BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192420.2.1
(738 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB044785.1| Arabidopsis thaliana ftr mRNA for katanin, ... 113 4e-023
gb|AF048706.1|AF048706 Arabidopsis thaliana CAD ATPase (AAA... 100 7e-019
gb|AF358779.1|AF358779 Arabidopsis thaliana katanin (KTN1) ... 100 7e-019
gb|AY059919.1| Arabidopsis thaliana CAD ATPase (AAA1) (F5I6... 100 7e-019
gb|BT000149.1| Arabidopsis thaliana CAD ATPase (AAA1) (At1g... 100 7e-019
ref|NM_106684.2| Arabidopsis thaliana ERH3 (ECTOPIC ROOT HA... 100 7e-019
gb|AF359248.1|AF359248 Arabidopsis thaliana katanin 1 (KTN1... 74 4e-011
gb|AC018848.6|AC018848 Arabidopsis thaliana chromosome 1 BA... 74 4e-011
emb|BX813765.1|CNS0ADG9 Arabidopsis thaliana Full-length cD... 74 4e-011
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 74 4e-011
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 74 4e-011
gb|BP609505.1|BP609505 BP609505 RAFL16 Arabidopsis thaliana... 58 2e-006
gb|BP611018.1|BP611018 BP611018 RAFL16 Arabidopsis thaliana... 50 5e-004
gb|BP587701.1|BP587701 BP587701 RAFL15 Arabidopsis thaliana... 44 0.034
>dbj|AB044785.1| Arabidopsis thaliana ftr mRNA for katanin, complete cds
Length = 1904
Score = 113 bits (57), Expect = 4e-023
Identities = 231/289 (79%)
Strand = Plus / Plus
Query: 26 tggctgctacaaattttccatgggatattgatgaggcactgaggcgaaggctggagaagc 85
|||| ||||| || || |||||||| || ||||| || || ||| | ||| |||| || |
Sbjct: 1313 tggcagctaccaacttcccatgggacatagatgaagctctcaggaggaggttggaaaaac 1372
Query: 86 gtatttatattccacttccagattttgaaagtagaaaggcacttatcaacattaatctta 145
|||| ||||| ||||||||||||||||||||| | ||||| |||||||| || ||||| |
Sbjct: 1373 gtatatatatcccacttccagattttgaaagtcgtaaggctcttatcaatatcaatctga 1432
Query: 146 gaacagttcagatagccgcagatgttaacatcgacgaggttgctcggaggacagaaggct 205
||||||| || | || ||||||||||| || || || || ||||| || ||||| |
Sbjct: 1433 gaacagtcgaggtggcgagtgatgttaacattgaagatgtggcccggagaacggaagggt 1492
Query: 206 atagtggagatgatctgacaaacgtttgccgcgatgcctcaatgaatggcatgaggcgca 265
|||||||||| |||||||| ||||| ||| | ||||| |||||||| || ||| |||| |
Sbjct: 1493 atagtggagacgatctgactaacgtgtgcagggatgcatcaatgaacgggatgcggcgta 1552
Query: 266 agatagcaggcaagacccgcgacgagatcaagaacatgtcaaaggacga 314
||||||| || || || | || ||||| ||||||||||| || |||||
Sbjct: 1553 agatagctgggaaaacgagggatgagataaagaacatgtcgaaagacga 1601
>gb|AF048706.1|AF048706 Arabidopsis thaliana CAD ATPase (AAA1) mRNA, complete cds
Length = 1698
Score = 99.6 bits (50), Expect = 7e-019
Identities = 185/230 (80%)
Strand = Plus / Plus
Query: 85 cgtatttatattccacttccagattttgaaagtagaaaggcacttatcaacattaatctt 144
||||| ||||| ||||||||||||||||||||| | ||||| |||||||| || |||||
Sbjct: 1228 cgtatatatatcccacttccagattttgaaagtcgtaaggctcttatcaatatcaatctg 1287
Query: 145 agaacagttcagatagccgcagatgttaacatcgacgaggttgctcggaggacagaaggc 204
||||||||| || | || ||||||||||| || || || || ||||| || |||||
Sbjct: 1288 agaacagttgaggtggcgagtgatgttaacattgaagatgtggcccggagaacggaaggg 1347
