BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404820.2.1
(830 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV535768.1|AV535768 AV535768 Arabidopsis thaliana flower... 74 4e-011
gb|AC006223.4| Arabidopsis thaliana chromosome 2 clone F22D... 74 4e-011
dbj|AK117353.1| Arabidopsis thaliana At2g31960 mRNA for put... 74 4e-011
ref|NM_179847.1| Arabidopsis thaliana ATGSL03 (GLUCAN SYNTH... 74 4e-011
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 74 4e-011
emb|AX651854.1| Sequence 720 from Patent WO03000898 66 1e-008
ref|NM_121303.3| Arabidopsis thaliana ATGSL12 (GLUCAN SYNTH... 66 1e-008
gb|CW796846.1|CW796846 WiscDsLox468C6 Arabidopsis thaliana ... 60 6e-007
gb|AQ959100.1|AQ959100 LEREH30TF LERE Arabidopsis thaliana ... 58 3e-006
gb|AQ959101.1|AQ959101 LEREH30TFB LERE Arabidopsis thaliana... 58 3e-006
gb|AQ959103.1|AQ959103 LEREH30TRB LERE Arabidopsis thaliana... 58 3e-006
gb|AI996136.1|AI996136 701550178 A. thaliana, Columbia Col-... 58 3e-006
gb|AV546514.1|AV546514 AV546514 Arabidopsis thaliana roots ... 58 3e-006
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 58 3e-006
gb|AF237733.1|AF237733 Arabidopsis thaliana callose synthas... 58 3e-006
emb|AX412747.1| Sequence 511 from Patent WO0222675 58 3e-006
emb|AX441264.1| Sequence 18 from Patent EP1209228 58 3e-006
emb|AX508002.1| Sequence 2697 from Patent WO0216655 58 3e-006
dbj|BD181338.1| A stress-responsive promoter 58 3e-006
emb|BX572740.1| Arabidopsis thaliana transposon insertion S... 58 3e-006
gb|AC007153.2| Arabidopsis thaliana chromosome I BAC F3F20 ... 58 3e-006
gb|AC005106.2|AC005106 Genomic sequence for Arabidopsis tha... 58 3e-006
emb|BX819158.1|CNS0A8YL Arabidopsis thaliana Full-length cD... 58 3e-006
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 58 3e-006
emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome... 58 3e-006
ref|NM_100436.2| Arabidopsis thaliana CALS1 (CALLOSE SYNTHA... 58 3e-006
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 58 3e-006
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 58 3e-006
gb|AV546456.1|AV546456 AV546456 Arabidopsis thaliana roots ... 56 1e-005
gb|AU228526.1|AU228526 AU228526 RAFL16 Arabidopsis thaliana... 54 4e-005
emb|BX572386.1| Arabidopsis thaliana T-DNA flanking sequenc... 50 6e-004
gb|AQ959102.1|AQ959102 LEREH30TR LERE Arabidopsis thaliana ... 48 0.002
gb|BH810820.1|BH810820 SALK_051242 Arabidopsis thaliana TDN... 48 0.002
gb|AV534683.1|AV534683 AV534683 Arabidopsis thaliana flower... 48 0.002
gb|BX836766.1|BX836766 BX836766 Arabidopsis thaliana Flower... 46 0.010
>gb|AV535768.1|AV535768 AV535768 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB101h07F 3', mRNA sequence
Length = 533
Score = 73.8 bits (37), Expect = 4e-011
Identities = 112/137 (81%)
Strand = Plus / Plus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| |||||||||| ||||| || || || ||||| || ||||| |||| ||| |||
Sbjct: 167 atacgtgaaatctgcaatcctctgctaaatgcttggttaaagagcattcttgtctgaaac 226
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatg 278
|| || || |||||||||||||| ||||| || | ||| |||||||| || || ||||||
Sbjct: 227 tcagacacgaacgggaaccaagccaggaacgctaccggagtgaacaaaagtaaacccatg 286
Query: 279 atgatctcatagcctcg 295
