BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805139.2.1
(950 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB263312.1|CB263312 26-E8880-008-014-D07-pBl2 MPIZ-ADIS-... 109 9e-022
gb|CB263957.1|CB263957 02-E011587-008-014-D07-pBl2 MPIZ-ADI... 109 9e-022
gb|CB263958.1|CB263958 02-E011587-008-014-D07-rev MPIZ-ADIS... 109 9e-022
gb|BP619414.1|BP619414 BP619414 RAFL16 Arabidopsis thaliana... 109 9e-022
emb|X74319.1|ATLIM1 A.thaliana atl1 gene 109 9e-022
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 109 9e-022
gb|AF370569.1|AF370569 Arabidopsis thaliana similar to tran... 109 9e-022
emb|AX412728.1| Sequence 492 from Patent WO0222675 109 9e-022
gb|AY072143.1| Arabidopsis thaliana At1g10200 mRNA sequence 109 9e-022
gb|AY085377.1| Arabidopsis thaliana clone 148790 mRNA, comp... 109 9e-022
gb|AC005489.1|AC005489 Genomic sequence for Arabidopsis tha... 109 9e-022
ref|NM_100894.2| Arabidopsis thaliana transcription factor/... 109 9e-022
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 109 9e-022
emb|CR379094.1| Arabidopsis thaliana transposon insertion S... 103 5e-020
gb|BP594775.1|BP594775 BP594775 RAFL15 Arabidopsis thaliana... 101 2e-019
gb|BP584963.1|BP584963 BP584963 RAFL14 Arabidopsis thaliana... 96 1e-017
gb|N37716.1|N37716 18943 Lambda-PRL2 Arabidopsis thaliana c... 94 5e-017
gb|AV816234.1|AV816234 AV816234 RAFL9 Arabidopsis thaliana ... 90 8e-016
gb|BP790629.1|BP790629 BP790629 RAFL7 Arabidopsis thaliana ... 90 8e-016
gb|BP668484.1|BP668484 BP668484 RAFL21 Arabidopsis thaliana... 86 1e-014
gb|BX841501.1|BX841501 BX841501 Arabidopsis thaliana Flower... 84 5e-014
emb|CR383925.1| Arabidopsis thaliana transposon insertion S... 80 8e-013
gb|BP668690.1|BP668690 BP668690 RAFL21 Arabidopsis thaliana... 78 3e-012
gb|BP565985.1|BP565985 BP565985 RAFL14 Arabidopsis thaliana... 74 5e-011
gb|BP571714.1|BP571714 BP571714 RAFL14 Arabidopsis thaliana... 74 5e-011
gb|AV831505.1|AV831505 AV831505 RAFL9 Arabidopsis thaliana ... 68 3e-009
gb|BP568211.1|BP568211 BP568211 RAFL14 Arabidopsis thaliana... 68 3e-009
gb|CB254062.1|CB254062 81-E010933-019-003-B21-T7R MPIZ-ADIS... 68 3e-009
gb|BP797384.1|BP797384 BP797384 RAFL14 Arabidopsis thaliana... 68 3e-009
gb|BP830270.1|BP830270 BP830270 RAFL19 Arabidopsis thaliana... 68 3e-009
gb|BP858072.1|BP858072 BP858072 RAFL21 Arabidopsis thaliana... 68 3e-009
gb|AV536967.1|AV536967 AV536967 Arabidopsis thaliana liquid... 66 1e-008
gb|BP811599.1|BP811599 BP811599 RAFL16 Arabidopsis thaliana... 66 1e-008
gb|AV818298.1|AV818298 AV818298 RAFL9 Arabidopsis thaliana ... 64 5e-008
gb|AV536292.1|AV536292 AV536292 Arabidopsis thaliana liquid... 64 5e-008
gb|BP580319.1|BP580319 BP580319 RAFL14 Arabidopsis thaliana... 64 5e-008
gb|BP624147.1|BP624147 BP624147 RAFL17 Arabidopsis thaliana... 64 5e-008
gb|AV808151.1|AV808151 AV808151 RAFL9 Arabidopsis thaliana ... 62 2e-007
gb|BP598786.1|BP598786 BP598786 RAFL16 Arabidopsis thaliana... 60 7e-007
gb|BP808807.1|BP808807 BP808807 RAFL16 Arabidopsis thaliana... 60 7e-007
gb|AW004090.1|AW004090 701494971 A. thaliana, Ohio State cl... 58 3e-006
gb|BP671292.1|BP671292 BP671292 RAFL21 Arabidopsis thaliana... 58 3e-006
gb|BP662011.1|BP662011 BP662011 RAFL21 Arabidopsis thaliana... 56 1e-005
gb|BP665770.1|BP665770 BP665770 RAFL21 Arabidopsis thaliana... 52 2e-004
gb|BP808808.1|BP808808 BP808808 RAFL16 Arabidopsis thaliana... 52 2e-004
gb|T42207.1|T42207 5470 Lambda-PRL2 Arabidopsis thaliana cD... 50 7e-004
gb|BP859211.1|BP859211 BP859211 RAFL21 Arabidopsis thaliana... 50 7e-004
gb|BP604876.1|BP604876 BP604876 RAFL16 Arabidopsis thaliana... 42 0.17
>gb|CB263312.1|CB263312 26-E8880-008-014-D07-pBl2 MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767D0714Q 5-PRIME, mRNA sequence
Length = 554
Score = 109 bits (55), Expect = 9e-022
Identities = 118/139 (84%)
Strand = Plus / Minus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||||||||| || || || |||||||| || |||
Sbjct: 552 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagc 493
Query: 411 ttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcacttg 470
|| |||||||| || ||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 492 ttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacacttg 433
Query: 471 aagcagctcttgtggtaca 489
|||||||||||||||||||
Sbjct: 432 aagcagctcttgtggtaca 414
