BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161284.2.6
(621 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV782349.1|AV782349 AV782349 RAFL4 Arabidopsis thaliana ... 107 2e-021
gb|AV785010.1|AV785010 AV785010 RAFL6 Arabidopsis thaliana ... 107 2e-021
gb|AV821803.1|AV821803 AV821803 RAFL4 Arabidopsis thaliana ... 107 2e-021
gb|AV823925.1|AV823925 AV823925 RAFL6 Arabidopsis thaliana ... 107 2e-021
gb|AV533918.1|AV533918 AV533918 Arabidopsis thaliana flower... 107 2e-021
gb|AV534287.1|AV534287 AV534287 Arabidopsis thaliana flower... 107 2e-021
gb|AV535171.1|AV535171 AV535171 Arabidopsis thaliana flower... 107 2e-021
gb|AV535455.1|AV535455 AV535455 Arabidopsis thaliana flower... 107 2e-021
gb|CK120023.1|CK120023 218p08.p1 AtM1 Arabidopsis thaliana ... 107 2e-021
gb|BP653691.1|BP653691 BP653691 RAFL19 Arabidopsis thaliana... 107 2e-021
gb|BP802121.1|BP802121 BP802121 RAFL14 Arabidopsis thaliana... 107 2e-021
gb|BP865594.1|BP865594 BP865594 RAFL21 Arabidopsis thaliana... 107 2e-021
gb|BP866681.1|BP866681 BP866681 RAFL21 Arabidopsis thaliana... 107 2e-021
gb|AY062818.1| Arabidopsis thaliana putative small nuclear ... 107 2e-021
gb|BT001203.1| Arabidopsis thaliana putative small nuclear ... 107 2e-021
gb|BT002035.1| Arabidopsis thaliana putative small nuclear ... 107 2e-021
gb|BT006498.1| Arabidopsis thaliana At2g23930 gene, complet... 107 2e-021
emb|BX825320.1|CNS0A7PN Arabidopsis thaliana Full-length cD... 107 2e-021
emb|BX825656.1|CNS0A7P7 Arabidopsis thaliana Full-length cD... 107 2e-021
emb|BX821884.1|CNS0AA5U Arabidopsis thaliana Full-length cD... 107 2e-021
ref|NM_127954.1| Arabidopsis thaliana unknown protein AT2G2... 107 2e-021
ref|NM_111983.4| Arabidopsis thaliana unknown protein AT3G1... 107 2e-021
gb|AY088256.1| Arabidopsis thaliana clone 4850 mRNA, comple... 100 6e-019
emb|BX820713.1|CNS0AA7G Arabidopsis thaliana Full-length cD... 100 6e-019
gb|BP859350.1|BP859350 BP859350 RAFL21 Arabidopsis thaliana... 94 3e-017
gb|AV532322.1|AV532322 AV532322 Arabidopsis thaliana flower... 72 1e-010
gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Rev... 70 5e-010
gb|BH751094.1|BH751094 SALK_049355.49.00.x Arabidopsis thal... 68 2e-009
gb|AC008153.5|AC008153 Arabidopsis thaliana chromosome 3 BA... 68 2e-009
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 68 2e-009
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 68 2e-009
gb|B29014.1|B29014 T23O17TR TAMU Arabidopsis thaliana genom... 66 8e-009
gb|B68003.1|B68003 T23O17TR.1 TAMU Arabidopsis thaliana gen... 66 8e-009
gb|AA597812.1|AA597812 29879 Lambda-PRL2 Arabidopsis thalia... 66 8e-009
gb|AC005170.3| Arabidopsis thaliana chromosome 2 clone T29E... 66 8e-009
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 66 8e-009
gb|BP671940.1|BP671940 BP671940 RAFL21 Arabidopsis thaliana... 58 2e-006
emb|BX661189.1| Arabidopsis thaliana T-DNA flanking sequenc... 46 0.007
emb|BX662798.1| Arabidopsis thaliana T-DNA flanking sequenc... 46 0.007
emb|BX663297.1| Arabidopsis thaliana T-DNA flanking sequenc... 46 0.007
gb|CB185570.1|CB185570 EST000103 Arabidopsis Salicylic Acid... 46 0.007
gb|CB185577.1|CB185577 EST000110 Arabidopsis Salicylic Acid... 46 0.007
gb|CB185485.1|CB185485 EST00018 Arabidopsis Salicylic Acid ... 46 0.007
gb|CB185533.1|CB185533 EST00066 Arabidopsis Salicylic Acid ... 46 0.007
gb|CB185851.1|CB185851 EST01042 Arabidopsis virulent Pseudo... 46 0.007
gb|BE845139.1|BE845139 AD07D05T7 AD A. thaliana (Col-0 gl1)... 44 0.028
gb|CB185474.1|CB185474 EST00007 Arabidopsis Salicylic Acid ... 44 0.028
gb|CB185495.1|CB185495 EST00028 Arabidopsis Salicylic Acid ... 44 0.028
gb|CB185508.1|CB185508 EST00041 Arabidopsis Salicylic Acid ... 44 0.028
gb|BE845176.1|BE845176 AD08A02T7 AD A. thaliana (Col-0 gl1)... 42 0.11
gb|CB185611.1|CB185611 EST00536 Arabidopsis avirulent Pseud... 42 0.11
gb|CB185622.1|CB185622 EST00547 Arabidopsis avirulent Pseud... 42 0.11
gb|CB185497.1|CB185497 EST00030 Arabidopsis Salicylic Acid ... 42 0.11
gb|CB185498.1|CB185498 EST00031 Arabidopsis Salicylic Acid ... 42 0.11
gb|CB185499.1|CB185499 EST00032 Arabidopsis Salicylic Acid ... 42 0.11
gb|CB185509.1|CB185509 EST00042 Arabidopsis Salicylic Acid ... 42 0.11
gb|CB185511.1|CB185511 EST00044 Arabidopsis Salicylic Acid ... 42 0.11
