattgtcatactccttcatgaagaactggactgcaccttt 7473999
Score = 50.1 bits (25), Expect = 9e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcat 477
||||||||||| | ||| || || ||||||||||| || ||||||||||||||
Sbjct: 7474436 acctgtctcattacaggatctgtgagaatgttctgaatttctgggtcttgcat 7474384
Score = 50.1 bits (25), Expect = 9e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1081 catcttgaaatcagcacgaagttctcttcccctctccacagccttatcacagtccttgat 1140
||||||| |||||| | ||| ||||| ||||| || |||||||||||||| ||||||||
Sbjct: 7473387 catcttgtaatcagacctaagctctctacccctttcaacagccttatcacaatccttgat 7473328
Query: 1141 gcattcatc 1149
|| |||||
Sbjct: 7473327 acactcatc 7473319
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 77.8 bits (39), Expect = 4e-012
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 893 ggatcatagtactcttgttgctccaactcttttttcgctctctcagcctcattca 947
||||||||||||||||| |||||||||||||| || |||||||| ||||||||||
Sbjct: 23235924 ggatcatagtactcttgctgctccaactctttctttgctctctctgcctcattca 23235870
Score = 63.9 bits (32), Expect = 6e-008
Identities = 113/140 (80%)
Strand = Plus / Minus
Query: 614 gtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtac 673
|||||||| || ||||| || ||||| | ||||||||| | |||| |||| || ||||
Sbjct: 4173898 gtttccatcgcattgtcgtactctttgaggaagaattggactgcagcttttctgctgtat 4173839
Query: 674 cctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggc 733
||||||| |||||| || || || |||| |||||| |||||||| || || |||||||||
Sbjct: 4173838 cctttagagaaggttggatcgagctcaatacacttttctgcatcctttagtccttcaggc 4173779
Query: 734 atggctcctaacttggtgta 753
|| || |||| ||| |||||
Sbjct: 4173778 attgcacctagcttagtgta 4173759
Score = 52.0 bits (26), Expect = 2e-004
Identities = 86/106 (81%)
Strand = Plus / Minus
Query: 558 taacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggttt 617
||||||||||||| ||||||||||| || || ||||| | || || ||| || ||||
Sbjct: 23236453 taacaccatcaagaagttcctggttattaggatcatgttcgagacccttctggtacgttt 23236394
Query: 618 ccatggccttgtcatattctttcatgaagaattgaattgcaccttt 663
|||| || |||||||| || ||||||||||| || | |||||||||
Sbjct: 23236393 ccattgcattgtcatactccttcatgaagaactggactgcaccttt 23236348
Score = 50.1 bits (25), Expect = 9e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcat 477
||||||||||| | ||| || || ||||||||||| || ||||||||||||||
Sbjct: 23236785 acctgtctcattacaggatctgtgagaatgttctgaatttctgggtcttgcat 23236733
Score = 50.1 bits (25), Expect = 9e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1081 catcttgaaatcagcacgaagttctcttcccctctccacagccttatcacagtccttgat 1140
||||||| |||||| | ||| ||||| ||||| || |||||||||||||| ||||||||
Sbjct: 23235736 catcttgtaatcagacctaagctctctacccctttcaacagccttatcacaatccttgat 23235677
Query: 1141 gcattcatc 1149
|| |||||
Sbjct: 23235676 acactcatc 23235668
Score = 50.1 bits (25), Expect = 9e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcat 477
||||||||||| | ||| || || || ||||||||||| ||||||||||||||
Sbjct: 4174270 acctgtctcattacaggatctgtgaggatgttctggatttctgggtcttgcat 4174218
>gb|T20791.1|T20791 2799 Lambda-PRL2 Arabidopsis thaliana cDNA clone 92N23T7, mRNA
sequence
Length = 268
Score = 71.9 bits (36), Expect = 2e-010
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 893 ggatcatagtactcttgttgctccaactcttttttcgctctctcagcctcattca 947
|||| |||||||||||| |||||||||||||| || |||||||| ||||||||||
Sbjct: 109 ggatnatagtactcttgctgctccaactctttctttgctctctctgcctcattca 163
>gb|AY140001.1| Arabidopsis thaliana stress-induced protein sti1-like protein
(At4g12400) mRNA, complete cds
Length = 2066
Score = 71.9 bits (36), Expect = 2e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