Score = 60.0 bits (30), Expect = 7e-007
Identities = 99/122 (81%)
Strand = Plus / Minus
Query: 693 ctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgcccttgcag 752
||||||||||| ||||| || ||||||||||| ||| |||||||| || || |||||
Sbjct: 204 ctgcagtagagaactccttcaaaggagttgtaattgctaagcttgagagttcctttgcaa 145
Query: 753 tggtggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgagcttgtccaca 812
||||| || ||||| || || |||||||||| || || |||||||| | |||||| |||
Sbjct: 144 tggtgacatcggaaacaagctttgtggtagacccgattatcggcggttaacttgtcgaca 85
Query: 813 ag 814
||
Sbjct: 84 ag 83
>gb|CB263957.1|CB263957 02-E011587-008-014-D07-pBl2 MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767D0714Q 5-PRIME, mRNA sequence
Length = 592
Score = 109 bits (55), Expect = 9e-022
Identities = 118/139 (84%)
Strand = Plus / Minus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||||||||| || || || |||||||| || |||
Sbjct: 552 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagc 493
Query: 411 ttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcacttg 470
|| |||||||| || ||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 492 ttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacacttg 433
Query: 471 aagcagctcttgtggtaca 489
|||||||||||||||||||
Sbjct: 432 aagcagctcttgtggtaca 414
Score = 60.0 bits (30), Expect = 7e-007
Identities = 99/122 (81%)
Strand = Plus / Minus
Query: 693 ctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgcccttgcag 752
||||||||||| ||||| || ||||||||||| ||| |||||||| || || |||||
Sbjct: 204 ctgcagtagagaactccttcaaaggagttgtaattgctaagcttgagagttcctttgcaa 145
Query: 753 tggtggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgagcttgtccaca 812
||||| || ||||| || || |||||||||| || || |||||||| | |||||| |||
Sbjct: 144 tggtgacatcggaaacaagctttgtggtagacccgattatcggcggttaacttgtcgaca 85
Query: 813 ag 814
||
Sbjct: 84 ag 83
>gb|CB263958.1|CB263958 02-E011587-008-014-D07-rev MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767D0714Q 5-PRIME, mRNA sequence
Length = 592
Score = 109 bits (55), Expect = 9e-022
Identities = 118/139 (84%)
Strand = Plus / Minus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||||||||| || || || |||||||| || |||
Sbjct: 552 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagc 493
Query: 411 ttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcacttg 470
|| |||||||| || ||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 492 ttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacacttg 433
Query: 471 aagcagctcttgtggtaca 489
|||||||||||||||||||
Sbjct: 432 aagcagctcttgtggtaca 414
Score = 60.0 bits (30), Expect = 7e-007
Identities = 99/122 (81%)
Strand = Plus / Minus
Query: 693 ctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgcccttgcag 752
||||||||||| ||||| || ||||||||||| ||| |||||||| || || |||||
Sbjct: 204 ctgcagtagagaactccttcaaaggagttgtaattgctaagcttgagagttcctttgcaa 145
Query: 753 tggtggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgagcttgtccaca 812
||||| || ||||| || || |||||||||| || || |||||||| | |||||| |||
Sbjct: 144 tggtgacatcggaaacaagctttgtggtagacccgattatcggcggttaacttgtcgaca 85
Query: 813 ag 814
||
Sbjct: 84 ag 83
>gb|BP619414.1|BP619414 BP619414 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-33-D05 3',
mRNA sequence
Length = 450
Score = 109 bits (55), Expect = 9e-022
Identities = 118/139 (84%)
Strand = Plus / Plus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||||||||| || || || |||||||| || |||
Sbjct: 271 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagc 330
Query: 411 ttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcacttg 470
|| |||||||| || ||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 331 ttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacacttg 390
Query: 471 aagcagctcttgtggtaca 489
|||||||||||||||||||
Sbjct: 391 aagcagctcttgtggtaca 409
>emb|X74319.1|ATLIM1 A.thaliana atl1 gene
Length = 1140
Score = 109 bits (55), Expect = 9e-022
Identities = 118/139 (84%)
Strand = Plus / Minus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||||||||| || || || |||||||| || |||
Sbjct: 1062 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagc 1003
Query: 411 ttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcacttg 470
|| |||||||| || ||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 1002 ttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacacttg 943