gb|CB185512.1|CB185512 EST00045 Arabidopsis Salicylic Acid ... 42 0.11
gb|CB185532.1|CB185532 EST00065 Arabidopsis Salicylic Acid ... 42 0.11
gb|CB185943.1|CB185943 EST01134 Arabidopsis virulent Pseudo... 42 0.11
gb|CB185573.1|CB185573 EST000106 Arabidopsis Salicylic Acid... 40 0.44
gb|CB185528.1|CB185528 EST00061 Arabidopsis Salicylic Acid ... 40 0.44
gb|CF772953.1|CF772953 AG_FSL_10D01 Arabidopsis ag-1 35S:AG... 40 0.44
gb|CF773912.1|CF773912 AG_FSL_24D10 Arabidopsis ag-1 35S:AG... 40 0.44
>gb|AV782349.1|AV782349 AV782349 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-16-J17 3',
mRNA sequence
Length = 539
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Plus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| || || || |||||||| || || || ||||| |||
Sbjct: 258 ctgtttcctctaatcaccaccatcccgatgtcggttttgtcgttaccgttcacctcaaca 317
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || ||||||||||| || || |||| |
Sbjct: 318 gtgttatccacaacaagattcatgaactgatcaaacccacgaagagttccagtaaccatt 377
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
||||| ||||| | ||| || || |||||||| |||||||||||||| ||||||||||||
Sbjct: 378 cggttagcattaagcttgatttggagcttcttatccatgtacttcttaagatccggaggc 437
Query: 465 tg 466
||
Sbjct: 438 tg 439
>gb|AV785010.1|AV785010 AV785010 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-10-G07 3',
mRNA sequence
Length = 551
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Plus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| ||||| || |||||||||| |||||||| || |||
Sbjct: 255 ctgtttcctcttatcaccaccatcccaatgtcagttttgtcatcaccattgacttcaaca 314
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || || ||||| || || || | ||| |
Sbjct: 315 gtgttatccacaacaagattcatgaactgatcaaagccacggagagttccaacaaccatt 374
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
| ||| ||||| | |||||| || || |||||||||||||||||||||||||| ||||||
Sbjct: 375 ctgttggcattaagcttaatttggagtttcttgtccatgtacttcttgagatctggaggc 434
Query: 465 tg 466
||
Sbjct: 435 tg 436
>gb|AV821803.1|AV821803 AV821803 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-16-J17 5',
mRNA sequence
Length = 576
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| || || || |||||||| || || || ||||| |||
Sbjct: 282 ctgtttcctctaatcaccaccatcccgatgtcggttttgtcgttaccgttcacctcaaca 223
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || ||||||||||| || || |||| |
Sbjct: 222 gtgttatccacaacaagattcatgaactgatcaaacccacgaagagttccagtaaccatt 163
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
||||| ||||| | ||| || || |||||||| |||||||||||||| ||||||||||||
Sbjct: 162 cggttagcattaagcttgatttggagcttcttatccatgtacttcttaagatccggaggc 103
Query: 465 tg 466
||
Sbjct: 102 tg 101
>gb|AV823925.1|AV823925 AV823925 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-10-G07 5',
mRNA sequence
Length = 569
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| ||||| || |||||||||| |||||||| || |||
Sbjct: 274 ctgtttcctcttatcaccaccatcccaatgtcagttttgtcatcaccattgacttcaaca 215
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || || ||||| || || || | ||| |
Sbjct: 214 gtgttatccacaacaagattcatgaactgatcaaagccacggagagttccaacaaccatt 155
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
| ||| ||||| | |||||| || || |||||||||||||||||||||||||| ||||||
Sbjct: 154 ctgttggcattaagcttaatttggagtttcttgtccatgtacttcttgagatctggaggc 95
Query: 465 tg 466
||
Sbjct: 94 tg 93
>gb|AV533918.1|AV533918 AV533918 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB070d02F 3', mRNA sequence
Length = 470
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Plus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| || || || |||||||| || || || ||||| |||
Sbjct: 228 ctgtttcctctaatcaccaccatcccgatgtcggttttgtcgttaccgttcacctcaaca 287
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || ||||||||||| || || |||| |
Sbjct: 288 gtgttatccacaacaagattcatgaactgatcaaacccacgaagagttccagtaaccatt 347
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
||||| ||||| | ||| || || |||||||| |||||||||||||| ||||||||||||
Sbjct: 348 cggttagcattaagcttgatttggagcttcttatccatgtacttcttaagatccggaggc 407
Query: 465 tg 466
||
Sbjct: 408 tg 409
>gb|AV534287.1|AV534287 AV534287 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB077f01F 3', mRNA sequence
