BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161200.2.1
(845 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV782845.1|AV782845 AV782845 RAFL5 Arabidopsis thaliana ... 50 6e-004
gb|CK119494.1|CK119494 212c03.p1 AtM1 Arabidopsis thaliana ... 50 6e-004
gb|AF074092.1|AF074092 Arabidopsis thaliana cellulase (DEC)... 50 6e-004
gb|AF074375.1|AF074375 Arabidopsis thaliana cellulase (DEC)... 50 6e-004
gb|AF073875.1|AF073875 Arabidopsis thaliana endo-1,4-beta-D... 50 6e-004
gb|U37702.1|ATU37702 Arabidopsis thaliana cellulase (OR16pe... 50 6e-004
emb|A83259.1| Sequence 1 from Patent WO9850568 50 6e-004
gb|AY037218.1| Arabidopsis thaliana AT5g49720/K2I5_8 mRNA, ... 50 6e-004
dbj|E64634.1| Method for modifying plant cell wall component 50 6e-004
dbj|E64635.1| Method for modifying plant cell wall component 50 6e-004
gb|BT002221.1| Arabidopsis thaliana At5g49720/K2I5_8 mRNA, ... 50 6e-004
gb|AY086165.1| Arabidopsis thaliana clone 21922 mRNA, compl... 50 6e-004
dbj|AB025613.1| Arabidopsis thaliana genomic DNA, chromosom... 50 6e-004
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 50 6e-004
dbj|AK222193.1| Arabidopsis thaliana mRNA for cellulase hom... 50 6e-004
ref|NM_124350.2| Arabidopsis thaliana KOR1 (KORRIGAN); hydr... 50 6e-004
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 50 6e-004
gb|CW800642.1|CW800642 WiscDsLox329F10 Arabidopsis thaliana... 44 0.039
>gb|AV782845.1|AV782845 AV782845 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-02-G06 3',
mRNA sequence
Length = 693
Score = 50.1 bits (25), Expect = 6e-004
Identities = 100/125 (80%)
Strand = Plus / Plus
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
||||||||||||||| | |||||||| ||| ||||| ||| ||||||| ||||| |||
Sbjct: 482 gtgtagttgtagttcatacggacatcacggtacccgtcgcgcttgtcaggaccagcaacc 541
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
|| ||||| ||| |||| ||||||| ||||| |||| |||||||| | ||||||
Sbjct: 542 atggctccttcaatcgtgtttgggtttggtttcttgctgtctctccatttccatcctcct 601
Query: 639 ttgca 643
|||||
Sbjct: 602 ttgca 606
>gb|CK119494.1|CK119494 212c03.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011C03212
5-PRIME, mRNA sequence
Length = 772
Score = 50.1 bits (25), Expect = 6e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
||||||||||||||| | |||||||| ||| ||||| ||| ||||||| ||||| |||
Sbjct: 748 gtgtagttgtagttcatacggacatcacggtacccgtcgcgcttgtcaggaccagcaacc 689
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
|| ||||| ||| |||| ||||||| ||||| |||| |||||||| | ||||||
Sbjct: 688 atggctccttcaatcgtgtttgggtttggtttcttgctgtctctccatttccatcctcct 629
Query: 639 ttgca 643
|||||
Sbjct: 628 ttgca 624
>gb|AF074092.1|AF074092 Arabidopsis thaliana cellulase (DEC) gene, complete cds
Length = 4033
Score = 50.1 bits (25), Expect = 6e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
||||||||||||||| | |||||||| ||| ||||| ||| ||||||| ||||| |||
Sbjct: 3231 gtgtagttgtagttcatacggacatcacggtacccgtcgcgcttgtcaggaccagcaacc 3172
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
|| ||||| ||| |||| ||||||| ||||| |||| |||||||| | ||||||
Sbjct: 3171 atggctccttcaatcgtgtttgggtttggtttcttgctgtctctccatttccatcctcct 3112
Query: 639 ttgca 643
|||||
Sbjct: 3111 ttgca 3107
>gb|AF074375.1|AF074375 Arabidopsis thaliana cellulase (DEC) mRNA, complete cds
Length = 2179
Score = 50.1 bits (25), Expect = 6e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
||||||||||||||| | |||||||| ||| ||||| ||| ||||||| ||||| |||
Sbjct: 1769 gtgtagttgtagttcatacggacatcacggtacccgtcgcgcttgtcaggaccagcaacc 1710
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
|| ||||| ||| |||| ||||||| ||||| |||| |||||||| | ||||||
Sbjct: 1709 atggctccttcaatcgtgtttgggtttggtttcttgctgtctctccatttccatcctcct 1650
Query: 639 ttgca 643
|||||
Sbjct: 1649 ttgca 1645
>gb|AF073875.1|AF073875 Arabidopsis thaliana endo-1,4-beta-D-glucanase KORRIGAN (KOR) gene,
KOR-1 allele, complete cds
Length = 2873
Score = 50.1 bits (25), Expect = 6e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
||||||||||||||| | |||||||| ||| ||||| ||| ||||||| ||||| |||