Query: 471 aagcagctcttgtggtaca 489
|||||||||||||||||||
Sbjct: 942 aagcagctcttgtggtaca 924
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 109 bits (55), Expect = 9e-022
Identities = 118/139 (84%)
Strand = Plus / Plus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||||||||| || || || |||||||| || |||
Sbjct: 3346548 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagc 3346607
Query: 411 ttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcacttg 470
|| |||||||| || ||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 3346608 ttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacacttg 3346667
Query: 471 aagcagctcttgtggtaca 489
|||||||||||||||||||
Sbjct: 3346668 aagcagctcttgtggtaca 3346686
>gb|AF370569.1|AF370569 Arabidopsis thaliana similar to transcription factor SF3
(pir|IS37656) (F14N23.8) mRNA, complete cds
Length = 610
Score = 109 bits (55), Expect = 9e-022
Identities = 118/139 (84%)
Strand = Plus / Minus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||||||||| || || || |||||||| || |||
Sbjct: 524 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagc 465
Query: 411 ttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcacttg 470
|| |||||||| || ||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 464 ttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacacttg 405
Query: 471 aagcagctcttgtggtaca 489
|||||||||||||||||||
Sbjct: 404 aagcagctcttgtggtaca 386
Score = 67.9 bits (34), Expect = 3e-009
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 693 ctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgcccttgcag 752
||||||||||| ||||| || ||||||||||| ||| |||||||| || || |||||
Sbjct: 176 ctgcagtagagaactccttcaaaggagttgtaattgctaagcttgagagttcctttgcaa 117
Query: 753 tggtggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgagcttgtccaca 812
||||| || ||||| || || |||||||||| ||||| |||||||| | |||||| |||
Sbjct: 116 tggtgacatcggaaacaagctttgtggtagacccggttatcggcggttaacttgtcgaca 57
Query: 813 ag 814
||
Sbjct: 56 ag 55
>emb|AX412728.1| Sequence 492 from Patent WO0222675
Length = 573
Score = 109 bits (55), Expect = 9e-022
Identities = 118/139 (84%)
Strand = Plus / Minus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||||||||| || || || |||||||| || |||
Sbjct: 524 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagc 465
Query: 411 ttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcacttg 470
|| |||||||| || ||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 464 ttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacacttg 405
Query: 471 aagcagctcttgtggtaca 489
|||||||||||||||||||
Sbjct: 404 aagcagctcttgtggtaca 386
Score = 67.9 bits (34), Expect = 3e-009
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 693 ctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgcccttgcag 752
||||||||||| ||||| || ||||||||||| ||| |||||||| || || |||||
Sbjct: 176 ctgcagtagagaactccttcaaaggagttgtaattgctaagcttgagagttcctttgcaa 117
Query: 753 tggtggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgagcttgtccaca 812
||||| || ||||| || || |||||||||| ||||| |||||||| | |||||| |||
Sbjct: 116 tggtgacatcggaaacaagctttgtggtagacccggttatcggcggttaacttgtcgaca 57
Query: 813 ag 814
||
Sbjct: 56 ag 55
>gb|AY072143.1| Arabidopsis thaliana At1g10200 mRNA sequence
Length = 873
Score = 109 bits (55), Expect = 9e-022
Identities = 118/139 (84%)
Strand = Plus / Minus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||||||||| || || || |||||||| || |||
Sbjct: 574 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagc 515
Query: 411 ttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcacttg 470
|| |||||||| || ||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 514 ttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacacttg 455
Query: 471 aagcagctcttgtggtaca 489
|||||||||||||||||||
Sbjct: 454 aagcagctcttgtggtaca 436
Score = 67.9 bits (34), Expect = 3e-009
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 693 ctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgcccttgcag 752
||||||||||| ||||| || ||||||||||| ||| |||||||| || || |||||
Sbjct: 227 ctgcagtagagaactccttcaaaggagttgtaattgctaagcttgagagttcctttgcaa 168
Query: 753 tggtggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgagcttgtccaca 812
||||| || ||||| || || |||||||||| ||||| |||||||| | |||||| |||