| ||||||||||||||
Sbjct: 287 agaatctcatagcctcg 303
>gb|AC006223.4| Arabidopsis thaliana chromosome 2 clone F22D22 map TEn5, complete
sequence
Length = 103194
Score = 73.8 bits (37), Expect = 4e-011
Identities = 112/137 (81%)
Strand = Plus / Plus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| |||||||||| ||||| || || || ||||| || ||||| |||| ||| |||
Sbjct: 89390 atacgtgaaatctgcaatcctctgctaaatgcttggttaaagagcattcttgtctgaaac 89449
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatg 278
|| || || |||||||||||||| ||||| || | ||| |||||||| || || ||||||
Sbjct: 89450 tcagacacgaacgggaaccaagccaggaacgctaccggagtgaacaaaagtaaacccatg 89509
Query: 279 atgatctcatagcctcg 295
| ||||||||||||||
Sbjct: 89510 agaatctcatagcctcg 89526
>dbj|AK117353.1| Arabidopsis thaliana At2g31960 mRNA for putative glucan synthase,
complete cds, clone: RAFL16-92-B13
Length = 2390
Score = 73.8 bits (37), Expect = 4e-011
Identities = 112/137 (81%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| |||||||||| ||||| || || || ||||| || ||||| |||| ||| |||
Sbjct: 2224 atacgtgaaatctgcaatcctctgctaaatgcttggttaaagagcattcttgtctgaaac 2165
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatg 278
|| || || |||||||||||||| ||||| || | ||| |||||||| || || ||||||
Sbjct: 2164 tcagacacgaacgggaaccaagccaggaacgctaccggagtgaacaaaagtaaacccatg 2105
Query: 279 atgatctcatagcctcg 295
| ||||||||||||||
Sbjct: 2104 agaatctcatagcctcg 2088
>ref|NM_179847.1| Arabidopsis thaliana ATGSL03 (GLUCAN SYNTHASE-LIKE 3);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT2G31960 (ATGSL03) mRNA, complete cds
Length = 5880
Score = 73.8 bits (37), Expect = 4e-011
Identities = 112/137 (81%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| |||||||||| ||||| || || || ||||| || ||||| |||| ||| |||
Sbjct: 5834 atacgtgaaatctgcaatcctctgctaaatgcttggttaaagagcattcttgtctgaaac 5775
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatg 278
|| || || |||||||||||||| ||||| || | ||| |||||||| || || ||||||
Sbjct: 5774 tcagacacgaacgggaaccaagccaggaacgctaccggagtgaacaaaagtaaacccatg 5715
Query: 279 atgatctcatagcctcg 295
| ||||||||||||||
Sbjct: 5714 agaatctcatagcctcg 5698
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 73.8 bits (37), Expect = 4e-011
Identities = 112/137 (81%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| |||||||||| ||||| || || || ||||| || ||||| |||| ||| |||
Sbjct: 13607097 atacgtgaaatctgcaatcctctgctaaatgcttggttaaagagcattcttgtctgaaac 13607038
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatg 278
|| || || |||||||||||||| ||||| || | ||| |||||||| || || ||||||
Sbjct: 13607037 tcagacacgaacgggaaccaagccaggaacgctaccggagtgaacaaaagtaaacccatg 13606978
Query: 279 atgatctcatagcctcg 295
| ||||||||||||||
Sbjct: 13606977 agaatctcatagcctcg 13606961
>emb|AX651854.1| Sequence 720 from Patent WO03000898
Length = 5892
Score = 65.9 bits (33), Expect = 1e-008
Identities = 83/97 (85%), Gaps = 2/97 (2%)
Strand = Plus / Minus
Query: 461 gataaacgttatgaatatcagccccttgatcagccggaacacaagctg-gaactctgcac 519
||||||||| ||||||||||||||||| |||| |||||||| ||||| ||||| || |
Sbjct: 5554 gataaacgtcatgaatatcagcccctttatcaaccggaacatcagctgaaaactc-gcgc 5496
Query: 520 tgaatttcctcctgccaactgatacagtcttcatcac 556
||||| ||| ||| ||||| || ||||||||||||||