|||||||| | ||||||||| ||||| || |||| ||||||||||| |||| |||||||
Sbjct: 1072 actagagcagatccttttctagtcagagctcttgctatcatcttgaagtcagaacgaagt 1013
Query: 1103 tctcttcccctctccacagccttatcacagtc 1134
||||| || || || |||||||| ||||||||
Sbjct: 1012 tctctgcctctttcaacagccttgtcacagtc 981
Score = 48.1 bits (24), Expect = 0.003
Identities = 102/128 (79%)
Strand = Plus / Minus
Query: 557 ctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtt 616
|||||||||||||| | |||||||| || || ||||| || || || | ||||| |||
Sbjct: 1558 ctaacaccatcaaggaactcctggttcttaggatcatgttttagcccttcttgatacgtt 1499
Query: 617 tccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtaccct 676
||||| || || || ||||| |||||||| |||||||| || ||||| || |||| |||
Sbjct: 1498 tccatagctttatcgtattccttcatgaaaaattgaatagctccttttctactgtatcct 1439
Query: 677 ttagtgaa 684
|| |||||
Sbjct: 1438 ttcgtgaa 1431
>dbj|BD248411.1| Gene participating in tolerance against environmental stress
Length = 2640
Score = 71.9 bits (36), Expect = 2e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
|||||||| | ||||||||| ||||| || |||| ||||||||||| |||| |||||||
Sbjct: 1548 actagagcagatccttttctagtcagagctcttgctatcatcttgaagtcagaacgaagt 1489
Query: 1103 tctcttcccctctccacagccttatcacagtc 1134
||||| || || || |||||||| ||||||||
Sbjct: 1488 tctctgcctctttcaacagccttgtcacagtc 1457
Score = 50.1 bits (25), Expect = 9e-004
Identities = 106/133 (79%)
Strand = Plus / Minus
Query: 552 acctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgat 611
|||| |||||||||||||| | |||||||| || || ||||| || || || | ||||
Sbjct: 2128 accttctaacaccatcaaggaactcctggttcttaggatcatgttttagcccttcttgat 2069
Query: 612 aggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgt 671
| |||||||| || || || ||||| |||||||| |||||||| || ||||| || |||
Sbjct: 2068 acgtttccatagctttatcgtattccttcatgaaaaattgaatagctccttttctactgt 2009
Query: 672 accctttagtgaa 684
| ||||| |||||
Sbjct: 2008 atcctttcgtgaa 1996
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 71.9 bits (36), Expect = 2e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
|||||||| | ||||||||| ||||| || |||| ||||||||||| |||| |||||||
Sbjct: 3252572 actagagcagatccttttctagtcagagctcttgctatcatcttgaagtcagaacgaagt 3252631
Query: 1103 tctcttcccctctccacagccttatcacagtc 1134
||||| || || || |||||||| ||||||||
Sbjct: 3252632 tctctgcctctttcaacagccttgtcacagtc 3252663
Score = 50.1 bits (25), Expect = 9e-004
Identities = 106/133 (79%)
Strand = Plus / Plus
Query: 552 acctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgat 611
|||| |||||||||||||| | |||||||| || || ||||| || || || | ||||
Sbjct: 3251992 accttctaacaccatcaaggaactcctggttcttaggatcatgttttagcccttcttgat 3252051
Query: 612 aggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgt 671
| |||||||| || || || ||||| |||||||| |||||||| || ||||| || |||
Sbjct: 3252052 acgtttccatagctttatcgtattccttcatgaaaaattgaatagctccttttctactgt 3252111
Query: 672 accctttagtgaa 684
| ||||| |||||
Sbjct: 3252112 atcctttcgtgaa 3252124
>emb|AL080318.1|ATT4C9 Arabidopsis thaliana DNA chromosome 4, BAC clone T4C9 (ESSA project)
Length = 85356
Score = 71.9 bits (36), Expect = 2e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
|||||||| | ||||||||| ||||| || |||| ||||||||||| |||| |||||||
Sbjct: 73933 actagagcagatccttttctagtcagagctcttgctatcatcttgaagtcagaacgaagt 73992
Query: 1103 tctcttcccctctccacagccttatcacagtc 1134
||||| || || || |||||||| ||||||||
Sbjct: 73993 tctctgcctctttcaacagccttgtcacagtc 74024
Score = 50.1 bits (25), Expect = 9e-004
Identities = 106/133 (79%)
Strand = Plus / Plus
Query: 552 acctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgat 611