Sbjct: 167 tggtgacatcggaaacaagctttgtggtagacccggttatcggcggttaacttgtcgaca 108
Query: 813 ag 814
||
Sbjct: 107 ag 106
>gb|AY085377.1| Arabidopsis thaliana clone 148790 mRNA, complete sequence
Length = 886
Score = 109 bits (55), Expect = 9e-022
Identities = 118/139 (84%)
Strand = Plus / Minus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||||||||| || || || |||||||| || |||
Sbjct: 608 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagc 549
Query: 411 ttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcacttg 470
|| |||||||| || ||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 548 ttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacacttg 489
Query: 471 aagcagctcttgtggtaca 489
|||||||||||||||||||
Sbjct: 488 aagcagctcttgtggtaca 470
Score = 60.0 bits (30), Expect = 7e-007
Identities = 99/122 (81%)
Strand = Plus / Minus
Query: 693 ctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgcccttgcag 752
||||||||||| ||||| || ||||||||||| ||| |||||||| || || |||||
Sbjct: 260 ctgcagtagagaactccttcaaaggagttgtaattgctaagcttgagagttcctttgcaa 201
Query: 753 tggtggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgagcttgtccaca 812
||||| || ||||| || || |||||||||| || || |||||||| | |||||| |||
Sbjct: 200 tggtgacatcggaaacaagctttgtggtagacccgattatcggcggttaacttgtcgaca 141
Query: 813 ag 814
||
Sbjct: 140 ag 139
>gb|AC005489.1|AC005489 Genomic sequence for Arabidopsis thaliana BAC F14N23 from Chromosome 1,
complete sequence
Length = 100746
Score = 109 bits (55), Expect = 9e-022
Identities = 118/139 (84%)
Strand = Plus / Plus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||||||||| || || || |||||||| || |||
Sbjct: 27086 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagc 27145
Query: 411 ttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcacttg 470
|| |||||||| || ||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 27146 ttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacacttg 27205
Query: 471 aagcagctcttgtggtaca 489
|||||||||||||||||||
Sbjct: 27206 aagcagctcttgtggtaca 27224
>ref|NM_100894.2| Arabidopsis thaliana transcription factor/ zinc ion binding
AT1G10200 mRNA, complete cds
Length = 944
Score = 109 bits (55), Expect = 9e-022
Identities = 118/139 (84%)
Strand = Plus / Minus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||||||||| || || || |||||||| || |||
Sbjct: 608 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagc 549
Query: 411 ttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcacttg 470
|| |||||||| || ||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 548 ttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacacttg 489
Query: 471 aagcagctcttgtggtaca 489
|||||||||||||||||||
Sbjct: 488 aagcagctcttgtggtaca 470
Score = 67.9 bits (34), Expect = 3e-009
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 693 ctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgcccttgcag 752
||||||||||| ||||| || ||||||||||| ||| |||||||| || || |||||
Sbjct: 260 ctgcagtagagaactccttcaaaggagttgtaattgctaagcttgagagttcctttgcaa 201
Query: 753 tggtggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgagcttgtccaca 812
||||| || ||||| || || |||||||||| ||||| |||||||| | |||||| |||
Sbjct: 200 tggtgacatcggaaacaagctttgtggtagacccggttatcggcggttaacttgtcgaca 141
Query: 813 ag 814
||
Sbjct: 140 ag 139
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 109 bits (55), Expect = 9e-022
Identities = 118/139 (84%)
Strand = Plus / Plus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||||||||| || || || |||||||| || |||
Sbjct: 3346728 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagc 3346787
Query: 411 ttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcacttg 470
|| |||||||| || ||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 3346788 ttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacacttg 3346847
Query: 471 aagcagctcttgtggtaca 489
|||||||||||||||||||
Sbjct: 3346848 aagcagctcttgtggtaca 3346866
>emb|CR379094.1| Arabidopsis thaliana transposon insertion STS GT_5.112768, sequence
tagged site
Length = 140
Score = 103 bits (52), Expect = 5e-020
Identities = 115/136 (84%)
Strand = Plus / Minus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||||||||| || || || |||||||| || |||
Sbjct: 136 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagc 77
Query: 411 ttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcacttg 470
