BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161072.2.3
(885 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY086058.1| Arabidopsis thaliana clone 20900 mRNA, compl... 44 0.041
gb|B20531.1|B20531 F6F15-Sp6 IGF Arabidopsis thaliana genom... 42 0.16
gb|AQ960142.1|AQ960142 LERFA01TR LERA Arabidopsis thaliana ... 42 0.16
gb|CL482469.1|CL482469 SAIL_360_G10.v1 SAIL Collection Arab... 42 0.16
gb|CL492214.1|CL492214 SAIL_564_E05.v1 SAIL Collection Arab... 42 0.16
gb|CW839406.1|CW839406 GT8277.Ds3.11.07.2002.jw72.780 Arabi... 42 0.16
gb|AV826880.1|AV826880 AV826880 RAFL9 Arabidopsis thaliana ... 42 0.16
gb|AY058835.1| Arabidopsis thaliana AT5g10910/T30N20_180 mR... 42 0.16
gb|BT004524.1| Arabidopsis thaliana At5g10910/T30N20_180 ge... 42 0.16
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 42 0.16
emb|AL365234.1|ATT30N20 Arabidopsis thaliana DNA chromosome... 42 0.16
emb|AL137189.2|ATF7J8 Arabidopsis thaliana DNA chromosome 5... 42 0.16
ref|NM_121129.3| Arabidopsis thaliana methyltransferase AT5... 42 0.16
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 42 0.16
>gb|AY086058.1| Arabidopsis thaliana clone 20900 mRNA, complete sequence
Length = 1395
Score = 44.1 bits (22), Expect = 0.041
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 594 gaggagaagaggaagaggagga 615
||||||||||||||||||||||
Sbjct: 79 gaggagaagaggaagaggagga 58
>gb|B20531.1|B20531 F6F15-Sp6 IGF Arabidopsis thaliana genomic clone F6F15, DNA
sequence
Length = 739
Score = 42.1 bits (21), Expect = 0.16
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 590 ggaggaggagaagaggaagag 610
|||||||||||||||||||||
Sbjct: 645 ggaggaggagaagaggaagag 625
>gb|AQ960142.1|AQ960142 LERFA01TR LERA Arabidopsis thaliana genomic clone LERFA01, DNA
sequence
Length = 597
Score = 42.1 bits (21), Expect = 0.16
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 614 gaaaatacatgaaaaataaaa 634
|||||||||||||||||||||
Sbjct: 254 gaaaatacatgaaaaataaaa 274
>gb|CL482469.1|CL482469 SAIL_360_G10.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_360_G10.v1, DNA sequence
Length = 989
Score = 42.1 bits (21), Expect = 0.16
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 590 ggaggaggagaagaggaagaggagg 614
|||| ||||||||||||||||||||
Sbjct: 425 ggagaaggagaagaggaagaggagg 449
>gb|CL492214.1|CL492214 SAIL_564_E05.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_564_E05.v1, DNA sequence
Length = 969
Score = 42.1 bits (21), Expect = 0.16
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 597 gagaagaggaagaggaggaaa 617
|||||||||||||||||||||
Sbjct: 680 gagaagaggaagaggaggaaa 660
>gb|CW839406.1|CW839406 GT8277.Ds3.11.07.2002.jw72.780 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT8277, DNA sequence
Length = 776
Score = 42.1 bits (21), Expect = 0.16
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 597 gagaagaggaagaggaggaaa 617
|||||||||||||||||||||
Sbjct: 507 gagaagaggaagaggaggaaa 527
>gb|AV826880.1|AV826880 AV826880 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-09-D12 5',
mRNA sequence
Length = 473
Score = 42.1 bits (21), Expect = 0.16
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 597 gagaagaggaagaggaggaaa 617
|||||||||||||||||||||
Sbjct: 188 gagaagaggaagaggaggaaa 208
>gb|AY058835.1| Arabidopsis thaliana AT5g10910/T30N20_180 mRNA, complete cds
Length = 1375
Score = 42.1 bits (21), Expect = 0.16
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 597 gagaagaggaagaggaggaaa 617
|||||||||||||||||||||
Sbjct: 188 gagaagaggaagaggaggaaa 208
>gb|BT004524.1| Arabidopsis thaliana At5g10910/T30N20_180 gene, complete cds
Length = 1305
Score = 42.1 bits (21), Expect = 0.16
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 597 gagaagaggaagaggaggaaa 617
|||||||||||||||||||||
Sbjct: 151 gagaagaggaagaggaggaaa 171
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 42.1 bits (21), Expect = 0.16
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 597 gagaagaggaagaggaggaaa 617
|||||||||||||||||||||
Sbjct: 3252708 gagaagaggaagaggaggaaa 3252728
Score = 42.1 bits (21), Expect = 0.16
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 614 gaaaatacatgaaaaataaaa 634
|||||||||||||||||||||
Sbjct: 79627 gaaaatacatgaaaaataaaa 79647
>emb|AL365234.1|ATT30N20 Arabidopsis thaliana DNA chromosome 5, BAC clone T30N20 (ESSA project)
Length = 98473
Score = 42.1 bits (21), Expect = 0.16
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 597 gagaagaggaagaggaggaaa 617
|||||||||||||||||||||
Sbjct: 47366 gagaagaggaagaggaggaaa 47386
>emb|AL137189.2|ATF7J8 Arabidopsis thaliana DNA chromosome 5, BAC clone F7J8 (ESSA project)
Length = 118507
Score = 42.1 bits (21), Expect = 0.16
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 614 gaaaatacatgaaaaataaaa 634
|||||||||||||||||||||
Sbjct: 75488 gaaaatacatgaaaaataaaa 75508
>ref|NM_121129.3| Arabidopsis thaliana methyltransferase AT5G10910 mRNA, complete cds
Length = 1405
Score = 42.1 bits (21), Expect = 0.16
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 597 gagaagaggaagaggaggaaa 617
|||||||||||||||||||||
Sbjct: 186 gagaagaggaagaggaggaaa 206
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 42.1 bits (21), Expect = 0.16
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 597 gagaagaggaagaggaggaaa 617
|||||||||||||||||||||
Sbjct: 3439739 gagaagaggaagaggaggaaa 3439759
Score = 42.1 bits (21), Expect = 0.16
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 614 gaaaatacatgaaaaataaaa 634
|||||||||||||||||||||
Sbjct: 80070 gaaaatacatgaaaaataaaa 80090
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 472,274
Number of Sequences: 1013581
Number of extensions: 472274
Number of successful extensions: 46504
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45985
Number of HSP's gapped (non-prelim): 519
length of query: 885
length of database: 908,940,872
effective HSP length: 20
effective length of query: 865
effective length of database: 888,669,252
effective search space: 768698902980
effective search space used: 768698902980
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)