Sbjct: 5495 tgaatctccgccttccaaccgaaacagtcttcatcac 5459
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 156 aggatacgagaaatctgcagacctctactgaa 187
||||||||||| ||||| ||||||||||||||
Sbjct: 5849 aggatacgagagatctgaagacctctactgaa 5818
>ref|NM_121303.3| Arabidopsis thaliana ATGSL12 (GLUCAN SYNTHASE-LIKE 12);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT5G13000 (ATGSL12) mRNA, complete cds
Length = 6194
Score = 65.9 bits (33), Expect = 1e-008
Identities = 83/97 (85%), Gaps = 2/97 (2%)
Strand = Plus / Minus
Query: 461 gataaacgttatgaatatcagccccttgatcagccggaacacaagctg-gaactctgcac 519
||||||||| ||||||||||||||||| |||| |||||||| ||||| ||||| || |
Sbjct: 5696 gataaacgtcatgaatatcagcccctttatcaaccggaacatcagctgaaaactc-gcgc 5638
Query: 520 tgaatttcctcctgccaactgatacagtcttcatcac 556
||||| ||| ||| ||||| || ||||||||||||||
Sbjct: 5637 tgaatctccgccttccaaccgaaacagtcttcatcac 5601
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 156 aggatacgagaaatctgcagacctctactgaa 187
||||||||||| ||||| ||||||||||||||
Sbjct: 6001 aggatacgagagatctgaagacctctactgaa 5970
>gb|CW796846.1|CW796846 WiscDsLox468C6 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 751
Score = 60.0 bits (30), Expect = 6e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 461 gataaacgttatgaatatcagccccttgatcagccggaaca 501
||||||||| ||||||||||||||||| |||| ||||||||
Sbjct: 472 gataaacgtcatgaatatcagcccctttatcanccggaaca 512
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 156 aggatacgagaaatctgcagacctctactgaa 187
||||||||||| ||||| ||||||||||||||
Sbjct: 68 aggatacgagagatctgaagacctctactgaa 99
>gb|AQ959100.1|AQ959100 LEREH30TF LERE Arabidopsis thaliana genomic clone LEREH30, DNA
sequence
Length = 573
Score = 58.0 bits (29), Expect = 3e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 461 gataaacgttatgaatatcagccccttgatcagccggaaca 501
||||||||| ||||||||||||||||| |||| ||||||||
Sbjct: 314 gataaacgtcatgaatatcagcccctttatcaaccggaaca 274
>gb|AQ959101.1|AQ959101 LEREH30TFB LERE Arabidopsis thaliana genomic clone LEREH30, DNA
sequence
Length = 711
Score = 58.0 bits (29), Expect = 3e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 461 gataaacgttatgaatatcagccccttgatcagccggaaca 501
||||||||| ||||||||||||||||| |||| ||||||||
Sbjct: 328 gataaacgtcatgaatatcagcccctttatcaaccggaaca 288
>gb|AQ959103.1|AQ959103 LEREH30TRB LERE Arabidopsis thaliana genomic clone LEREH30, DNA
sequence
Length = 538
Score = 58.0 bits (29), Expect = 3e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 461 gataaacgttatgaatatcagccccttgatcagccggaaca 501
||||||||| ||||||||||||||||| |||| ||||||||
Sbjct: 441 gataaacgtcatgaatatcagcccctttatcaaccggaaca 481
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 156 aggatacgagaaatctgcagacctctactgaa 187
||||||||||| ||||| ||||||||||||||
Sbjct: 37 aggatacgagagatctgaagacctctactgaa 68
>gb|AI996136.1|AI996136 701550178 A. thaliana, Columbia Col-0, inflorescence-2 Arabidopsis
thaliana cDNA clone 701550178, mRNA sequence
Length = 626
Score = 58.0 bits (29), Expect = 3e-006
Identities = 110/137 (80%)
Strand = Plus / Plus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
|||||||| || || ||||||||||| ||||| ||||| || ||||| |||| |||||||
Sbjct: 221 atacgagagatttgtagacctctactaaaggcttggttaaagagcattcttgtctggaac 280