Sbjct: 2392 gtgtagttgtagttcatacggacatcacggtacccgtcgcgcttgtcaggaccagcaacc 2333
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
|| ||||| ||| |||| ||||||| ||||| |||| |||||||| | ||||||
Sbjct: 2332 atggctccttcaatcgtgtttgggtttggtttcttgctgtctctccatttccatcctcct 2273
Query: 639 ttgca 643
|||||
Sbjct: 2272 ttgca 2268
>gb|U37702.1|ATU37702 Arabidopsis thaliana cellulase (OR16pep) mRNA, complete cds
Length = 2257
Score = 50.1 bits (25), Expect = 6e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
||||||||||||||| | |||||||| ||| ||||| ||| ||||||| ||||| |||
Sbjct: 1776 gtgtagttgtagttcatacggacatcacggtacccgtcgcgcttgtcaggaccagcaacc 1717
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
|| ||||| ||| |||| ||||||| ||||| |||| |||||||| | ||||||
Sbjct: 1716 atggctccttcaatcgtgtttgggtttggtttcttgctgtctctccatttccatcctcct 1657
Query: 639 ttgca 643
|||||
Sbjct: 1656 ttgca 1652
>emb|A83259.1| Sequence 1 from Patent WO9850568
Length = 2257
Score = 50.1 bits (25), Expect = 6e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
||||||||||||||| | |||||||| ||| ||||| ||| ||||||| ||||| |||
Sbjct: 1776 gtgtagttgtagttcatacggacatcacggtacccgtcgcgcttgtcaggaccagcaacc 1717
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
|| ||||| ||| |||| ||||||| ||||| |||| |||||||| | ||||||
Sbjct: 1716 atggctccttcaatcgtgtttgggtttggtttcttgctgtctctccatttccatcctcct 1657
Query: 639 ttgca 643
|||||
Sbjct: 1656 ttgca 1652
>gb|AY037218.1| Arabidopsis thaliana AT5g49720/K2I5_8 mRNA, complete cds
Length = 2307
Score = 50.1 bits (25), Expect = 6e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
||||||||||||||| | |||||||| ||| ||||| ||| ||||||| ||||| |||
Sbjct: 1826 gtgtagttgtagttcatacggacatcacggtacccgtcgcgcttgtcaggaccagcaacc 1767
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
|| ||||| ||| |||| ||||||| ||||| |||| |||||||| | ||||||
Sbjct: 1766 atggctccttcaatcgtgtttgggtttggtttcttgctgtctctccatttccatcctcct 1707
Query: 639 ttgca 643
|||||
Sbjct: 1706 ttgca 1702
>dbj|E64634.1| Method for modifying plant cell wall component
Length = 2257
Score = 50.1 bits (25), Expect = 6e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
||||||||||||||| | |||||||| ||| ||||| ||| ||||||| ||||| |||
Sbjct: 1776 gtgtagttgtagttcatacggacatcacggtacccgtcgcgcttgtcaggaccagcaacc 1717
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
|| ||||| ||| |||| ||||||| ||||| |||| |||||||| | ||||||
Sbjct: 1716 atggctccttcaatcgtgtttgggtttggtttcttgctgtctctccatttccatcctcct 1657
Query: 639 ttgca 643
|||||
Sbjct: 1656 ttgca 1652
>dbj|E64635.1| Method for modifying plant cell wall component
Length = 12319
Score = 50.1 bits (25), Expect = 6e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
||||||||||||||| | |||||||| ||| ||||| ||| ||||||| ||||| |||
Sbjct: 5690 gtgtagttgtagttcatacggacatcacggtacccgtcgcgcttgtcaggaccagcaacc 5631
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
|| ||||| ||| |||| ||||||| ||||| |||| |||||||| | ||||||
Sbjct: 5630 atggctccttcaatcgtgtttgggtttggtttcttgctgtctctccatttccatcctcct 5571
Query: 639 ttgca 643
|||||
Sbjct: 5570 ttgca 5566
>gb|BT002221.1| Arabidopsis thaliana At5g49720/K2I5_8 mRNA, complete cds
Length = 1866
Score = 50.1 bits (25), Expect = 6e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
||||||||||||||| | |||||||| ||| ||||| ||| ||||||| ||||| |||
Sbjct: 1706 gtgtagttgtagttcatacggacatcacggtacccgtcgcgcttgtcaggaccagcaacc 1647
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
|| ||||| ||| |||| ||||||| ||||| |||| |||||||| | ||||||
Sbjct: 1646 atggctccttcaatcgtgtttgggtttggtttcttgctgtctctccatttccatcctcct 1587
Query: 639 ttgca 643
|||||
Sbjct: 1586 ttgca 1582
>gb|AY086165.1| Arabidopsis thaliana clone 21922 mRNA, complete sequence
Length = 2303
Score = 50.1 bits (25), Expect = 6e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
||||||||||||||| | |||||||| ||| ||||| ||| ||||||| ||||| |||
Sbjct: 1826 gtgtagttgtagttcatacggacatcacggtacccgtcgcgcttgtcaggaccagcaacc 1767
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
|| ||||| ||| |||| ||||||| ||||| |||| |||||||| | ||||||
Sbjct: 1766 atggctccttcaatcgtgtttgggtttggtttcttgctgtctctccatttccatcctcct 1707