Query: 205 tatagtggagatgatctgacaaacgtttgccgcgatgcctcaatgaatggcatgaggcgc 264
|| |||||||| |||||||| ||||| ||| | || || |||||||| || ||| ||||
Sbjct: 1348 tacagtggagacgatctgactaacgtgtgcagggacgcatcaatgaacgggatgcggcgt 1407
Query: 265 aagatagcaggcaagacccgcgacgagatcaagaacatgtcaaaggacga 314
|||||||| || || || | || ||||| ||||||||||| || |||||
Sbjct: 1408 aagatagcggggaaaacgagagatgagataaagaacatgtcgaaagacga 1457
>gb|AF358779.1|AF358779 Arabidopsis thaliana katanin (KTN1) mRNA, complete cds
Length = 1707
Score = 99.6 bits (50), Expect = 7e-019
Identities = 185/230 (80%)
Strand = Plus / Plus
Query: 85 cgtatttatattccacttccagattttgaaagtagaaaggcacttatcaacattaatctt 144
||||| ||||| ||||||||||||||||||||| | ||||| |||||||| || |||||
Sbjct: 1241 cgtatatatatcccacttccagattttgaaagtcgtaaggctcttatcaatatcaatctg 1300
Query: 145 agaacagttcagatagccgcagatgttaacatcgacgaggttgctcggaggacagaaggc 204
||||||||| || | || ||||||||||| || || || || ||||| || |||||
Sbjct: 1301 agaacagttgaggtggcgagtgatgttaacattgaagatgtggcccggagaacggaaggg 1360
Query: 205 tatagtggagatgatctgacaaacgtttgccgcgatgcctcaatgaatggcatgaggcgc 264
|| |||||||| |||||||| ||||| ||| | || || |||||||| || ||| ||||
Sbjct: 1361 tacagtggagacgatctgactaacgtgtgcagggacgcatcaatgaacgggatgcggcgt 1420
Query: 265 aagatagcaggcaagacccgcgacgagatcaagaacatgtcaaaggacga 314
|||||||| || || || | || ||||| ||||||||||| || |||||
Sbjct: 1421 aagatagcggggaaaacgagagatgagataaagaacatgtcgaaagacga 1470
>gb|AY059919.1| Arabidopsis thaliana CAD ATPase (AAA1) (F5I6.10) mRNA, complete cds
Length = 1885
Score = 99.6 bits (50), Expect = 7e-019
Identities = 185/230 (80%)
Strand = Plus / Plus
Query: 85 cgtatttatattccacttccagattttgaaagtagaaaggcacttatcaacattaatctt 144
||||| ||||| ||||||||||||||||||||| | ||||| |||||||| || |||||
Sbjct: 1374 cgtatatatatcccacttccagattttgaaagtcgtaaggctcttatcaatatcaatctg 1433
Query: 145 agaacagttcagatagccgcagatgttaacatcgacgaggttgctcggaggacagaaggc 204
||||||||| || | || ||||||||||| || || || || ||||| || |||||
Sbjct: 1434 agaacagttgaggtggcgagtgatgttaacattgaagatgtggcccggagaacggaaggg 1493
Query: 205 tatagtggagatgatctgacaaacgtttgccgcgatgcctcaatgaatggcatgaggcgc 264
|| |||||||| |||||||| ||||| ||| | || || |||||||| || ||| ||||
Sbjct: 1494 tacagtggagacgatctgactaacgtgtgcagggacgcatcaatgaacgggatgcggcgt 1553
Query: 265 aagatagcaggcaagacccgcgacgagatcaagaacatgtcaaaggacga 314
|||||||| || || || | || ||||| ||||||||||| || |||||
Sbjct: 1554 aagatagcggggaaaacgagagatgagataaagaacatgtcgaaagacga 1603
>gb|BT000149.1| Arabidopsis thaliana CAD ATPase (AAA1) (At1g80350) mRNA, complete cds
Length = 1627
Score = 99.6 bits (50), Expect = 7e-019
Identities = 185/230 (80%)
Strand = Plus / Plus
Query: 85 cgtatttatattccacttccagattttgaaagtagaaaggcacttatcaacattaatctt 144
||||| ||||| ||||||||||||||||||||| | ||||| |||||||| || |||||
Sbjct: 1219 cgtatatatatcccacttccagattttgaaagtcgtaaggctcttatcaatatcaatctg 1278
Query: 145 agaacagttcagatagccgcagatgttaacatcgacgaggttgctcggaggacagaaggc 204
||||||||| || | || ||||||||||| || || || || ||||| || |||||
Sbjct: 1279 agaacagttgaggtggcgagtgatgttaacattgaagatgtggcccggagaacggaaggg 1338