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatg 278
|| || ||||| || ||||| || | || || | || ||||||| |||||||||||
Sbjct: 281 tcagacacaaaaggaaaccaggccaaaaacgcaactggtgtgaacagaagcaagcccatc 340
Query: 279 atgatctcatagcctcg 295
| |||||| ||||||||
Sbjct: 341 acgatctcgtagcctcg 357
>gb|AV546514.1|AV546514 AV546514 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL15c03F 3', mRNA sequence
Length = 544
Score = 58.0 bits (29), Expect = 3e-006
Identities = 110/137 (80%)
Strand = Plus / Plus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
|||||||| || || ||||||||||| ||||| ||||| || ||||| |||| |||||||
Sbjct: 174 atacgagagatttgtagacctctactaaaggcttggttaaagagcattcttgtctggaac 233
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatg 278
|| || ||||| || ||||| || | || || | || ||||||| |||||||||||
Sbjct: 234 tcagacacaaaaggaaaccaggccaaaaacgcaactggtgtgaacagaagcaagcccatc 293
Query: 279 atgatctcatagcctcg 295
| |||||| ||||||||
Sbjct: 294 acgatctcgtagcctcg 310
Score = 54.0 bits (27), Expect = 4e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 353 ttgtgctatcagaagcaaaccccatccagttggcatgaacgcaaggatgca 403
|||||| || ||||||| |||||||||||||||||||| ||||| |||||
Sbjct: 368 ttgtgcaatgagaagcattccccatccagttggcatgaaggcaagcatgca 418
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 58.0 bits (29), Expect = 3e-006
Identities = 110/137 (80%)
Strand = Plus / Plus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
|||||||| || || ||||||||||| ||||| ||||| || ||||| |||| |||||||
Sbjct: 1647802 atacgagagatttgtagacctctactaaaggcttggttaaagagcattcttgtctggaac 1647861
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatg 278
|| || ||||| || ||||| || | || || | || ||||||| |||||||||||
Sbjct: 1647862 tcagacacaaaaggaaaccaggccaaaaacgcaactggtgtgaacagaagcaagcccatc 1647921
Query: 279 atgatctcatagcctcg 295
| |||||| ||||||||
Sbjct: 1647922 acgatctcgtagcctcg 1647938
Score = 50.1 bits (25), Expect = 6e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 363 agaagcaaaccccatccagttggcatgaacgcaaggatgca 403
||||||| |||||||||||||||||||| ||||| |||||
Sbjct: 1648104 agaagcattccccatccagttggcatgaaggcaagcatgca 1648144
>gb|AF237733.1|AF237733 Arabidopsis thaliana callose synthase 1 catalytic subunit (CalS1)
mRNA, complete cds
Length = 6007
Score = 58.0 bits (29), Expect = 3e-006
Identities = 110/137 (80%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
|||||||| || || ||||||||||| ||||| ||||| || ||||| |||| |||||||
Sbjct: 5816 atacgagagatttgtagacctctactaaaggcttggttaaagagcattcttgtctggaac 5757
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatg 278
|| || ||||| || ||||| || | || || | || ||||||| |||||||||||
Sbjct: 5756 tcagacacaaaaggaaaccaggccaaaaacgcaactggtgtgaacagaagcaagcccatc 5697
Query: 279 atgatctcatagcctcg 295
| |||||| ||||||||
Sbjct: 5696 acgatctcgtagcctcg 5680
Score = 54.0 bits (27), Expect = 4e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 353 ttgtgctatcagaagcaaaccccatccagttggcatgaacgcaaggatgca 403
|||||| || ||||||| |||||||||||||||||||| ||||| |||||
Sbjct: 5622 ttgtgcaatgagaagcattccccatccagttggcatgaaggcaagcatgca 5572
>emb|AX412747.1| Sequence 511 from Patent WO0222675
Length = 5577
Score = 58.0 bits (29), Expect = 3e-006
Identities = 110/137 (80%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