|||| |||||||||||||| | |||||||| || || ||||| || || || | ||||
Sbjct: 73353 accttctaacaccatcaaggaactcctggttcttaggatcatgttttagcccttcttgat 73412
Query: 612 aggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgt 671
| |||||||| || || || ||||| |||||||| |||||||| || ||||| || |||
Sbjct: 73413 acgtttccatagctttatcgtattccttcatgaaaaattgaatagctccttttctactgt 73472
Query: 672 accctttagtgaa 684
| ||||| |||||
Sbjct: 73473 atcctttcgtgaa 73485
>emb|AL049730.2|ATT1P17 Arabidopsis thaliana DNA chromosome 4, BAC clone T1P17 (ESSA project)
Length = 137519
Score = 71.9 bits (36), Expect = 2e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
|||||||| | ||||||||| ||||| || |||| ||||||||||| |||| |||||||
Sbjct: 7431 actagagcagatccttttctagtcagagctcttgctatcatcttgaagtcagaacgaagt 7490
Query: 1103 tctcttcccctctccacagccttatcacagtc 1134
||||| || || || |||||||| ||||||||
Sbjct: 7491 tctctgcctctttcaacagccttgtcacagtc 7522
Score = 50.1 bits (25), Expect = 9e-004
Identities = 106/133 (79%)
Strand = Plus / Plus
Query: 552 acctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgat 611
|||| |||||||||||||| | |||||||| || || ||||| || || || | ||||
Sbjct: 6851 accttctaacaccatcaaggaactcctggttcttaggatcatgttttagcccttcttgat 6910
Query: 612 aggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgt 671
| |||||||| || || || ||||| |||||||| |||||||| || ||||| || |||
Sbjct: 6911 acgtttccatagctttatcgtattccttcatgaaaaattgaatagctccttttctactgt 6970
Query: 672 accctttagtgaa 684
| ||||| |||||
Sbjct: 6971 atcctttcgtgaa 6983
>emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34
Length = 196107
Score = 71.9 bits (36), Expect = 2e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
|||||||| | ||||||||| ||||| || |||| ||||||||||| |||| |||||||
Sbjct: 11962 actagagcagatccttttctagtcagagctcttgctatcatcttgaagtcagaacgaagt 12021
Query: 1103 tctcttcccctctccacagccttatcacagtc 1134
||||| || || || |||||||| ||||||||
Sbjct: 12022 tctctgcctctttcaacagccttgtcacagtc 12053
Score = 50.1 bits (25), Expect = 9e-004
Identities = 106/133 (79%)
Strand = Plus / Plus
Query: 552 acctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgat 611
|||| |||||||||||||| | |||||||| || || ||||| || || || | ||||
Sbjct: 11382 accttctaacaccatcaaggaactcctggttcttaggatcatgttttagcccttcttgat 11441
Query: 612 aggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgt 671
| |||||||| || || || ||||| |||||||| |||||||| || ||||| || |||
Sbjct: 11442 acgtttccatagctttatcgtattccttcatgaaaaattgaatagctccttttctactgt 11501
Query: 672 accctttagtgaa 684
| ||||| |||||
Sbjct: 11502 atcctttcgtgaa 11514
>ref|NM_117310.2| Arabidopsis thaliana unknown protein AT4G12400 transcript variant
AT4G12400.1 mRNA, complete cds
Length = 2064
Score = 71.9 bits (36), Expect = 2e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
|||||||| | ||||||||| ||||| || |||| ||||||||||| |||| |||||||
Sbjct: 1069 actagagcagatccttttctagtcagagctcttgctatcatcttgaagtcagaacgaagt 1010
Query: 1103 tctcttcccctctccacagccttatcacagtc 1134
||||| || || || |||||||| ||||||||
Sbjct: 1009 tctctgcctctttcaacagccttgtcacagtc 978
Score = 48.1 bits (24), Expect = 0.003
Identities = 102/128 (79%)
Strand = Plus / Minus
Query: 557 ctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtt 616
|||||||||||||| | |||||||| || || ||||| || || || | ||||| |||
Sbjct: 1555 ctaacaccatcaaggaactcctggttcttaggatcatgttttagcccttcttgatacgtt 1496
Query: 617 tccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtaccct 676
||||| || || || ||||| |||||||| |||||||| || ||||| || |||| |||
Sbjct: 1495 tccatagctttatcgtattccttcatgaaaaattgaatagctccttttctactgtatcct 1436