Query: 205 tatagtggagatgatctgacaaacgtttgccgcgatgcctcaatgaatggcatgaggcgc 264
|| |||||||| |||||||| ||||| ||| | || || |||||||| || ||| ||||
Sbjct: 1339 tacagtggagacgatctgactaacgtgtgcagggacgcatcaatgaacgggatgcggcgt 1398
Query: 265 aagatagcaggcaagacccgcgacgagatcaagaacatgtcaaaggacga 314
|||||||| || || || | || ||||| ||||||||||| || |||||
Sbjct: 1399 aagatagcggggaaaacgagagatgagataaagaacatgtcgaaagacga 1448
>ref|NM_106684.2| Arabidopsis thaliana ERH3 (ECTOPIC ROOT HAIR 3); ATP binding /
nucleoside-triphosphatase/ nucleotide binding AT1G80350
(ERH3) mRNA, complete cds
Length = 1902
Score = 99.6 bits (50), Expect = 7e-019
Identities = 185/230 (80%)
Strand = Plus / Plus
Query: 85 cgtatttatattccacttccagattttgaaagtagaaaggcacttatcaacattaatctt 144
||||| ||||| ||||||||||||||||||||| | ||||| |||||||| || |||||
Sbjct: 1374 cgtatatatatcccacttccagattttgaaagtcgtaaggctcttatcaatatcaatctg 1433
Query: 145 agaacagttcagatagccgcagatgttaacatcgacgaggttgctcggaggacagaaggc 204
||||||||| || | || ||||||||||| || || || || ||||| || |||||
Sbjct: 1434 agaacagttgaggtggcgagtgatgttaacattgaagatgtggcccggagaacggaaggg 1493
Query: 205 tatagtggagatgatctgacaaacgtttgccgcgatgcctcaatgaatggcatgaggcgc 264
|| |||||||| |||||||| ||||| ||| | || || |||||||| || ||| ||||
Sbjct: 1494 tacagtggagacgatctgactaacgtgtgcagggacgcatcaatgaacgggatgcggcgt 1553
Query: 265 aagatagcaggcaagacccgcgacgagatcaagaacatgtcaaaggacga 314
|||||||| || || || | || ||||| ||||||||||| || |||||
Sbjct: 1554 aagatagcggggaaaacgagagatgagataaagaacatgtcgaaagacga 1603
>gb|AF359248.1|AF359248 Arabidopsis thaliana katanin 1 (KTN1) gene, complete cds
Length = 4600
Score = 73.8 bits (37), Expect = 4e-011
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 85 cgtatttatattccacttccagattttgaaagtagaaaggcacttatcaacattaatctt 144
||||| ||||| ||||||||||||||||||||| | ||||| |||||||| || |||||
Sbjct: 3120 cgtatatatatcccacttccagattttgaaagtcgtaaggctcttatcaatatcaatctg 3179
Query: 145 agaacagtt 153
|||||||||
Sbjct: 3180 agaacagtt 3188
Score = 58.0 bits (29), Expect = 2e-006
Identities = 119/149 (79%)
Strand = Plus / Plus
Query: 166 gatgttaacatcgacgaggttgctcggaggacagaaggctatagtggagatgatctgaca 225
||||||||||| || || || || ||||| || ||||| || |||||||| ||||||||
Sbjct: 3290 gatgttaacattgaagatgtggcccggagaacggaagggtacagtggagacgatctgact 3349
Query: 226 aacgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgc 285
||||| ||| | || || |||||||| || ||| |||| |||||||| || || || |
Sbjct: 3350 aacgtgtgcagggacgcatcaatgaacgggatgcggcgtaagatagcggggaaaacgaga 3409
Query: 286 gacgagatcaagaacatgtcaaaggacga 314
|| ||||| ||||||||||| || |||||
Sbjct: 3410 gatgagataaagaacatgtcgaaagacga 3438
>gb|AC018848.6|AC018848 Arabidopsis thaliana chromosome 1 BAC F5I6 genomic sequence, complete
sequence
Length = 132990
Score = 73.8 bits (37), Expect = 4e-011
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 85 cgtatttatattccacttccagattttgaaagtagaaaggcacttatcaacattaatctt 144
||||| ||||| ||||||||||||||||||||| | ||||| |||||||| || |||||