Length = 463
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Plus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| || || || |||||||| || || || ||||| |||
Sbjct: 228 ctgtttcctctaatcaccaccatcccgatgtcggttttgtcgttaccgttcacctcaaca 287
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || ||||||||||| || || |||| |
Sbjct: 288 gtgttatccacaacaagattcatgaactgatcaaacccacgaagagttccagtaaccatt 347
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
||||| ||||| | ||| || || |||||||| |||||||||||||| ||||||||||||
Sbjct: 348 cggttagcattaagcttgatttggagcttcttatccatgtacttcttaagatccggaggc 407
Query: 465 tg 466
||
Sbjct: 408 tg 409
>gb|AV535171.1|AV535171 AV535171 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB092a09F 3', mRNA sequence
Length = 523
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Plus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| ||||| || |||||||||| |||||||| || |||
Sbjct: 257 ctgtttcctcttatcaccaccatcccaatgtcagttttgtcatcaccattgacttcaaca 316
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || || ||||| || || || | ||| |
Sbjct: 317 gtgttatccacaacaagattcatgaactgatcaaagccacggagagttccaacaaccatt 376
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
| ||| ||||| | |||||| || || |||||||||||||||||||||||||| ||||||
Sbjct: 377 ctgttggcattaagcttaatttggagtttcttgtccatgtacttcttgagatctggaggc 436
Query: 465 tg 466
||
Sbjct: 437 tg 438
>gb|AV535455.1|AV535455 AV535455 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB096f12F 3', mRNA sequence
Length = 506
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Plus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| ||||| || |||||||||| |||||||| || |||
Sbjct: 257 ctgtttcctcttatcaccaccatcccaatgtcagttttgtcatcaccattgacttcaaca 316
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || || ||||| || || || | ||| |
Sbjct: 317 gtgttatccacaacaagattcatgaactgatcaaagccacggagagttccaacaaccatt 376
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
| ||| ||||| | |||||| || || |||||||||||||||||||||||||| ||||||
Sbjct: 377 ctgttggcattaagcttaatttggagtttcttgtccatgtacttcttgagatctggaggc 436
Query: 465 tg 466
||
Sbjct: 437 tg 438
>gb|CK120023.1|CK120023 218p08.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011P08218
5-PRIME, mRNA sequence
Length = 486
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| || || || |||||||| || || || ||||| |||
Sbjct: 259 ctgtttcctctaatcaccaccatcccgatgtcggttttgtcgttaccgttcacctcaaca 200
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || ||||||||||| || || |||| |
Sbjct: 199 gtgttatccacaacaagattcatgaactgatcaaacccacgaagagttccagtaaccatt 140
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
||||| ||||| | ||| || || |||||||| |||||||||||||| ||||||||||||
Sbjct: 139 cggttagcattaagcttgatttggagcttcttatccatgtacttcttaagatccggaggc 80
Query: 465 tg 466
||
Sbjct: 79 tg 78
>gb|BP653691.1|BP653691 BP653691 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-14-O07 3',
mRNA sequence
Length = 404
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Plus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| ||||| || |||||||||| |||||||| || |||
Sbjct: 161 ctgtttcctcttatcaccaccatcccaatgtcagttttgtcatcaccattgacttcaaca 220
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || || ||||| || || || | ||| |
Sbjct: 221 gtgttatccacaacaagattcatgaactgatcaaagccacggagagttccaacaaccatt 280
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
| ||| ||||| | |||||| || || |||||||||||||||||||||||||| ||||||
Sbjct: 281 ctgttggcattaagcttaatttggagtttcttgtccatgtacttcttgagatctggaggc 340
Query: 465 tg 466
||
Sbjct: 341 tg 342
>gb|BP802121.1|BP802121 BP802121 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-23-A06 5',
mRNA sequence
Length = 359
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| ||||| || |||||||||| |||||||| || |||
Sbjct: 291 ctgtttcctcttatcaccaccatcccaatgtcagttttgtcatcaccattgacttcaaca 232
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || || ||||| || || || | ||| |
Sbjct: 231 gtgttatccacaacaagattcatgaactgatcaaagccacggagagttccaacaaccatt 172
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
| ||| ||||| | |||||| || || |||||||||||||||||||||||||| ||||||
Sbjct: 171 ctgttggcattaagcttaatttggagtttcttgtccatgtacttcttgagatctggaggc 112
Query: 465 tg 466
||
Sbjct: 111 tg 110