Query: 677 ttagtgaa 684
|| |||||
Sbjct: 1435 ttcgtgaa 1428
>ref|NM_001036543.1| Arabidopsis thaliana unknown protein AT4G12400 transcript variant
AT4G12400.2 mRNA, complete cds
Length = 2006
Score = 71.9 bits (36), Expect = 2e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
|||||||| | ||||||||| ||||| || |||| ||||||||||| |||| |||||||
Sbjct: 1069 actagagcagatccttttctagtcagagctcttgctatcatcttgaagtcagaacgaagt 1010
Query: 1103 tctcttcccctctccacagccttatcacagtc 1134
||||| || || || |||||||| ||||||||
Sbjct: 1009 tctctgcctctttcaacagccttgtcacagtc 978
Score = 48.1 bits (24), Expect = 0.003
Identities = 102/128 (79%)
Strand = Plus / Minus
Query: 557 ctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtt 616
|||||||||||||| | |||||||| || || ||||| || || || | ||||| |||
Sbjct: 1555 ctaacaccatcaaggaactcctggttcttaggatcatgttttagcccttcttgatacgtt 1496
Query: 617 tccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtaccct 676
||||| || || || ||||| |||||||| |||||||| || ||||| || |||| |||
Sbjct: 1495 tccatagctttatcgtattccttcatgaaaaattgaatagctccttttctactgtatcct 1436
Query: 677 ttagtgaa 684
|| |||||
Sbjct: 1435 ttcgtgaa 1428
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 71.9 bits (36), Expect = 2e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
|||||||| | ||||||||| ||||| || |||| ||||||||||| |||| |||||||
Sbjct: 7339833 actagagcagatccttttctagtcagagctcttgctatcatcttgaagtcagaacgaagt 7339892
Query: 1103 tctcttcccctctccacagccttatcacagtc 1134
||||| || || || |||||||| ||||||||
Sbjct: 7339893 tctctgcctctttcaacagccttgtcacagtc 7339924
Score = 50.1 bits (25), Expect = 9e-004
Identities = 106/133 (79%)
Strand = Plus / Plus
Query: 552 acctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgat 611
|||| |||||||||||||| | |||||||| || || ||||| || || || | ||||
Sbjct: 7339253 accttctaacaccatcaaggaactcctggttcttaggatcatgttttagcccttcttgat 7339312
Query: 612 aggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgt 671
| |||||||| || || || ||||| |||||||| |||||||| || ||||| || |||
Sbjct: 7339313 acgtttccatagctttatcgtattccttcatgaaaaattgaatagctccttttctactgt 7339372
Query: 672 accctttagtgaa 684
| ||||| |||||
Sbjct: 7339373 atcctttcgtgaa 7339385
>gb|AQ958237.1|AQ958237 LERAW27TR LERA Arabidopsis thaliana genomic clone LERAW27, DNA
sequence
Length = 475
Score = 63.9 bits (32), Expect = 6e-008
Identities = 113/140 (80%)
Strand = Plus / Plus
Query: 614 gtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtac 673
|||||||| || ||||| || ||||| | ||||||||| | |||| |||| || ||||
Sbjct: 107 gtttccatcgcattgtcgtactctttgaggaagaattggactgcagcttttctgctgtat 166
Query: 674 cctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggc 733
||||||| |||||| || || || |||| |||||| |||||||| || || |||||||||
Sbjct: 167 cctttagagaaggttggatcgagctcaatacacttttctgcatcctttagtccttcaggc 226
Query: 734 atggctcctaacttggtgta 753
|| || |||| ||| |||||
Sbjct: 227 attgcacctagcttagtgta 246
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 63.9 bits (32), Expect = 6e-008
Identities = 113/140 (80%)
Strand = Plus / Minus
Query: 614 gtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtac 673
|||||||| || ||||| || ||||| | ||||||||| | |||| |||| || ||||
Sbjct: 4173722 gtttccatcgcattgtcgtactctttgaggaagaattggactgcagcttttctgctgtat 4173663
Query: 674 cctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggc 733
||||||| |||||| || || || |||| |||||| |||||||| || || |||||||||
Sbjct: 4173662 cctttagagaaggttggatcgagctcaatacacttttctgcatcctttagtccttcaggc 4173603
Query: 734 atggctcctaacttggtgta 753
|| || |||| ||| |||||
Sbjct: 4173602 attgcacctagcttagtgta 4173583
