BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192593.2.1
(800 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV782507.1|AV782507 AV782507 RAFL4 Arabidopsis thaliana ... 42 0.14
gb|AV547618.1|AV547618 AV547618 Arabidopsis thaliana roots ... 42 0.14
gb|AV567671.1|AV567671 AV567671 Arabidopsis thaliana green ... 42 0.14
gb|BP786355.1|BP786355 BP786355 RAFL7 Arabidopsis thaliana ... 42 0.14
gb|BP802440.1|BP802440 BP802440 RAFL14 Arabidopsis thaliana... 42 0.14
gb|AY056398.1| Arabidopsis thaliana aldehyde dehydrogenase ... 42 0.14
gb|AF349448.1| Arabidopsis thaliana aldehyde dehydrogenase ... 42 0.14
emb|BX825724.1|CNS0A6CJ Arabidopsis thaliana Full-length cD... 42 0.14
emb|CQ799192.1| Sequence 21 from Patent EP1411125 42 0.14
dbj|AK221230.1| Arabidopsis thaliana mRNA for aldehyde dehy... 42 0.14
ref|NM_113359.2| Arabidopsis thaliana ALDH2C4 (REDUCED EPID... 42 0.14
>gb|AV782507.1|AV782507 AV782507 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-18-B19 3',
mRNA sequence
Length = 641
Score = 42.1 bits (21), Expect = 0.14
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 291 gatgaaatctttgggccggtgatggctctcatgaaattcaagaccgtggagga 343
|||||||||||||| || || ||| | || |||||||||||||| || |||||
Sbjct: 479 gatgaaatctttggaccagtcatgtcactgatgaaattcaagacggtagagga 427
>gb|AV547618.1|AV547618 AV547618 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL36b04F 3', mRNA sequence
Length = 499
Score = 42.1 bits (21), Expect = 0.14
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 291 gatgaaatctttgggccggtgatggctctcatgaaattcaagaccgtggagga 343
|||||||||||||| || || ||| | || |||||||||||||| || |||||
Sbjct: 482 gatgaaatctttggaccagtcatgtcactgatgaaattcaagacggtagagga 430
>gb|AV567671.1|AV567671 AV567671 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQL18g04F 3', mRNA sequence
Length = 543
Score = 42.1 bits (21), Expect = 0.14
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 291 gatgaaatctttgggccggtgatggctctcatgaaattcaagaccgtggagga 343
|||||||||||||| || || ||| | || |||||||||||||| || |||||
Sbjct: 487 gatgaaatctttggaccagtcatgtcactgatgaaattcaagacggtagagga 435
>gb|BP786355.1|BP786355 BP786355 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-98-N17 3',
mRNA sequence
Length = 412
Score = 42.1 bits (21), Expect = 0.14
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 291 gatgaaatctttgggccggtgatggctctcatgaaattcaagaccgtggagga 343
|||||||||||||| || || ||| | || |||||||||||||| || |||||
Sbjct: 389 gatgaaatctttggaccagtcatgtcactgatgaaattcaagacggtagagga 337
>gb|BP802440.1|BP802440 BP802440 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-24-N10 5',
mRNA sequence
Length = 354
Score = 42.1 bits (21), Expect = 0.14
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 291 gatgaaatctttgggccggtgatggctctcatgaaattcaagaccgtggagga 343
|||||||||||||| || || ||| | || |||||||||||||| || |||||
Sbjct: 229 gatgaaatctttggaccagtcatgtcactgatgaaattcaagacggtagagga 281
>gb|AY056398.1| Arabidopsis thaliana aldehyde dehydrogenase mRNA, complete cds
Length = 1709
Score = 42.1 bits (21), Expect = 0.14
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 291 gatgaaatctttgggccggtgatggctctcatgaaattcaagaccgtggagga 343
|||||||||||||| || || ||| | || |||||||||||||| || |||||
Sbjct: 1230 gatgaaatctttggaccagtcatgtcactgatgaaattcaagacggtagagga 1282
>gb|AF349448.1| Arabidopsis thaliana aldehyde dehydrogenase AtALDH1a mRNA, complete
cds
Length = 1614
Score = 42.1 bits (21), Expect = 0.14
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 291 gatgaaatctttgggccggtgatggctctcatgaaattcaagaccgtggagga 343
|||||||||||||| || || ||| | || |||||||||||||| || |||||
Sbjct: 1224 gatgaaatctttggaccagtcatgtcactgatgaaattcaagacggtagagga 1276
>emb|BX825724.1|CNS0A6CJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL58ZG10 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1645
Score = 42.1 bits (21), Expect = 0.14
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 291 gatgaaatctttgggccggtgatggctctcatgaaattcaagaccgtggagga 343
|||||||||||||| || || ||| | || |||||||||||||| || |||||
Sbjct: 1210 gatgaaatctttggaccagtcatgtcactgatgaaattcaagacggtagagga 1262
>emb|CQ799192.1| Sequence 21 from Patent EP1411125
Length = 1614
Score = 42.1 bits (21), Expect = 0.14
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 291 gatgaaatctttgggccggtgatggctctcatgaaattcaagaccgtggagga 343
|||||||||||||| || || ||| | || |||||||||||||| || |||||
Sbjct: 1224 gatgaaatctttggaccagtcatgtcactgatgaaattcaagacggtagagga 1276
>dbj|AK221230.1| Arabidopsis thaliana mRNA for aldehyde dehydrogenase, partial cds,
clone: RAFL23-24-N10
Length = 722
Score = 42.1 bits (21), Expect = 0.14
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 291 gatgaaatctttgggccggtgatggctctcatgaaattcaagaccgtggagga 343
|||||||||||||| || || ||| | || |||||||||||||| || |||||
Sbjct: 231 gatgaaatctttggaccagtcatgtcactgatgaaattcaagacggtagagga 283
>ref|NM_113359.2| Arabidopsis thaliana ALDH2C4 (REDUCED EPIDERMAL FLUORESCENCE1);
aldehyde dehydrogenase/ oxidoreductase AT3G24503
(ALDH2C4) mRNA, complete cds
Length = 1716
Score = 42.1 bits (21), Expect = 0.14
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 291 gatgaaatctttgggccggtgatggctctcatgaaattcaagaccgtggagga 343
|||||||||||||| || || ||| | || |||||||||||||| || |||||
Sbjct: 1230 gatgaaatctttggaccagtcatgtcactgatgaaattcaagacggtagagga 1282
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 269,002
Number of Sequences: 1013581
Number of extensions: 269002
Number of successful extensions: 19663
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19637
Number of HSP's gapped (non-prelim): 26
length of query: 800
length of database: 908,940,872
effective HSP length: 20
effective length of query: 780
effective length of database: 888,669,252
effective search space: 693162016560
effective search space used: 693162016560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)