>gb|BP865594.1|BP865594 BP865594 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-74-M05 5',
mRNA sequence
Length = 371
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| ||||| || |||||||||| |||||||| || |||
Sbjct: 329 ctgtttcctcttatcaccaccatcccaatgtcagttttgtcatcaccattgacttcaaca 270
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || || ||||| || || || | ||| |
Sbjct: 269 gtgttatccacaacaagattcatgaactgatcaaagccacggagagttccaacaaccatt 210
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
| ||| ||||| | |||||| || || |||||||||||||||||||||||||| ||||||
Sbjct: 209 ctgttggcattaagcttaatttggagtttcttgtccatgtacttcttgagatctggaggc 150
Query: 465 tg 466
||
Sbjct: 149 tg 148
>gb|BP866681.1|BP866681 BP866681 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-78-I22 5',
mRNA sequence
Length = 391
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| ||||| || |||||||||| |||||||| || |||
Sbjct: 294 ctgtttcctcttatcaccaccatcccaatgtcagttttgtcatcaccattgacttcaaca 235
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || || ||||| || || || | ||| |
Sbjct: 234 gtgttatccacaacaagattcatgaactgatcaaagccacggagagttccaacaaccatt 175
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
| ||| ||||| | |||||| || || |||||||||||||||||||||||||| ||||||
Sbjct: 174 ctgttggcattaagcttaatttggagtttcttgtccatgtacttcttgagatctggaggc 115
Query: 465 tg 466
||
Sbjct: 114 tg 113
>gb|AY062818.1| Arabidopsis thaliana putative small nuclear ribonucleoprotein
polypeptide G (At3g11500; F24K9.17) mRNA, complete cds
Length = 530
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| ||||| || |||||||||| |||||||| || |||
Sbjct: 273 ctgtttcctcttatcaccaccatcccaatgtcagttttgtcatcaccattgacttcaaca 214
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || || ||||| || || || | ||| |
Sbjct: 213 gtgttatccacaacaagattcatgaactgatcaaagccacggagagttccaacaaccatt 154
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
| ||| ||||| | |||||| || || |||||||||||||||||||||||||| ||||||
Sbjct: 153 ctgttggcattaagcttaatttggagtttcttgtccatgtacttcttgagatctggaggc 94
Query: 465 tg 466
||
Sbjct: 93 tg 92
>gb|BT001203.1| Arabidopsis thaliana putative small nuclear ribonucleoprotein
polypeptide G (At3g11500) mRNA, complete cds
Length = 389
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| ||||| || |||||||||| |||||||| || |||
Sbjct: 197 ctgtttcctcttatcaccaccatcccaatgtcagttttgtcatcaccattgacttcaaca 138
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || || ||||| || || || | ||| |
Sbjct: 137 gtgttatccacaacaagattcatgaactgatcaaagccacggagagttccaacaaccatt 78
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
| ||| ||||| | |||||| || || |||||||||||||||||||||||||| ||||||
Sbjct: 77 ctgttggcattaagcttaatttggagtttcttgtccatgtacttcttgagatctggaggc 18
Query: 465 tg 466
||
Sbjct: 17 tg 16
>gb|BT002035.1| Arabidopsis thaliana putative small nuclear ribonucleoprotein E
(At2g23930) mRNA, complete cds
Length = 537
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| || || || |||||||| || || || ||||| |||
Sbjct: 281 ctgtttcctctaatcaccaccatcccgatgtcggttttgtcgttaccgttcacctcaaca 222
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || ||||||||||| || || |||| |
Sbjct: 221 gtgttatccacaacaagattcatgaactgatcaaacccacgaagagttccagtaaccatt 162
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
||||| ||||| | ||| || || |||||||| |||||||||||||| ||||||||||||
Sbjct: 161 cggttagcattaagcttgatttggagcttcttatccatgtacttcttaagatccggaggc 102
Query: 465 tg 466
||
Sbjct: 101 tg 100
>gb|BT006498.1| Arabidopsis thaliana At2g23930 gene, complete cds
Length = 243
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| || || || |||||||| || || || ||||| |||
Sbjct: 197 ctgtttcctctaatcaccaccatcccgatgtcggttttgtcgttaccgttcacctcaaca 138
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || ||||||||||| || || |||| |
Sbjct: 137 gtgttatccacaacaagattcatgaactgatcaaacccacgaagagttccagtaaccatt 78
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
||||| ||||| | ||| || || |||||||| |||||||||||||| ||||||||||||
Sbjct: 77 cggttagcattaagcttgatttggagcttcttatccatgtacttcttaagatccggaggc 18
Query: 465 tg 466
||
Sbjct: 17 tg 16
>emb|BX825320.1|CNS0A7PN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL29ZB11 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 557
