BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161200.2.2
(1078 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW800642.1|CW800642 WiscDsLox329F10 Arabidopsis thaliana... 50 8e-004
gb|AV782845.1|AV782845 AV782845 RAFL5 Arabidopsis thaliana ... 50 8e-004
gb|AV544338.1|AV544338 AV544338 Arabidopsis thaliana roots ... 50 8e-004
gb|BP579398.1|BP579398 BP579398 RAFL14 Arabidopsis thaliana... 50 8e-004
gb|AF074092.1|AF074092 Arabidopsis thaliana cellulase (DEC)... 50 8e-004
gb|AF074375.1|AF074375 Arabidopsis thaliana cellulase (DEC)... 50 8e-004
gb|AF073875.1|AF073875 Arabidopsis thaliana endo-1,4-beta-D... 50 8e-004
gb|U37702.1|ATU37702 Arabidopsis thaliana cellulase (OR16pe... 50 8e-004
emb|A83259.1| Sequence 1 from Patent WO9850568 50 8e-004
gb|AY037218.1| Arabidopsis thaliana AT5g49720/K2I5_8 mRNA, ... 50 8e-004
dbj|E64634.1| Method for modifying plant cell wall component 50 8e-004
dbj|E64635.1| Method for modifying plant cell wall component 50 8e-004
gb|BT002221.1| Arabidopsis thaliana At5g49720/K2I5_8 mRNA, ... 50 8e-004
gb|AY086165.1| Arabidopsis thaliana clone 21922 mRNA, compl... 50 8e-004
dbj|AB025613.1| Arabidopsis thaliana genomic DNA, chromosom... 50 8e-004
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 50 8e-004
dbj|AK222193.1| Arabidopsis thaliana mRNA for cellulase hom... 50 8e-004
ref|NM_124350.2| Arabidopsis thaliana KOR1 (KORRIGAN); hydr... 50 8e-004
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 50 8e-004
gb|AQ011163.1|AQ011163 F21H18TFB IGF Arabidopsis thaliana g... 42 0.20
gb|BP566215.1|BP566215 BP566215 RAFL14 Arabidopsis thaliana... 42 0.20
gb|BP569115.1|BP569115 BP569115 RAFL14 Arabidopsis thaliana... 42 0.20
gb|BP578407.1|BP578407 BP578407 RAFL14 Arabidopsis thaliana... 42 0.20
dbj|AB028616.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.20
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 42 0.20
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 42 0.20
>gb|CW800642.1|CW800642 WiscDsLox329F10 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 817
Score = 50.1 bits (25), Expect = 8e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 539 gatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggtt 598
|||||||| | ||||||||||||||| || || ||||| |||| ||||||||||| ||
Sbjct: 414 gatgtccgtatgaactacaactacactgaaccgactcttgcaggcaatgctggtctagtc 473
Query: 599 gcagc 603
|||||
Sbjct: 474 gcagc 478
>gb|AV782845.1|AV782845 AV782845 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-02-G06 3',
mRNA sequence
Length = 693
Score = 50.1 bits (25), Expect = 8e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 539 gatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggtt 598
|||||||| | ||||||||||||||| || || ||||| |||| ||||||||||| ||
Sbjct: 507 gatgtccgtatgaactacaactacactgaaccgactcttgcaggcaatgctggtctagtc 448
Query: 599 gcagc 603
|||||
Sbjct: 447 gcagc 443
>gb|AV544338.1|AV544338 AV544338 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ40c09F 3', mRNA sequence
Length = 433
Score = 50.1 bits (25), Expect = 8e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 539 gatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggtt 598
|||||||| | ||||||||||||||| || || ||||| |||| ||||||||||| ||
Sbjct: 397 gatgtccgtatgaactacaactacactgaaccgactcttgcaggcaatgctggtctagtc 338
Query: 599 gcagc 603
|||||
Sbjct: 337 gcagc 333
>gb|BP579398.1|BP579398 BP579398 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-22-H04 3',
mRNA sequence
Length = 457
Score = 50.1 bits (25), Expect = 8e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 539 gatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggtt 598
|||||||| | ||||||||||||||| | || ||||| ||||| ||||||||||| ||
Sbjct: 443 gatgtccgtatgaactacaactacactggaccgactcttgcagccaatgctggtctagtc 384
Query: 599 gcagc 603
|||||
Sbjct: 383 gcagc 379
>gb|AF074092.1|AF074092 Arabidopsis thaliana cellulase (DEC) gene, complete cds
Length = 4033
Score = 50.1 bits (25), Expect = 8e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 539 gatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggtt 598
|||||||| | ||||||||||||||| || || ||||| |||| ||||||||||| ||
Sbjct: 3206 gatgtccgtatgaactacaactacactgaaccgactcttgcaggcaatgctggtctagtc 3265
Query: 599 gcagc 603
|||||
Sbjct: 3266 gcagc 3270
>gb|AF074375.1|AF074375 Arabidopsis thaliana cellulase (DEC) mRNA, complete cds
Length = 2179
Score = 50.1 bits (25), Expect = 8e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 539 gatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggtt 598