Score = 50.1 bits (25), Expect = 9e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcat 477
||||||||||| | ||| || || || ||||||||||| ||||||||||||||
Sbjct: 4174094 acctgtctcattacaggatctgtgaggatgttctggatttctgggtcttgcat 4174042
>gb|AY064967.1| Arabidopsis thaliana At1g12270/F5O11_1 mRNA, complete cds
Length = 1943
Score = 63.9 bits (32), Expect = 6e-008
Identities = 113/140 (80%)
Strand = Plus / Minus
Query: 614 gtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtac 673
|||||||| || ||||| || ||||| | ||||||||| | |||| |||| || ||||
Sbjct: 1448 gtttccatcgcattgtcgtactctttgaggaagaattggactgcagcttttctgctgtat 1389
Query: 674 cctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggc 733
||||||| |||||| || || || |||| |||||| |||||||| || || |||||||||
Sbjct: 1388 cctttagagaaggttggatcgagctcaatacacttttctgcatcctttagtccttcaggc 1329
Query: 734 atggctcctaacttggtgta 753
|| || |||| ||| |||||
Sbjct: 1328 attgcacctagcttagtgta 1309
Score = 50.1 bits (25), Expect = 9e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcat 477
||||||||||| | ||| || || || ||||||||||| ||||||||||||||
Sbjct: 1637 acctgtctcattacaggatctgtgaggatgttctggatttctgggtcttgcat 1585
>gb|BT000651.1| Arabidopsis thaliana At1g12270/F5O11_1 mRNA, complete cds
Length = 1719
Score = 63.9 bits (32), Expect = 6e-008
Identities = 113/140 (80%)
Strand = Plus / Minus
Query: 614 gtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtac 673
|||||||| || ||||| || ||||| | ||||||||| | |||| |||| || ||||
Sbjct: 1418 gtttccatcgcattgtcgtactctttgaggaagaattggactgcagcttttctgctgtat 1359
Query: 674 cctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggc 733
||||||| |||||| || || || |||| |||||| |||||||| || || |||||||||
Sbjct: 1358 cctttagagaaggttggatcgagctcaatacacttttctgcatcctttagtccttcaggc 1299
Query: 734 atggctcctaacttggtgta 753
|| || |||| ||| |||||
Sbjct: 1298 attgcacctagcttagtgta 1279
Score = 50.1 bits (25), Expect = 9e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcat 477
||||||||||| | ||| || || || ||||||||||| ||||||||||||||
Sbjct: 1607 acctgtctcattacaggatctgtgaggatgttctggatttctgggtcttgcat 1555
>gb|AC025416.4|AC025416 Genomic sequence for Arabidopsis thaliana BAC F5O11 from chromosome
I, complete sequence
Length = 118374
Score = 63.9 bits (32), Expect = 6e-008
Identities = 113/140 (80%)
Strand = Plus / Minus
Query: 614 gtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtac 673
|||||||| || ||||| || ||||| | ||||||||| | |||| |||| || ||||
Sbjct: 3225 gtttccatcgcattgtcgtactctttgaggaagaattggactgcagcttttctgctgtat 3166
Query: 674 cctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggc 733
||||||| |||||| || || || |||| |||||| |||||||| || || |||||||||
Sbjct: 3165 cctttagagaaggttggatcgagctcaatacacttttctgcatcctttagtccttcaggc 3106
Query: 734 atggctcctaacttggtgta 753
|| || |||| ||| |||||
Sbjct: 3105 attgcacctagcttagtgta 3086
Score = 50.1 bits (25), Expect = 9e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcat 477
||||||||||| | ||| || || || ||||||||||| ||||||||||||||
Sbjct: 3597 acctgtctcattacaggatctgtgaggatgttctggatttctgggtcttgcat 3545
>emb|AJ319538.1|ATH319538 Arabidopsis thaliana partial mRNA for stil-like (stil gene)
Length = 720
Score = 63.9 bits (32), Expect = 6e-008
Identities = 113/140 (80%)
Strand = Plus / Minus
Query: 614 gtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtac 673
|||||||| || ||||| || ||||| | ||||||||| | |||| |||| || ||||
Sbjct: 198 gtttccatcgcgttgtcgtactctttgaggaagaattggactgcagcttttctgctgtat 139
Query: 674 cctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggc 733