Sbjct: 33461 cgtatatatatcccacttccagattttgaaagtcgtaaggctcttatcaatatcaatctg 33402
Query: 145 agaacagtt 153
|||||||||
Sbjct: 33401 agaacagtt 33393
Score = 58.0 bits (29), Expect = 2e-006
Identities = 119/149 (79%)
Strand = Plus / Minus
Query: 166 gatgttaacatcgacgaggttgctcggaggacagaaggctatagtggagatgatctgaca 225
||||||||||| || || || || ||||| || ||||| || |||||||| ||||||||
Sbjct: 33291 gatgttaacattgaagatgtggcccggagaacggaagggtacagtggagacgatctgact 33232
Query: 226 aacgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgc 285
||||| ||| | || || |||||||| || ||| |||| |||||||| || || || |
Sbjct: 33231 aacgtgtgcagggacgcatcaatgaacgggatgcggcgtaagatagcggggaaaacgaga 33172
Query: 286 gacgagatcaagaacatgtcaaaggacga 314
|| ||||| ||||||||||| || |||||
Sbjct: 33171 gatgagataaagaacatgtcgaaagacga 33143
>emb|BX813765.1|CNS0ADG9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB38ZH06 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1821
Score = 73.8 bits (37), Expect = 4e-011
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 85 cgtatttatattccacttccagattttgaaagtagaaaggcacttatcaacattaatctt 144
||||| ||||| ||||||||||||||||||||| | ||||| |||||||| || |||||
Sbjct: 1358 cgtatatatatcccacttccagattttgaaagtcgtaaggctcttatcaatatcaatctg 1417
Query: 145 agaacagtt 153
|||||||||
Sbjct: 1418 agaacagtt 1426
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 73.8 bits (37), Expect = 4e-011
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 85 cgtatttatattccacttccagattttgaaagtagaaaggcacttatcaacattaatctt 144
||||| ||||| ||||||||||||||||||||| | ||||| |||||||| || |||||
Sbjct: 14447153 cgtatatatatcccacttccagattttgaaagtcgtaaggctcttatcaatatcaatctg 14447094
Query: 145 agaacagtt 153
|||||||||
Sbjct: 14447093 agaacagtt 14447085
Score = 58.0 bits (29), Expect = 2e-006
Identities = 119/149 (79%)
Strand = Plus / Minus
Query: 166 gatgttaacatcgacgaggttgctcggaggacagaaggctatagtggagatgatctgaca 225
||||||||||| || || || || ||||| || ||||| || |||||||| ||||||||
Sbjct: 14446983 gatgttaacattgaagatgtggcccggagaacggaagggtacagtggagacgatctgact 14446924
Query: 226 aacgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgc 285
||||| ||| | || || |||||||| || ||| |||| |||||||| || || || |
Sbjct: 14446923 aacgtgtgcagggacgcatcaatgaacgggatgcggcgtaagatagcggggaaaacgaga 14446864
Query: 286 gacgagatcaagaacatgtcaaaggacga 314
|| ||||| ||||||||||| || |||||
Sbjct: 14446863 gatgagataaagaacatgtcgaaagacga 14446835
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 73.8 bits (37), Expect = 4e-011
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 85 cgtatttatattccacttccagattttgaaagtagaaaggcacttatcaacattaatctt 144
||||| ||||| ||||||||||||||||||||| | ||||| |||||||| || |||||
Sbjct: 30210833 cgtatatatatcccacttccagattttgaaagtcgtaaggctcttatcaatatcaatctg 30210774
Query: 145 agaacagtt 153
|||||||||
Sbjct: 30210773 agaacagtt 30210765
Score = 58.0 bits (29), Expect = 2e-006
Identities = 119/149 (79%)
Strand = Plus / Minus
Query: 166 gatgttaacatcgacgaggttgctcggaggacagaaggctatagtggagatgatctgaca 225
||||||||||| || || || || ||||| || ||||| || |||||||| ||||||||