|||||||| | ||||||||||||||| || || ||||| |||| ||||||||||| ||
Sbjct: 1744 gatgtccgtatgaactacaactacactgaaccgactcttgcaggcaatgctggtctagtc 1803
Query: 599 gcagc 603
|||||
Sbjct: 1804 gcagc 1808
>gb|AF073875.1|AF073875 Arabidopsis thaliana endo-1,4-beta-D-glucanase KORRIGAN (KOR) gene,
KOR-1 allele, complete cds
Length = 2873
Score = 50.1 bits (25), Expect = 8e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 539 gatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggtt 598
|||||||| | ||||||||||||||| || || ||||| |||| ||||||||||| ||
Sbjct: 2367 gatgtccgtatgaactacaactacactgaaccgactcttgcaggcaatgctggtctagtc 2426
Query: 599 gcagc 603
|||||
Sbjct: 2427 gcagc 2431
>gb|U37702.1|ATU37702 Arabidopsis thaliana cellulase (OR16pep) mRNA, complete cds
Length = 2257
Score = 50.1 bits (25), Expect = 8e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 539 gatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggtt 598
|||||||| | ||||||||||||||| || || ||||| |||| ||||||||||| ||
Sbjct: 1751 gatgtccgtatgaactacaactacactgaaccgactcttgcaggcaatgctggtctagtc 1810
Query: 599 gcagc 603
|||||
Sbjct: 1811 gcagc 1815
>emb|A83259.1| Sequence 1 from Patent WO9850568
Length = 2257
Score = 50.1 bits (25), Expect = 8e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 539 gatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggtt 598
|||||||| | ||||||||||||||| || || ||||| |||| ||||||||||| ||
Sbjct: 1751 gatgtccgtatgaactacaactacactgaaccgactcttgcaggcaatgctggtctagtc 1810
Query: 599 gcagc 603
|||||
Sbjct: 1811 gcagc 1815
>gb|AY037218.1| Arabidopsis thaliana AT5g49720/K2I5_8 mRNA, complete cds
Length = 2307
Score = 50.1 bits (25), Expect = 8e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 539 gatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggtt 598
|||||||| | ||||||||||||||| || || ||||| |||| ||||||||||| ||
Sbjct: 1801 gatgtccgtatgaactacaactacactgaaccgactcttgcaggcaatgctggtctagtc 1860
Query: 599 gcagc 603
|||||
Sbjct: 1861 gcagc 1865
>dbj|E64634.1| Method for modifying plant cell wall component
Length = 2257
Score = 50.1 bits (25), Expect = 8e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 539 gatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggtt 598
|||||||| | ||||||||||||||| || || ||||| |||| ||||||||||| ||
Sbjct: 1751 gatgtccgtatgaactacaactacactgaaccgactcttgcaggcaatgctggtctagtc 1810
Query: 599 gcagc 603
|||||
Sbjct: 1811 gcagc 1815
>dbj|E64635.1| Method for modifying plant cell wall component
Length = 12319
Score = 50.1 bits (25), Expect = 8e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 539 gatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggtt 598
|||||||| | ||||||||||||||| || || ||||| |||| ||||||||||| ||
Sbjct: 5665 gatgtccgtatgaactacaactacactgaaccgactcttgcaggcaatgctggtctagtc 5724
Query: 599 gcagc 603
|||||
Sbjct: 5725 gcagc 5729
>gb|BT002221.1| Arabidopsis thaliana At5g49720/K2I5_8 mRNA, complete cds
Length = 1866
Score = 50.1 bits (25), Expect = 8e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 539 gatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggtt 598
|||||||| | ||||||||||||||| || || ||||| |||| ||||||||||| ||
Sbjct: 1681 gatgtccgtatgaactacaactacactgaaccgactcttgcaggcaatgctggtctagtc 1740
Query: 599 gcagc 603
|||||
Sbjct: 1741 gcagc 1745
>gb|AY086165.1| Arabidopsis thaliana clone 21922 mRNA, complete sequence
Length = 2303
Score = 50.1 bits (25), Expect = 8e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 539 gatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggtt 598
|||||||| | ||||||||||||||| || || ||||| |||| ||||||||||| ||
Sbjct: 1801 gatgtccgtatgaactacaactacactgaaccgactcttgcaggcaatgctggtctagtc 1860
Query: 599 gcagc 603
|||||
Sbjct: 1861 gcagc 1865
>dbj|AB025613.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2I5
Length = 71807
Score = 50.1 bits (25), Expect = 8e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 539 gatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggtt 598
|||||||| | ||||||||||||||| || || ||||| |||| ||||||||||| ||
Sbjct: 34955 gatgtccgtatgaactacaactacactgaaccgactcttgcaggcaatgctggtctagtc 34896
Query: 599 gcagc 603
|||||
Sbjct: 34895 gcagc 34891
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 50.1 bits (25), Expect = 8e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 539 gatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggtt 598
|||||||| | ||||||||||||||| || || ||||| |||| ||||||||||| ||
