BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2161072.2.1
         (1197 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CL497539.1|CL497539  SAIL_642_D06.v1 SAIL Collection Arab...    46   0.014
gb|CL475802.1|CL475802  SAIL_244_C04.v1 SAIL Collection Arab...    42   0.22 
gb|BE037822.1|BE037822  AA04G12 AA Arabidopsis thaliana cDNA...    42   0.22 
>gb|CL497539.1|CL497539 SAIL_642_D06.v1 SAIL Collection Arabidopsis thaliana genomic clone
           SAIL_642_D06.v1, DNA sequence
          Length = 1551

 Score = 46.1 bits (23), Expect = 0.014
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 197 ccacacacgcacgcacacatacg 219
           |||||||||||||||||||||||
Sbjct: 592 ccacacacgcacgcacacatacg 614
>gb|CL475802.1|CL475802 SAIL_244_C04.v1 SAIL Collection Arabidopsis thaliana genomic clone
           SAIL_244_C04.v1, DNA sequence
          Length = 1011

 Score = 42.1 bits (21), Expect = 0.22
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 315 tcctcccctccctcctcttct 335
           |||||||||||||||||||||
Sbjct: 991 tcctcccctccctcctcttct 971
>gb|BE037822.1|BE037822 AA04G12 AA Arabidopsis thaliana cDNA 5' similar to translationally
           controlled tumor protein, mRNA sequence
          Length = 822

 Score = 42.1 bits (21), Expect = 0.22
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 313 tttcctcccctccctcctctt 333
           |||||||||||||||||||||
Sbjct: 535 tttcctcccctccctcctctt 555
  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 389,223
Number of Sequences: 1013581
Number of extensions: 389223
Number of successful extensions: 30128
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30124
Number of HSP's gapped (non-prelim): 4
length of query: 1197
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1177
effective length of database: 888,669,252
effective search space: 1045963709604
effective search space used: 1045963709604
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)