||||||| |||||| || || || |||| |||||| |||||||| || || |||||||||
Sbjct: 138 cctttagagaaggttggatcgagctcaatacacttttctgcatcctttagtccttcaggc 79
Query: 734 atggctcctaacttggtgta 753
|| || |||| ||| |||||
Sbjct: 78 attgcacctagcttagtgta 59
Score = 50.1 bits (25), Expect = 9e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcat 477
||||||||||| | ||| || || || ||||||||||| ||||||||||||||
Sbjct: 387 acctgtctcattacaggatctgtgaggatgttctggatttctgggtcttgcat 335
>ref|NM_101099.4| Arabidopsis thaliana unknown protein AT1G12270 mRNA, complete cds
Length = 1949
Score = 63.9 bits (32), Expect = 6e-008
Identities = 113/140 (80%)
Strand = Plus / Minus
Query: 614 gtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtac 673
|||||||| || ||||| || ||||| | ||||||||| | |||| |||| || ||||
Sbjct: 1448 gtttccatcgcattgtcgtactctttgaggaagaattggactgcagcttttctgctgtat 1389
Query: 674 cctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggc 733
||||||| |||||| || || || |||| |||||| |||||||| || || |||||||||
Sbjct: 1388 cctttagagaaggttggatcgagctcaatacacttttctgcatcctttagtccttcaggc 1329
Query: 734 atggctcctaacttggtgta 753
|| || |||| ||| |||||
Sbjct: 1328 attgcacctagcttagtgta 1309
Score = 50.1 bits (25), Expect = 9e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcat 477
||||||||||| | ||| || || || ||||||||||| ||||||||||||||
Sbjct: 1637 acctgtctcattacaggatctgtgaggatgttctggatttctgggtcttgcat 1585
>emb|BX288806.1| Arabidopsis thaliana T-DNA flanking sequence GK-420A10-018140,
genomic survey sequence
Length = 162
Score = 60.0 bits (30), Expect = 9e-007
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 614 gtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtac 673
|||||||| || ||||| || ||||| | ||||||||| | |||| |||| || ||||
Sbjct: 13 gtttccatcgcattgtcgtactctttgaggaagaattggactgcagcttttctgctgtat 72
Query: 674 cctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggc 733
||||||| |||||| || || || |||| |||||| |||||||| || || |||||||||
Sbjct: 73 cctttagagaaggttggatcgagctcaatacacttttctgcatcctttagtccttcaggc 132
Query: 734 at 735
||
Sbjct: 133 at 134
>emb|AJ834186.1| Arabidopsis thaliana T-DNA flanking sequence, left border, clone
013C07
Length = 381
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
|||||||| | ||||||||| ||||| || |||| ||||||||||| |||| |||||||
Sbjct: 99 actagagcagatccttttctagtcagagctcttgctatcatcttgaagtcagaacgaagt 40
Query: 1103 tctc 1106
||||
Sbjct: 39 tctc 36
>emb|AJ834247.1| Arabidopsis thaliana T-DNA flanking sequence, left border, clone
015B01
Length = 381
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
|||||||| | ||||||||| ||||| || |||| ||||||||||| |||| |||||||
Sbjct: 99 actagagcagatccttttctagtcagagctcttgctatcatcttgaagtcagaacgaagt 40
Query: 1103 tctc 1106
||||
Sbjct: 39 tctc 36
>emb|AJ834558.1| Arabidopsis thaliana T-DNA flanking sequence, left border, clone
036E11
Length = 381
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
|||||||| | ||||||||| ||||| || |||| ||||||||||| |||| |||||||
Sbjct: 99 actagagcagatccttttctagtcagagctcttgctatcatcttgaagtcagaacgaagt 40
Query: 1103 tctc 1106
||||
Sbjct: 39 tctc 36
>gb|AA040981.1|AA040981 24247 CD4-13 Arabidopsis thaliana cDNA clone E10E7T7, mRNA sequence
Length = 566
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 404 ttctcctggaaatcatttagcacctgtctcatgatagggtcggtaagaatgttctggatc 463
|||||||||| |||| || ||||||||||| | ||| || || ||||||||||| ||
Sbjct: 179 ttctcctggagatcagacagtacctgtctcattacaggatctgtgagaatgttctgaatt 238
Query: 464 tctgggtcttgcat 477
||||||||||||||
Sbjct: 239 tctgggtcttgcat 252
>gb|AV536410.1|AV536410 AV536410 Arabidopsis thaliana liquid-cultured seedlings Columbia