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| ||||| || |||||||||| |||||||| || |||
Sbjct: 300 ctgtttcctcttatcaccaccatcccaatgtcagttttgtcatcaccattgacttcaaca 241
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || || ||||| || || || | ||| |
Sbjct: 240 gtgttatccacaacaagattcatgaactgatcaaagccacggagagttccaacaaccatt 181
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
| ||| ||||| | |||||| || || |||||||||||||||||||||||||| ||||||
Sbjct: 180 ctgttggcattaagcttaatttggagtttcttgtccatgtacttcttgagatctggaggc 121
Query: 465 tg 466
||
Sbjct: 120 tg 119
>emb|BX825656.1|CNS0A7P7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL54ZA08 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 468
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| ||||| || |||||||||| |||||||| || |||
Sbjct: 315 ctgtttcctcttatcaccaccatcccaatgtcagttttgtcatcaccattgacttcaaca 256
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || || ||||| || || || | ||| |
Sbjct: 255 gtgttatccacaacaagattcatgaactgatcaaagccacggagagttccaacaaccatt 196
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
| ||| ||||| | |||||| || || |||||||||||||||||||||||||| ||||||
Sbjct: 195 ctgttggcattaagcttaatttggagtttcttgtccatgtacttcttgagatctggaggc 136
Query: 465 tg 466
||
Sbjct: 135 tg 134
>emb|BX821884.1|CNS0AA5U Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL81ZG07 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 486
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| || || || |||||||| || || || ||||| |||
Sbjct: 261 ctgtttcctctaatcaccaccatcccgatgtcggttttgtcgttaccgttcacctcaaca 202
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || ||||||||||| || || |||| |
Sbjct: 201 gtgttatccacaacaagattcatgaactgatcaaacccacgaagagttccagtaaccatt 142
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
||||| ||||| | ||| || || |||||||| |||||||||||||| ||||||||||||
Sbjct: 141 cggttagcattaagcttgatttggagcttcttatccatgtacttcttaagatccggaggc 82
Query: 465 tg 466
||
Sbjct: 81 tg 80
>ref|NM_127954.1| Arabidopsis thaliana unknown protein AT2G23930 mRNA, complete cds
Length = 545
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| || || || |||||||| || || || ||||| |||
Sbjct: 285 ctgtttcctctaatcaccaccatcccgatgtcggttttgtcgttaccgttcacctcaaca 226
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || ||||||||||| || || |||| |
Sbjct: 225 gtgttatccacaacaagattcatgaactgatcaaacccacgaagagttccagtaaccatt 166
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
||||| ||||| | ||| || || |||||||| |||||||||||||| ||||||||||||
Sbjct: 165 cggttagcattaagcttgatttggagcttcttatccatgtacttcttaagatccggaggc 106
Query: 465 tg 466
||
Sbjct: 105 tg 104
>ref|NM_111983.4| Arabidopsis thaliana unknown protein AT3G11500 mRNA, complete cds
Length = 575
Score = 107 bits (54), Expect = 2e-021
Identities = 150/182 (82%)
Strand = Plus / Minus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| ||||| || |||||||||| |||||||| || |||
Sbjct: 315 ctgtttcctcttatcaccaccatcccaatgtcagttttgtcatcaccattgacttcaaca 256
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || || ||||| || || || | ||| |
Sbjct: 255 gtgttatccacaacaagattcatgaactgatcaaagccacggagagttccaacaaccatt 196
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
| ||| ||||| | |||||| || || |||||||||||||||||||||||||| ||||||
Sbjct: 195 ctgttggcattaagcttaatttggagtttcttgtccatgtacttcttgagatctggaggc 136
Query: 465 tg 466
||
Sbjct: 135 tg 134
>gb|AY088256.1| Arabidopsis thaliana clone 4850 mRNA, complete sequence
Length = 548
Score = 99.6 bits (50), Expect = 6e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| || || || |||||||| || || || ||||| |||
Sbjct: 288 ctgtttcctctaatcaccaccatcccgatgtcggttttgtcgttaccgttcacctcaaca 229
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || || |||||||| || || |||| |
Sbjct: 228 gtgttatccacaacaagattcatgaactgatcaaatccacgaagagttccagtaaccatt 169
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
||||| ||||| | ||| || || |||||||| |||||||||||||| ||||||||||||
Sbjct: 168 cggttagcattaagcttgatttggagcttcttatccatgtacttcttaagatccggaggc 109
Query: 465 tg 466
||
Sbjct: 108 tg 107
>emb|BX820713.1|CNS0AA7G Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH61ZH01 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 497
Score = 99.6 bits (50), Expect = 6e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| || || || |||||||| || || || ||||| |||