|||||||| || || ||||||||||| ||||| ||||| || ||||| |||| |||||||
Sbjct: 5531 atacgagagatttgtagacctctactaaaggcttggttaaagagcattcttgtctggaac 5472
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatg 278
|| || ||||| || ||||| || | || || | || ||||||| |||||||||||
Sbjct: 5471 tcagacacaaaaggaaaccaggccaaaaacgcaactggtgtgaacagaagcaagcccatc 5412
Query: 279 atgatctcatagcctcg 295
| |||||| ||||||||
Sbjct: 5411 acgatctcgtagcctcg 5395
Score = 54.0 bits (27), Expect = 4e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 353 ttgtgctatcagaagcaaaccccatccagttggcatgaacgcaaggatgca 403
|||||| || ||||||| |||||||||||||||||||| ||||| |||||
Sbjct: 5337 ttgtgcaatgagaagcattccccatccagttggcatgaaggcaagcatgca 5287
>emb|AX441264.1| Sequence 18 from Patent EP1209228
Length = 2000
Score = 58.0 bits (29), Expect = 3e-006
Identities = 110/137 (80%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
|||||||| || || ||||||||||| ||||| ||||| || ||||| |||| |||||||
Sbjct: 1308 atacgagagatttgtagacctctactaaaggcttggttaaagagcattcttgtctggaac 1249
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatg 278
|| || ||||| || ||||| || | || || | || ||||||| |||||||||||
Sbjct: 1248 tcagacacaaaaggaaaccaggccaaaaacgcaactggtgtgaacagaagcaagcccatc 1189
Query: 279 atgatctcatagcctcg 295
| |||||| ||||||||
Sbjct: 1188 acgatctcgtagcctcg 1172
Score = 50.1 bits (25), Expect = 6e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 363 agaagcaaaccccatccagttggcatgaacgcaaggatgca 403
||||||| |||||||||||||||||||| ||||| |||||
Sbjct: 1006 agaagcattccccatccagttggcatgaaggcaagcatgca 966
>emb|AX508002.1| Sequence 2697 from Patent WO0216655
Length = 5577
Score = 58.0 bits (29), Expect = 3e-006
Identities = 110/137 (80%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
|||||||| || || ||||||||||| ||||| ||||| || ||||| |||| |||||||
Sbjct: 5531 atacgagagatttgtagacctctactaaaggcttggttaaagagcattcttgtctggaac 5472
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatg 278
|| || ||||| || ||||| || | || || | || ||||||| |||||||||||
Sbjct: 5471 tcagacacaaaaggaaaccaggccaaaaacgcaactggtgtgaacagaagcaagcccatc 5412
Query: 279 atgatctcatagcctcg 295
| |||||| ||||||||
Sbjct: 5411 acgatctcgtagcctcg 5395
Score = 54.0 bits (27), Expect = 4e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 353 ttgtgctatcagaagcaaaccccatccagttggcatgaacgcaaggatgca 403
|||||| || ||||||| |||||||||||||||||||| ||||| |||||
Sbjct: 5337 ttgtgcaatgagaagcattccccatccagttggcatgaaggcaagcatgca 5287
>dbj|BD181338.1| A stress-responsive promoter
Length = 2000
Score = 58.0 bits (29), Expect = 3e-006
Identities = 110/137 (80%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
|||||||| || || ||||||||||| ||||| ||||| || ||||| |||| |||||||
Sbjct: 1308 atacgagagatttgtagacctctactaaaggcttggttaaagagcattcttgtctggaac 1249
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatg 278
|| || ||||| || ||||| || | || || | || ||||||| |||||||||||
Sbjct: 1248 tcagacacaaaaggaaaccaggccaaaaacgcaactggtgtgaacagaagcaagcccatc 1189
Query: 279 atgatctcatagcctcg 295
| |||||| ||||||||
Sbjct: 1188 acgatctcgtagcctcg 1172
Score = 50.1 bits (25), Expect = 6e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 363 agaagcaaaccccatccagttggcatgaacgcaaggatgca 403