Sbjct: 18198077 gatgtccgtatgaactacaactacactgaaccgactcttgcaggcaatgctggtctagtc 18198018
Query: 599 gcagc 603
|||||
Sbjct: 18198017 gcagc 18198013
>dbj|AK222193.1| Arabidopsis thaliana mRNA for cellulase homolog OR16pep precursor,
partial cds, clone: RAFL24-21-F09
Length = 1102
Score = 50.1 bits (25), Expect = 8e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 539 gatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggtt 598
|||||||| | ||||||||||||||| || || ||||| |||| ||||||||||| ||
Sbjct: 587 gatgtccgtatgaactacaactacactgaaccgactcttgcaggcaatgctggtctagtc 646
Query: 599 gcagc 603
|||||
Sbjct: 647 gcagc 651
>ref|NM_124350.2| Arabidopsis thaliana KOR1 (KORRIGAN); hydrolase, hydrolyzing
O-glycosyl compounds AT5G49720 (KOR1) mRNA, complete cds
Length = 2360
Score = 50.1 bits (25), Expect = 8e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 539 gatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggtt 598
|||||||| | ||||||||||||||| || || ||||| |||| ||||||||||| ||
Sbjct: 1801 gatgtccgtatgaactacaactacactgaaccgactcttgcaggcaatgctggtctagtc 1860
Query: 599 gcagc 603
|||||
Sbjct: 1861 gcagc 1865
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 50.1 bits (25), Expect = 8e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 539 gatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggtt 598
|||||||| | ||||||||||||||| || || ||||| |||| ||||||||||| ||
Sbjct: 20215176 gatgtccgtatgaactacaactacactgaaccgactcttgcaggcaatgctggtctagtc 20215117
Query: 599 gcagc 603
|||||
Sbjct: 20215116 gcagc 20215112
>gb|AQ011163.1|AQ011163 F21H18TFB IGF Arabidopsis thaliana genomic clone F21H18, DNA sequence
Length = 300
Score = 42.1 bits (21), Expect = 0.20
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 999 tttacaaattgttttatagaa 1019
|||||||||||||||||||||
Sbjct: 273 tttacaaattgttttatagaa 293
>gb|BP566215.1|BP566215 BP566215 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-52-P07 3',
mRNA sequence
Length = 464
Score = 42.1 bits (21), Expect = 0.20
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 539 gatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggtt 598
|||||||| | ||||||||||||||| | || ||||| |||| ||||||||||| ||
Sbjct: 462 gatgtccgtatgaactacaactacactggaccgactcttgcaggcaatgctggtctagtc 403
Query: 599 gcagc 603
|||||
Sbjct: 402 gcagc 398
>gb|BP569115.1|BP569115 BP569115 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-65-K03 3',
mRNA sequence
Length = 449
Score = 42.1 bits (21), Expect = 0.20
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 539 gatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggtt 598
|||||||| | ||||||||||||||| | || ||||| |||| ||||||||||| ||
Sbjct: 442 gatgtccgtatgaactacaactacactggaccgactcttgcaggcaatgctggtctagtc 383
Query: 599 gcagc 603
|||||
Sbjct: 382 gcagc 378
>gb|BP578407.1|BP578407 BP578407 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-18-A14 3',
mRNA sequence
Length = 443
Score = 42.1 bits (21), Expect = 0.20
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 539 gatgtccgcacgaactacaactacacggagcctactctcgcagcgaatgctggtctggtt 598
|||||||| | ||||||||||||||| | || ||||| |||| ||||||||||| ||
Sbjct: 442 gatgtccgtatgaactacaactacactggaccgactcttgcaggcaatgctggtctagtc 383
Query: 599 gcagc 603
|||||
Sbjct: 382 gcagc 378
>dbj|AB028616.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MMG15
Length = 86139
Score = 42.1 bits (21), Expect = 0.20
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 999 tttacaaattgttttatagaa 1019
|||||||||||||||||||||
Sbjct: 18276 tttacaaattgttttatagaa 18256
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 42.1 bits (21), Expect = 0.20
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 999 tttacaaattgttttatagaa 1019
|||||||||||||||||||||
Sbjct: 10345192 tttacaaattgttttatagaa 10345172
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 42.1 bits (21), Expect = 0.20
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 999 tttacaaattgttttatagaa 1019
|||||||||||||||||||||
Sbjct: 10418866 tttacaaattgttttatagaa 10418846
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 492,609
Number of Sequences: 1013581
Number of extensions: 492609
Number of successful extensions: 35067
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34291
Number of HSP's gapped (non-prelim): 776
length of query: 1078
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1058
effective length of database: 888,669,252
effective search space: 940212068616
effective search space used: 940212068616
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)