Sbjct: 259 ctgtttcctctaatcaccaccatcccgatgtcggttttgtcgttaccgttcacctcaaca 200
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || |||||||| || || || |||| |
Sbjct: 199 gtgttatccacaacaagattcatgaactgatcaaacccacggagagttccagtaaccatt 140
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggaggc 464
||||| ||||| | ||| || || |||||||| |||||||||||||| ||||||||||||
Sbjct: 139 cggttagcattaagcttgatttggagcttcttatccatgtacttcttaagatccggaggc 80
Query: 465 tg 466
||
Sbjct: 79 tg 78
>gb|BP859350.1|BP859350 BP859350 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-40-F24 5',
mRNA sequence
Length = 392
Score = 93.7 bits (47), Expect = 3e-017
Identities = 150/183 (81%), Gaps = 1/183 (0%)
Strand = Plus / Minus
Query: 285 ctgtttcccctgataaccaccattccaatatctg-ttttgtcatttccattgacctccac 343
|||||||| || || |||||||| ||||| || | ||||||||| |||||||| || ||
Sbjct: 274 ctgtttcctcttatcaccaccatcccaatgtcaggttttgtcatcaccattgacttcgac 215
Query: 344 agtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaac 403
|||||| ||||| || |||||||||||||| || || ||||| || || || | ||| |
Sbjct: 214 agtgttatccacaacaagattcatgaactgatcaaagccacggagagttccaacaaccat 155
Query: 404 acggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttgagatccggagg 463
| ||| ||||| | |||||| || || |||||||||||||||||||||||||| |||||
Sbjct: 154 tctgttggcattaagcttaatttggagtttcttgtccatgtacttcttgagatctggagg 95
Query: 464 ctg 466
|||
Sbjct: 94 ctg 92
>gb|AV532322.1|AV532322 AV532322 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB040b12F 3', mRNA sequence
Length = 412
Score = 71.9 bits (36), Expect = 1e-010
Identities = 87/104 (83%)
Strand = Plus / Plus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| || || || |||||||| || || || ||||| |||
Sbjct: 258 ctgtttcctctaatcaccaccatcccgatgtcggttttgtcgttaccgttcacctcaaca 317
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaag 388
||||| ||||| || |||||||||||||| || |||||||||||
Sbjct: 318 gtgttatccacaacaagattcatgaactgatcaaacccacgaag 361
>gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA7 similar to
small nuclear ribosomal protein E, mRNA sequence
Length = 263
Score = 69.9 bits (35), Expect = 5e-010
Identities = 130/162 (80%)
Strand = Plus / Plus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| | || || |||||||| || || || ||||| |||
Sbjct: 81 ctgtttcctctaatcaccaccatccntatgtcggttttgtcgttaccgttcacctcaaca 140
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtgccgataacaaca 404
||||| ||||| || |||||||||||||| || ||||||||||| || || |||| |
Sbjct: 141 gtgttatccacaacaagattcatgaactgatcaaacccacgaagagttccagtaaccatt 200
Query: 405 cggtttgcattcatcttaatctgaagcttcttgtccatgtac 446
||||| ||||| | ||| || || |||||||| |||||||||
Sbjct: 201 cggttagcattaagcttgatttggagcttcttatccatgtac 242
>gb|BH751094.1|BH751094 SALK_049355.49.00.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_049355.49.00.x,
DNA sequence
Length = 420
Score = 67.9 bits (34), Expect = 2e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 300 accaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccacc 359
|||||||| ||||| || |||||||||| |||||||| || |||||||| ||||| ||
Sbjct: 187 accaccatcccaatgtcagttttgtcatcaccattgacttcaacagtgttatccacaaca 128
Query: 360 agattcatgaactg 373
||||||||||||||
Sbjct: 127 agattcatgaactg 114
>gb|AC008153.5|AC008153 Arabidopsis thaliana chromosome 3 BAC F24K9 genomic sequence, complete
sequence
Length = 117296
Score = 67.9 bits (34), Expect = 2e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 300 accaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccacc 359
|||||||| ||||| || |||||||||| |||||||| || |||||||| ||||| ||
Sbjct: 64307 accaccatcccaatgtcagttttgtcatcaccattgacttcaacagtgttatccacaaca 64366
Query: 360 agattcatgaactg 373
||||||||||||||
Sbjct: 64367 agattcatgaactg 64380
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 67.9 bits (34), Expect = 2e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 300 accaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccacc 359
|||||||| ||||| || |||||||||| |||||||| || |||||||| ||||| ||
Sbjct: 3617752 accaccatcccaatgtcagttttgtcatcaccattgacttcaacagtgttatccacaaca 3617811
Query: 360 agattcatgaactg 373
||||||||||||||
Sbjct: 3617812 agattcatgaactg 3617825