||||||| |||||||||||||||||||| ||||| |||||
Sbjct: 1006 agaagcattccccatccagttggcatgaaggcaagcatgca 966
>emb|BX572740.1| Arabidopsis thaliana transposon insertion STS GT_5.44702, sequence
tagged site
Length = 217
Score = 58.0 bits (29), Expect = 3e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 461 gataaacgttatgaatatcagccccttgatcagccggaaca 501
||||||||| ||||||||||||||||| |||| ||||||||
Sbjct: 127 gataaacgtcatgaatatcagcccctttatcaaccggaaca 87
>gb|AC007153.2| Arabidopsis thaliana chromosome I BAC F3F20 genomic sequence, complete
sequence
Length = 103223
Score = 58.0 bits (29), Expect = 3e-006
Identities = 110/137 (80%)
Strand = Plus / Plus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
|||||||| || || ||||||||||| ||||| ||||| || ||||| |||| |||||||
Sbjct: 29450 atacgagagatttgtagacctctactaaaggcttggttaaagagcattcttgtctggaac 29509
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatg 278
|| || ||||| || ||||| || | || || | || ||||||| |||||||||||
Sbjct: 29510 tcagacacaaaaggaaaccaggccaaaaacgcaactggtgtgaacagaagcaagcccatc 29569
Query: 279 atgatctcatagcctcg 295
| |||||| ||||||||
Sbjct: 29570 acgatctcgtagcctcg 29586
Score = 50.1 bits (25), Expect = 6e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 363 agaagcaaaccccatccagttggcatgaacgcaaggatgca 403
||||||| |||||||||||||||||||| ||||| |||||
Sbjct: 29752 agaagcattccccatccagttggcatgaaggcaagcatgca 29792
>gb|AC005106.2|AC005106 Genomic sequence for Arabidopsis thaliana BAC T25N20 from chromosome I,
complete sequence
Length = 84203
Score = 58.0 bits (29), Expect = 3e-006
Identities = 110/137 (80%)
Strand = Plus / Plus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
|||||||| || || ||||||||||| ||||| ||||| || ||||| |||| |||||||
Sbjct: 79999 atacgagagatttgtagacctctactaaaggcttggttaaagagcattcttgtctggaac 80058
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatg 278
|| || ||||| || ||||| || | || || | || ||||||| |||||||||||
Sbjct: 80059 tcagacacaaaaggaaaccaggccaaaaacgcaactggtgtgaacagaagcaagcccatc 80118
Query: 279 atgatctcatagcctcg 295
| |||||| ||||||||
Sbjct: 80119 acgatctcgtagcctcg 80135
Score = 50.1 bits (25), Expect = 6e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 363 agaagcaaaccccatccagttggcatgaacgcaaggatgca 403
||||||| |||||||||||||||||||| ||||| |||||
Sbjct: 80301 agaagcattccccatccagttggcatgaaggcaagcatgca 80341
>emb|BX819158.1|CNS0A8YL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB52ZD04 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1385
Score = 58.0 bits (29), Expect = 3e-006
Identities = 110/137 (80%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| |||| ||||| ||||| || || || ||||| || ||||| |||| ||| |||
Sbjct: 1270 atacgtgaaaactgcaatcctctgctaaatgcttggttaaagagcattcttgtctgaaac 1211
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatg 278
|| || || |||||||||||||| ||| | || | ||| |||||||| || || ||||||
Sbjct: 1210 tcagacacgaacgggaaccaagccagggacgctaccggagtgaacaaaagtaaacccatg 1151
Query: 279 atgatctcatagcctcg 295
| ||||||||||||||
Sbjct: 1150 agaatctcatagcctcg 1134
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 58.0 bits (29), Expect = 3e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 461 gataaacgttatgaatatcagccccttgatcagccggaaca 501
||||||||| ||||||||||||||||| |||| ||||||||