Query: 639 ttgca 643
|||||
Sbjct: 1706 ttgca 1702
>dbj|AB025613.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2I5
Length = 71807
Score = 50.1 bits (25), Expect = 6e-004
Identities = 100/125 (80%)
Strand = Plus / Plus
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
||||||||||||||| | |||||||| ||| ||||| ||| ||||||| ||||| |||
Sbjct: 34930 gtgtagttgtagttcatacggacatcacggtacccgtcgcgcttgtcaggaccagcaacc 34989
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
|| ||||| ||| |||| ||||||| ||||| |||| |||||||| | ||||||
Sbjct: 34990 atggctccttcaatcgtgtttgggtttggtttcttgctgtctctccatttccatcctcct 35049
Query: 639 ttgca 643
|||||
Sbjct: 35050 ttgca 35054
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 50.1 bits (25), Expect = 6e-004
Identities = 100/125 (80%)
Strand = Plus / Plus
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
||||||||||||||| | |||||||| ||| ||||| ||| ||||||| ||||| |||
Sbjct: 18198052 gtgtagttgtagttcatacggacatcacggtacccgtcgcgcttgtcaggaccagcaacc 18198111
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
|| ||||| ||| |||| ||||||| ||||| |||| |||||||| | ||||||
Sbjct: 18198112 atggctccttcaatcgtgtttgggtttggtttcttgctgtctctccatttccatcctcct 18198171
Query: 639 ttgca 643
|||||
Sbjct: 18198172 ttgca 18198176
>dbj|AK222193.1| Arabidopsis thaliana mRNA for cellulase homolog OR16pep precursor,
partial cds, clone: RAFL24-21-F09
Length = 1102
Score = 50.1 bits (25), Expect = 6e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
||||||||||||||| | |||||||| ||| ||||| ||| ||||||| ||||| |||
Sbjct: 612 gtgtagttgtagttcatacggacatcacggtacccgtcgcgcttgtcaggaccagcaacc 553
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
|| ||||| ||| |||| ||||||| ||||| |||| |||||||| | ||||||
Sbjct: 552 atggctccttcaatcgtgtttgggtttggtttcttgctgtctctccatttccatcctcct 493
Query: 639 ttgca 643
|||||
Sbjct: 492 ttgca 488
>ref|NM_124350.2| Arabidopsis thaliana KOR1 (KORRIGAN); hydrolase, hydrolyzing
O-glycosyl compounds AT5G49720 (KOR1) mRNA, complete cds
Length = 2360
Score = 50.1 bits (25), Expect = 6e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
||||||||||||||| | |||||||| ||| ||||| ||| ||||||| ||||| |||
Sbjct: 1826 gtgtagttgtagttcatacggacatcacggtacccgtcgcgcttgtcaggaccagcaacc 1767
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
|| ||||| ||| |||| ||||||| ||||| |||| |||||||| | ||||||
Sbjct: 1766 atggctccttcaatcgtgtttgggtttggtttcttgctgtctctccatttccatcctcct 1707
Query: 639 ttgca 643
|||||
Sbjct: 1706 ttgca 1702
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 50.1 bits (25), Expect = 6e-004
Identities = 100/125 (80%)
Strand = Plus / Plus
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
||||||||||||||| | |||||||| ||| ||||| ||| ||||||| ||||| |||
Sbjct: 20215151 gtgtagttgtagttcatacggacatcacggtacccgtcgcgcttgtcaggaccagcaacc 20215210
Query: 579 attgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcct 638
|| ||||| ||| |||| ||||||| ||||| |||| |||||||| | ||||||
Sbjct: 20215211 atggctccttcaatcgtgtttgggtttggtttcttgctgtctctccatttccatcctcct 20215270
Query: 639 ttgca 643
|||||
Sbjct: 20215271 ttgca 20215275
>gb|CW800642.1|CW800642 WiscDsLox329F10 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 817
Score = 44.1 bits (22), Expect = 0.039
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 519 gtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccacc 578
||||||||||||||| | |||||||| ||| ||||| ||| ||||||| ||||| |||
Sbjct: 439 gtgtagttgtagttcatacggacatcacggtacccgtcgcgcttgtcaggaccagcaacc 380
Query: 579 at 580
||
Sbjct: 379 at 378
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 375,474
Number of Sequences: 1013581
Number of extensions: 375474
Number of successful extensions: 29794
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29445
Number of HSP's gapped (non-prelim): 332
length of query: 845
length of database: 908,940,872
effective HSP length: 20
effective length of query: 825
effective length of database: 888,669,252
effective search space: 733152132900
effective search space used: 733152132900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)