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 67.9 bits (34), Expect = 2e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 300 accaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccacc 359
|||||||| ||||| || |||||||||| |||||||| || |||||||| ||||| ||
Sbjct: 3621778 accaccatcccaatgtcagttttgtcatcaccattgacttcaacagtgttatccacaaca 3621837
Query: 360 agattcatgaactg 373
||||||||||||||
Sbjct: 3621838 agattcatgaactg 3621851
>gb|B29014.1|B29014 T23O17TR TAMU Arabidopsis thaliana genomic clone T23O17, DNA
sequence
Length = 467
Score = 65.9 bits (33), Expect = 8e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 300 accaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccacc 359
|||||||| || || || |||||||| || || || ||||| |||||||| ||||| ||
Sbjct: 123 accaccatcccgatgtcggttttgtcgttaccgttcacctcaacagtgttatccacaaca 64
Query: 360 agattcatgaactggtcgaacccacgaag 388
|||||||||||||| || |||||||||||
Sbjct: 63 agattcatgaactgatcaaacccacgaag 35
>gb|B68003.1|B68003 T23O17TR.1 TAMU Arabidopsis thaliana genomic clone T23O17, DNA
sequence
Length = 544
Score = 65.9 bits (33), Expect = 8e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 300 accaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccacc 359
|||||||| || || || |||||||| || || || ||||| |||||||| ||||| ||
Sbjct: 123 accaccatcccgatgtcggttttgtcgttaccgttcacctcaacagtgttatccacaaca 64
Query: 360 agattcatgaactggtcgaacccacgaag 388
|||||||||||||| || |||||||||||
Sbjct: 63 agattcatgaactgatcaaacccacgaag 35
>gb|AA597812.1|AA597812 29879 Lambda-PRL2 Arabidopsis thaliana cDNA clone 244N10T7, mRNA
sequence
Length = 379
Score = 65.9 bits (33), Expect = 8e-009
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| || || || |||||||| || || || ||||| |||
Sbjct: 154 ctgtttcctctaatcaccaccatcccgatgtcggttttgtcgttaccgttcacctcaaca 95
Query: 345 gtgttgtccaccaccagattcatgaactggtcgaacccacgaag 388
||||| ||||| || |||||||||||||| | |||||||||||
Sbjct: 94 gtgttatccacaacaagattcatgaactgatnaaacccacgaag 51
>gb|AC005170.3| Arabidopsis thaliana chromosome 2 clone T29E15 map CIC06C07, complete
sequence
Length = 108056
Score = 65.9 bits (33), Expect = 8e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 300 accaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccacc 359
|||||||| || || || |||||||| || || || ||||| |||||||| ||||| ||
Sbjct: 45976 accaccatcccgatgtcggttttgtcgttaccgttcacctcaacagtgttatccacaaca 45917
Query: 360 agattcatgaactggtcgaacccacgaag 388
|||||||||||||| || |||||||||||
Sbjct: 45916 agattcatgaactgatcaaacccacgaag 45888
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 65.9 bits (33), Expect = 8e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 300 accaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccacc 359
|||||||| || || || |||||||| || || || ||||| |||||||| ||||| ||
Sbjct: 10189964 accaccatcccgatgtcggttttgtcgttaccgttcacctcaacagtgttatccacaaca 10189905
Query: 360 agattcatgaactggtcgaacccacgaag 388
|||||||||||||| || |||||||||||
Sbjct: 10189904 agattcatgaactgatcaaacccacgaag 10189876
>gb|BP671940.1|BP671940 BP671940 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-42-F17 3',
mRNA sequence
Length = 416
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 285 ctgtttcccctgataaccaccattccaatatctgttttgtcatttccattgacctccaca 344
|||||||| || || |||||||| || || || |||||||| || || || ||||| |||
Sbjct: 259 ctgtttcctctaatcaccaccatcccgatgtcggttttgtcgttaccgttcacctcaaca 318
Query: 345 gtgttgtccaccaccagattcatgaactg 373
||||| ||||| || ||||||||||||||
Sbjct: 319 gtgttatccacaacaagattcatgaactg 347
>emb|BX661189.1| Arabidopsis thaliana T-DNA flanking sequence GK-671F07-022932,
genomic survey sequence
Length = 108
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 599 gtacctcggccgcgaccacgcta 621
|||||||||||||||||||||||
Sbjct: 61 gtacctcggccgcgaccacgcta 39
>emb|BX662798.1| Arabidopsis thaliana T-DNA flanking sequence GK-708G03-022965,
genomic survey sequence
Length = 436
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 599 gtacctcggccgcgaccacgcta 621
|||||||||||||||||||||||
Sbjct: 61 gtacctcggccgcgaccacgcta 39
>emb|BX663297.1| Arabidopsis thaliana T-DNA flanking sequence GK-712B10-022963,
genomic survey sequence
Length = 498
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 599 gtacctcggccgcgaccacgcta 621
|||||||||||||||||||||||
Sbjct: 428 gtacctcggccgcgaccacgcta 450