Sbjct: 30210663 gatgttaacattgaagatgtggcccggagaacggaagggtacagtggagacgatctgact 30210604
Query: 226 aacgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgc 285
||||| ||| | || || |||||||| || ||| |||| |||||||| || || || |
Sbjct: 30210603 aacgtgtgcagggacgcatcaatgaacgggatgcggcgtaagatagcggggaaaacgaga 30210544
Query: 286 gacgagatcaagaacatgtcaaaggacga 314
|| ||||| ||||||||||| || |||||
Sbjct: 30210543 gatgagataaagaacatgtcgaaagacga 30210515
>gb|BP609505.1|BP609505 BP609505 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-82-G01 3',
mRNA sequence
Length = 474
Score = 58.0 bits (29), Expect = 2e-006
Identities = 119/149 (79%)
Strand = Plus / Minus
Query: 166 gatgttaacatcgacgaggttgctcggaggacagaaggctatagtggagatgatctgaca 225
||||||||||| || || || || ||||| || ||||| || |||||||| ||||||||
Sbjct: 457 gatgttaacattgaagatgtggcccggagaacggaagggtacagtggagacgatctgact 398
Query: 226 aacgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgc 285
||||| ||| | || || |||||||| || ||| |||| |||||||| || || || |
Sbjct: 397 aacgtgtgcagggacgcatcaatgaacgggatgcggcgtaagatagcggggaaaacgaga 338
Query: 286 gacgagatcaagaacatgtcaaaggacga 314
|| ||||| ||||||||||| || |||||
Sbjct: 337 gatgagataaagaacatgtcgaaagacga 309
>gb|BP611018.1|BP611018 BP611018 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-84-E09 3',
mRNA sequence
Length = 425
Score = 50.1 bits (25), Expect = 5e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 190 cggaggacagaaggctatagtggagatgatctgacaaacgtttgccgcgatgcctcaatg 249
||||| || ||||| || |||||||| |||||||| ||||| ||| | || || ||||||
Sbjct: 414 cggagaacggaagggtacagtggagacgatctgactaacgtgtgcagggacgcatcaatg 355
Query: 250 aatggcatgaggcgcaagatagcaggcaagacccgcgacgagatcaagaacatgtcaaag 309
|| || ||| |||| |||||||| || || || | || ||||| ||||||||||| ||
Sbjct: 354 aacgggatgcggcgtaagatagcggggaaaacgagagatgagataaagaacatgtcgaaa 295
Query: 310 gacga 314
|||||
Sbjct: 294 gacga 290
>gb|BP587701.1|BP587701 BP587701 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-43-J06 3',
mRNA sequence
Length = 417
Score = 44.1 bits (22), Expect = 0.034
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 166 gatgttaacatcgacgaggttgctcggaggacagaaggctatagtggagatgatctgaca 225
||||||||||| || || || || ||||| || ||||| || |||||||| ||||||||
Sbjct: 412 gatgttaacattgaagatgtggcccggagaacggaagggtacagtggagacgatctgact 353
Query: 226 aacgtttgccgcgatgcctcaatgaa 251
||||| ||| | || || ||||||||
Sbjct: 352 aacgtgtgcagggacgcatcaatgaa 327
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 325,425
Number of Sequences: 1013581
Number of extensions: 325425
Number of successful extensions: 25417
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25244
Number of HSP's gapped (non-prelim): 162
length of query: 738
length of database: 908,940,872
effective HSP length: 20
effective length of query: 718
effective length of database: 888,669,252
effective search space: 638064522936
effective search space used: 638064522936
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)