Arabidopsis thaliana cDNA clone pAZNII1064F 3', mRNA
sequence
Length = 609
Score = 52.0 bits (26), Expect = 2e-004
Identities = 86/106 (81%)
Strand = Plus / Plus
Query: 558 taacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggttt 617
||||||||||||| ||||||||||| || || ||||| | || || ||| || ||||
Sbjct: 368 taacaccatcaagaagttcctggttattaggatcatgttcgagacccttctggtacgttt 427
Query: 618 ccatggccttgtcatattctttcatgaagaattgaattgcaccttt 663
|||| || |||||||| || ||||||||||| || | |||||||||
Sbjct: 428 ccattgcattgtcatactccttcatgaagaactggactgcaccttt 473
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 404 ttctcctggaaatcatttagcacctgtctcatgatagggtcggtaagaatgttctggatc 463
|||||||||| |||| || ||||||||||| | ||| || || ||||||||||| ||
Sbjct: 214 ttctcctggagatcagacagtacctgtctcattacaggatctgtgagaatgttctgaatt 273
Query: 464 tctgggtcttgcat 477
||||||||||||||
Sbjct: 274 tctgggtcttgcat 287
>gb|AV537240.1|AV537240 AV537240 Arabidopsis thaliana liquid-cultured seedlings Columbia
Arabidopsis thaliana cDNA clone pAZNII1064R 5', mRNA
sequence
Length = 513
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 404 ttctcctggaaatcatttagcacctgtctcatgatagggtcggtaagaatgttctggatc 463
|||||||||| |||| || ||||||||||| | ||| || || ||||||||||| ||
Sbjct: 446 ttctcctggagatcagacagtacctgtctcattacaggatctgtgagaatgttctgaatt 387
Query: 464 tctgggtcttgcat 477
||||||||||||||
Sbjct: 386 tctgggtcttgcat 373
Score = 52.0 bits (26), Expect = 2e-004
Identities = 86/106 (81%)
Strand = Plus / Minus
Query: 558 taacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggttt 617
||||||||||||| ||||||||||| || || ||||| | || || ||| || ||||
Sbjct: 292 taacaccatcaagaagttcctggttattaggatcatgttcgagacccttctggtacgttt 233
Query: 618 ccatggccttgtcatattctttcatgaagaattgaattgcaccttt 663
|||| || |||||||| || ||||||||||| || | |||||||||
Sbjct: 232 ccattgcattgtcatactccttcatgaagaactggactgcaccttt 187
>gb|AV544844.1|AV544844 AV544844 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ61b01F 3', mRNA sequence
Length = 643
Score = 52.0 bits (26), Expect = 2e-004
Identities = 86/106 (81%)
Strand = Plus / Plus
Query: 558 taacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggttt 617
||||||||||||| ||||||||||| || || ||||| | || || ||| || ||||
Sbjct: 339 taacaccatcaagaagttcctggttattaggatcatgttcgagacccttctggtacgttt 398
Query: 618 ccatggccttgtcatattctttcatgaagaattgaattgcaccttt 663
|||| || |||||||| || ||||||||||| || | |||||||||
Sbjct: 399 ccattgcattgtcatactccttcatgaagaactggactgcaccttt 444
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 404 ttctcctggaaatcatttagcacctgtctcatgatagggtcggtaagaatgttctggatc 463
|||||||||| |||| || ||||||||||| | ||| || || ||||||||||| ||
Sbjct: 185 ttctcctggagatcagacagtacctgtctcattacaggatctgtgagaatgttctgaatt 244
Query: 464 tctgggtcttgcat 477
||||||||||||||
Sbjct: 245 tctgggtcttgcat 258
>gb|AV562107.1|AV562107 AV562107 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ164a03F 3', mRNA sequence
Length = 465
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 404 ttctcctggaaatcatttagcacctgtctcatgatagggtcggtaagaatgttctggatc 463
|||||||||| |||| || ||||||||||| | ||| || || ||||||||||| ||
Sbjct: 214 ttctcctggagatcagacagtacctgtctcattacaggatctgtgagaatgttctgaatt 273
Query: 464 tctgggtcttgcat 477
||||||||||||||
Sbjct: 274 tctgggtcttgcat 287
Score = 46.1 bits (23), Expect = 0.013
Identities = 74/91 (81%)
Strand = Plus / Plus
Query: 558 taacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggttt 617
||||||||||||| ||||||||||| || || ||||| | || || ||| || ||||
Sbjct: 368 taacaccatcaagaagttcctggttattaggatcatgttcgagacccttctggtacgttt 427