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 599 gtacctcggccgcgaccacg 618
||||||||||||||||||||
Sbjct: 68 gtacctcggccgcgaccacg 49
>gb|CB185570.1|CB185570 EST000103 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-B11 similar to putative
UDP-glucose glucosyltransferase, mRNA sequence
Length = 548
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 599 gtacctcggccgcgaccacgcta 621
|||||||||||||||||||||||
Sbjct: 526 gtacctcggccgcgaccacgcta 548
>gb|CB185577.1|CB185577 EST000110 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA4-C7 similar to putative coatomer
complex subunit, has G-protein beta with WD-40 repeats,
mRNA sequence
Length = 489
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 599 gtacctcggccgcgaccacgcta 621
|||||||||||||||||||||||
Sbjct: 465 gtacctcggccgcgaccacgcta 487
>gb|CB185485.1|CB185485 EST00018 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-D1 similar to glucosyl
transferase, mRNA sequence
Length = 388
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 599 gtacctcggccgcgaccacgcta 621
|||||||||||||||||||||||
Sbjct: 365 gtacctcggccgcgaccacgcta 387
>gb|CB185533.1|CB185533 EST00066 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA2-G10 similar to putative
glutathione S-transferase, mRNA sequence
Length = 735
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 599 gtacctcggccgcgaccacgcta 621
|||||||||||||||||||||||
Sbjct: 64 gtacctcggccgcgaccacgcta 42
>gb|CB185851.1|CB185851 EST01042 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC3-D6 similar
to UDP-glucosyl transferase, mRNA sequence
Length = 414
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 599 gtacctcggccgcgaccacgcta 621
|||||||||||||||||||||||
Sbjct: 392 gtacctcggccgcgaccacgcta 414
>gb|BE845139.1|BE845139 AD07D05T7 AD A. thaliana (Col-0 gl1) subtracted library enriched
for salt-induced transcripts;10-14 day seedlings 4h
160mM NaCl stress Arabidopsis thaliana cDNA clone
AD07D05 similar to probable lipid transfer protein
T8F5.2, mRNA sequence
Length = 462
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 600 tacctcggccgcgaccacgcta 621
||||||||||||||||||||||
Sbjct: 417 tacctcggccgcgaccacgcta 438
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 600 tacctcggccgcgaccacgcta 621
||||||||||||||||||||||
Sbjct: 378 tacctcggccgcgaccacgcta 399
>gb|CB185474.1|CB185474 EST00007 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-A9 similar to transcription
factor ZAP1, mRNA sequence
Length = 460
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 600 tacctcggccgcgaccacgcta 621
||||||||||||||||||||||
Sbjct: 439 tacctcggccgcgaccacgcta 460
>gb|CB185495.1|CB185495 EST00028 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-E10 similar to NADH
dehygrogenase-like protein, mRNA sequence
Length = 979
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 600 tacctcggccgcgaccacgcta 621
||||||||||||||||||||||
Sbjct: 514 tacctcggccgcgaccacgcta 535
>gb|CB185508.1|CB185508 EST00041 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-G7 similar to putative Tub
family protein, mRNA sequence
Length = 378
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 600 tacctcggccgcgaccacgcta 621
||||||||||||||||||||||
Sbjct: 357 tacctcggccgcgaccacgcta 378
>gb|BE845176.1|BE845176 AD08A02T7 AD A. thaliana (Col-0 gl1) subtracted library enriched
for salt-induced transcripts;10-14 day seedlings 4h
160mM NaCl stress Arabidopsis thaliana cDNA clone
AD08A02 similar to peroxidase precursor, mRNA sequence
Length = 163
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 601 acctcggccgcgaccacgcta 621
|||||||||||||||||||||
Sbjct: 139 acctcggccgcgaccacgcta 159
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 281,691
Number of Sequences: 1013581
Number of extensions: 281691
Number of successful extensions: 20536
Number of sequences better than 0.5: 64
Number of HSP's better than 0.5 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20086
Number of HSP's gapped (non-prelim): 425
length of query: 621
length of database: 908,940,872
effective HSP length: 20
effective length of query: 601
effective length of database: 888,669,252
effective search space: 534090220452
effective search space used: 534090220452
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)