Sbjct: 3923868 gataaacgtcatgaatatcagcccctttatcaaccggaaca 3923908
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 156 aggatacgagaaatctgcagacctctactgaa 187
||||||||||| ||||| ||||||||||||||
Sbjct: 3923464 aggatacgagagatctgaagacctctactgaa 3923495
>emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project)
Length = 90020
Score = 58.0 bits (29), Expect = 3e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 461 gataaacgttatgaatatcagccccttgatcagccggaaca 501
||||||||| ||||||||||||||||| |||| ||||||||
Sbjct: 62709 gataaacgtcatgaatatcagcccctttatcaaccggaaca 62749
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 156 aggatacgagaaatctgcagacctctactgaa 187
||||||||||| ||||| ||||||||||||||
Sbjct: 62305 aggatacgagagatctgaagacctctactgaa 62336
>ref|NM_100436.2| Arabidopsis thaliana CALS1 (CALLOSE SYNTHASE 1); transferase,
transferring glycosyl groups AT1G05570 (CALS1) mRNA,
complete cds
Length = 6022
Score = 58.0 bits (29), Expect = 3e-006
Identities = 110/137 (80%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
|||||||| || || ||||||||||| ||||| ||||| || ||||| |||| |||||||
Sbjct: 5816 atacgagagatttgtagacctctactaaaggcttggttaaagagcattcttgtctggaac 5757
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatg 278
|| || ||||| || ||||| || | || || | || ||||||| |||||||||||
Sbjct: 5756 tcagacacaaaaggaaaccaggccaaaaacgcaactggtgtgaacagaagcaagcccatc 5697
Query: 279 atgatctcatagcctcg 295
| |||||| ||||||||
Sbjct: 5696 acgatctcgtagcctcg 5680
Score = 54.0 bits (27), Expect = 4e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 353 ttgtgctatcagaagcaaaccccatccagttggcatgaacgcaaggatgca 403
|||||| || ||||||| |||||||||||||||||||| ||||| |||||
Sbjct: 5622 ttgtgcaatgagaagcattccccatccagttggcatgaaggcaagcatgca 5572
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 58.0 bits (29), Expect = 3e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 461 gataaacgttatgaatatcagccccttgatcagccggaaca 501
||||||||| ||||||||||||||||| |||| ||||||||
Sbjct: 4110895 gataaacgtcatgaatatcagcccctttatcaaccggaaca 4110935
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 156 aggatacgagaaatctgcagacctctactgaa 187
||||||||||| ||||| ||||||||||||||
Sbjct: 4110491 aggatacgagagatctgaagacctctactgaa 4110522
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 58.0 bits (29), Expect = 3e-006
Identities = 110/137 (80%)
Strand = Plus / Plus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
|||||||| || || ||||||||||| ||||| ||||| || ||||| |||| |||||||
Sbjct: 1647925 atacgagagatttgtagacctctactaaaggcttggttaaagagcattcttgtctggaac 1647984
Query: 219 tccgaaacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatg 278
|| || ||||| || ||||| || | || || | || ||||||| |||||||||||
Sbjct: 1647985 tcagacacaaaaggaaaccaggccaaaaacgcaactggtgtgaacagaagcaagcccatc 1648044
Query: 279 atgatctcatagcctcg 295
| |||||| ||||||||
Sbjct: 1648045 acgatctcgtagcctcg 1648061
Score = 50.1 bits (25), Expect = 6e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 363 agaagcaaaccccatccagttggcatgaacgcaaggatgca 403
||||||| |||||||||||||||||||| ||||| |||||
Sbjct: 1648227 agaagcattccccatccagttggcatgaaggcaagcatgca 1648267
>gb|AV546456.1|AV546456 AV546456 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL14d09F 3', mRNA sequence