Query: 618 ccatggccttgtcatattctttcatgaagaa 648
|||| || |||||||| || |||||||||||
Sbjct: 428 ccattgcattgtcatactccttcatgaagaa 458
>gb|BP654313.1|BP654313 BP654313 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-17-C20 3',
mRNA sequence
Length = 377
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 404 ttctcctggaaatcatttagcacctgtctcatgatagggtcggtaagaatgttctggatc 463
|||||||||| |||| || ||||||||||| | ||| || || ||||||||||| ||
Sbjct: 213 ttctcctggagatcagacagtacctgtctcattacaggatctgtgagaatgttctgaatt 272
Query: 464 tctgggtcttgcat 477
||||||||||||||
Sbjct: 273 tctgggtcttgcat 286
>gb|BH169340.1|BH169340 SALK_001113 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_001113, DNA sequence
Length = 469
Score = 50.1 bits (25), Expect = 9e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcat 477
||||||||||| | ||| || || ||||||||||| || ||||||||||||||
Sbjct: 118 acctgtctcattacaggatctgtgagaatgttctgaatttctgggtcttgcat 66
>gb|AV802721.1|AV802721 AV802721 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-32-P19 3',
mRNA sequence
Length = 398
Score = 50.1 bits (25), Expect = 9e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcat 477
||||||||||| | ||| || || || ||||||||||| ||||||||||||||
Sbjct: 307 acctgtctcattacaggatctgtgaggatgttctggatttctgggtcttgcat 359
>gb|AV562691.1|AV562691 AV562691 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ174d01F 3', mRNA sequence
Length = 553
Score = 50.1 bits (25), Expect = 9e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcat 477
||||||||||| | ||| || || || ||||||||||| ||||||||||||||
Sbjct: 275 acctgtctcattacaggatctgtgaggatgttctggatttctgggtcttgcat 327
>gb|AV565803.1|AV565803 AV565803 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ231a11F 3', mRNA sequence
Length = 452
Score = 50.1 bits (25), Expect = 9e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcat 477
||||||||||| | ||| || || || ||||||||||| ||||||||||||||
Sbjct: 264 acctgtctcattacaggatctgtgaggatgttctggatttctgggtcttgcat 316
>gb|BP632289.1|BP632289 BP632289 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-26-I19 3',
mRNA sequence
Length = 364
Score = 46.1 bits (23), Expect = 0.013
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 427 ctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcat 477
||||||||| | ||| || || ||||||||||| || ||||||||||||||
Sbjct: 236 ctgtctcattacaggatctgtgagaatgttctgaatttctgggtcttgcat 286
>gb|AV555790.1|AV555790 AV555790 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ025f10F 3', mRNA sequence
Length = 469
Score = 44.1 bits (22), Expect = 0.053
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 452 atgttctggatctctgggtcttgcat 477
||||||||||| ||||||||||||||
Sbjct: 323 atgttctggatttctgggtcttgcat 348
>gb|AV564598.1|AV564598 AV564598 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ207b04F 3', mRNA sequence
Length = 414
Score = 44.1 bits (22), Expect = 0.053
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 452 atgttctggatctctgggtcttgcat 477
||||||||||| ||||||||||||||
Sbjct: 291 atgttctggatttctgggtcttgcat 316
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 697,823
Number of Sequences: 1013581
Number of extensions: 697823
Number of successful extensions: 59327
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56987
Number of HSP's gapped (non-prelim): 2335
length of query: 1151
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1131
effective length of database: 888,669,252
effective search space: 1005084924012
effective search space used: 1005084924012
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)