BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161238.2.2
(1186 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|H36655.1|H36655 14323 Lambda-PRL2 Arabidopsis thaliana c... 44 0.055
gb|CF652675.1|CF652675 70-L020135-066-001-K17-SP6P MPIZ-ADI... 44 0.055
gb|CF652676.1|CF652676 70-L020135w-066-001-K17-SP6P MPIZ-AD... 44 0.055
emb|AX412274.1| Sequence 38 from Patent WO0222675 44 0.055
emb|AX506624.1| Sequence 1319 from Patent WO0216655 44 0.055
emb|AX651351.1| Sequence 139 from Patent WO03000898 44 0.055
gb|BT009726.1| Arabidopsis thaliana At2g43590 gene, complet... 44 0.055
emb|BX820984.1|CNS0A9JX Arabidopsis thaliana Full-length cD... 44 0.055
ref|NM_129921.3| Arabidopsis thaliana chitin binding / chit... 44 0.055
>gb|H36655.1|H36655 14323 Lambda-PRL2 Arabidopsis thaliana cDNA clone 176J3T7, mRNA
sequence
Length = 384
Score = 44.1 bits (22), Expect = 0.055
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 487 cacgagaccgggcatttctgctacat 512
||||||||||| ||||||||||||||
Sbjct: 65 cacgagaccggacatttctgctacat 90
>gb|CF652675.1|CF652675 70-L020135-066-001-K17-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001K171Q 5-PRIME, mRNA sequence
Length = 514
Score = 44.1 bits (22), Expect = 0.055
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 487 cacgagaccgggcatttctgctacat 512
||||||||||| ||||||||||||||
Sbjct: 87 cacgagaccggacatttctgctacat 112
>gb|CF652676.1|CF652676 70-L020135w-066-001-K17-SP6P MPIZ-ADIS-066 Arabidopsis thaliana
cDNA clone MPIZp2001K171Q 5-PRIME, mRNA sequence
Length = 751
Score = 44.1 bits (22), Expect = 0.055
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 487 cacgagaccgggcatttctgctacat 512
||||||||||| ||||||||||||||
Sbjct: 87 cacgagaccggacatttctgctacat 112
>emb|AX412274.1| Sequence 38 from Patent WO0222675
Length = 795
Score = 44.1 bits (22), Expect = 0.055
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 487 cacgagaccgggcatttctgctacat 512
||||||||||| ||||||||||||||
Sbjct: 379 cacgagaccggacatttctgctacat 404
>emb|AX506624.1| Sequence 1319 from Patent WO0216655
Length = 795
Score = 44.1 bits (22), Expect = 0.055
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 487 cacgagaccgggcatttctgctacat 512
||||||||||| ||||||||||||||
Sbjct: 379 cacgagaccggacatttctgctacat 404
>emb|AX651351.1| Sequence 139 from Patent WO03000898
Length = 795
Score = 44.1 bits (22), Expect = 0.055
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 487 cacgagaccgggcatttctgctacat 512
||||||||||| ||||||||||||||
Sbjct: 379 cacgagaccggacatttctgctacat 404
>gb|BT009726.1| Arabidopsis thaliana At2g43590 gene, complete cds
Length = 795
Score = 44.1 bits (22), Expect = 0.055
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 487 cacgagaccgggcatttctgctacat 512
||||||||||| ||||||||||||||
Sbjct: 379 cacgagaccggacatttctgctacat 404
>emb|BX820984.1|CNS0A9JX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH89ZD02 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 956
Score = 44.1 bits (22), Expect = 0.055
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 487 cacgagaccgggcatttctgctacat 512
||||||||||| ||||||||||||||
Sbjct: 369 cacgagaccggacatttctgctacat 394
>ref|NM_129921.3| Arabidopsis thaliana chitin binding / chitinase AT2G43590 mRNA,
complete cds
Length = 1056
Score = 44.1 bits (22), Expect = 0.055
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 487 cacgagaccgggcatttctgctacat 512
||||||||||| ||||||||||||||
Sbjct: 379 cacgagaccggacatttctgctacat 404
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 266,570
Number of Sequences: 1013581
Number of extensions: 266570
Number of successful extensions: 19771
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19753
Number of HSP's gapped (non-prelim): 18
length of query: 1186
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1166
effective length of database: 888,669,252
effective search space: 1036188347832
effective search space used: 1036188347832
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)