Length = 281
Score = 56.0 bits (28), Expect = 1e-005
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
|||||||| || || ||||||||||| ||||| ||||| || ||||| |||| |||||||
Sbjct: 176 atacgagagatttgtagacctctactaaaggcttggttaaagagcattcttgtctggaac 235
Query: 219 tccgaaacaaacgggaacca 238
|| || ||||| || |||||
Sbjct: 236 tcagacacaaaaggaaacca 255
>gb|AU228526.1|AU228526 AU228526 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-26-N18 3',
mRNA sequence
Length = 423
Score = 54.0 bits (27), Expect = 4e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 353 ttgtgctatcagaagcaaaccccatccagttggcatgaacgcaaggatgca 403
|||||| || ||||||| |||||||||||||||||||| ||||| |||||
Sbjct: 366 ttgtgcaatgagaagcattccccatccagttggcatgaaggcaagcatgca 416
>emb|BX572386.1| Arabidopsis thaliana T-DNA flanking sequence GK-549C06-020727,
genomic survey sequence
Length = 430
Score = 50.1 bits (25), Expect = 6e-004
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| |||||||||| ||||| || || || ||||| || ||||| |||| ||| |||
Sbjct: 334 atacgtgaaatctgcaatcctctgctaaatgcttggttaaagagcattcttgtctgaaac 393
Query: 219 tccgaaacaaacgggaaccaagcgaggaa 247
|| || || |||||||||||||| |||||
Sbjct: 394 tcagacacgaacgggaaccaagccaggaa 422
>gb|AQ959102.1|AQ959102 LEREH30TR LERE Arabidopsis thaliana genomic clone LEREH30, DNA
sequence
Length = 382
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 156 aggatacgagaaatctgcagacctctactgaa 187
||||||||||| ||||| ||||||||||||||
Sbjct: 37 aggatacgagagatctgaagacctctactgaa 68
>gb|BH810820.1|BH810820 SALK_051242 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_051242, DNA sequence
Length = 327
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 156 aggatacgagaaatctgcagacctctactgaa 187
||||||||||| ||||| ||||||||||||||
Sbjct: 292 aggatacgagagatctgaagacctctactgaa 323
>gb|AV534683.1|AV534683 AV534683 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB084c02F 3', mRNA sequence
Length = 455
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 156 aggatacgagaaatctgcagacctctactgaa 187
||||||||||| ||||| ||||||||||||||
Sbjct: 194 aggatacgagagatctgaagacctctactgaa 225
>gb|BX836766.1|BX836766 BX836766 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB52ZE04 3PRIM, mRNA sequence
Length = 1060
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 174 agacctctactgaaggcctggttgaacagcatccttggctggaactc 220
||||||||||| ||||| ||||| || ||||| |||| |||||||||
Sbjct: 152 agacctctactaaaggcttggttaaagagcattcttgtctggaactc 198
Score = 44.1 bits (22), Expect = 0.038
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 372 ccccatccagttggcatgaacgcaag 397
|||||||||||||||||||| |||||
Sbjct: 360 ccccatccagttggcatgaaggcaag 385
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 300,068
Number of Sequences: 1013581
Number of extensions: 300068
Number of successful extensions: 19971
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19308
Number of HSP's gapped (non-prelim): 661
length of query: 830
length of database: 908,940,872
effective HSP length: 20
effective length of query: 810
effective length of database: 888,669,252
effective search space: 719822094120
effective search space used: 719822094120
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)