|| |||||||| || ||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 76 ttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacacttg 17
Query: 471 aagcagctcttgtggt 486
||||||||||||||||
Sbjct: 16 aagcagctcttgtggt 1
>gb|BP594775.1|BP594775 BP594775 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-27-D06 3',
mRNA sequence
Length = 461
Score = 101 bits (51), Expect = 2e-019
Identities = 117/139 (84%)
Strand = Plus / Plus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||||||||| || || || |||||||| || |||
Sbjct: 271 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagc 330
Query: 411 ttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcacttg 470
|| |||||||| || ||||| || |||||| | || ||||| |||||||| ||||||
Sbjct: 331 ttaccctcgtgagctatgtaattcgaagggtttatcgtgcagcctccatgtgtacacttg 390
Query: 471 aagcagctcttgtggtaca 489
|||||||||||||||||||
Sbjct: 391 aagcagctcttgtggtaca 409
>gb|BP584963.1|BP584963 BP584963 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-48-J09 3',
mRNA sequence
Length = 445
Score = 95.6 bits (48), Expect = 1e-017
Identities = 118/140 (84%), Gaps = 1/140 (0%)
Strand = Plus / Plus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||||||||| || || || |||||||| || |||
Sbjct: 303 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagc 362
Query: 411 ttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcacttg 470
|| |||||||| || ||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 363 ttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacacttg 422
Query: 471 aagcag-ctcttgtggtaca 489
|||||| |||||||||||||
Sbjct: 423 aagcagcctcttgtggtaca 442
>gb|N37716.1|N37716 18943 Lambda-PRL2 Arabidopsis thaliana cDNA clone 209A20T7, mRNA
sequence
Length = 427
Score = 93.7 bits (47), Expect = 5e-017
Identities = 115/139 (82%)
Strand = Plus / Minus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||||||||| || || || |||||||| || |||
Sbjct: 207 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagc 148
Query: 411 ttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcacttg 470
|| |||||||| || ||||| || |||||||| || ||||| ||||||| |||||
Sbjct: 147 ttaccctcgtgagctatgtaattcgaagggcttatcgtgcannctccatgtgtanacttg 88
Query: 471 aagcagctcttgtggtaca 489
|||||| ||||||||||||
Sbjct: 87 aagcagntcttgtggtaca 69
>gb|AV816234.1|AV816234 AV816234 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-89-N21 3',
mRNA sequence
Length = 420
Score = 89.7 bits (45), Expect = 8e-016
Identities = 114/137 (83%)
Strand = Plus / Plus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||||||||| || || || |||| ||| || |||
Sbjct: 284 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgctggcaatatagc 343
Query: 411 ttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcacttg 470
|| |||||||| || ||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 344 ttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacacttg 403
Query: 471 aagcagctcttgtggta 487
|||||||||| ||||||
Sbjct: 404 aagcagctctggtggta 420
>gb|BP790629.1|BP790629 BP790629 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-44-A22 3',
mRNA sequence
Length = 437
Score = 89.7 bits (45), Expect = 8e-016
Identities = 102/121 (84%)
Strand = Plus / Plus
Query: 369 ttctccttgatcagctggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatg 428
||||||||||||||||| || || || |||||||| || ||||| |||||||| || |||
Sbjct: 294 ttctccttgatcagctgaatatgatgatgcttgcaatatagcttaccctcgtgagctatg 353
Query: 429 tagttagaagggctgatggtgcaccctccatggcagcacttgaagcagctcttgtggtac 488
|| || |||||||| || ||||| |||||||| |||||||||||||||||||||||
Sbjct: 354 taattcgaagggcttatcgtgcagcctccatgtgtaaacttgaagcagctcttgtggtac 413
Query: 489 a 489
|
Sbjct: 414 a 414
>gb|BP668484.1|BP668484 BP668484 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-27-G20 3',
mRNA sequence
Length = 421
Score = 85.7 bits (43), Expect = 1e-014
Identities = 106/127 (83%)
Strand = Plus / Plus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||||||||| || || || |||||||| || |||
Sbjct: 276 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagc 335
Query: 411 ttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcacttg 470
|| |||||||| || ||||| || |||||||| || ||||| |||||||| ||||||
Sbjct: 336 ttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatgtgtacacttg 395
Query: 471 aagcagc 477
|||||||
Sbjct: 396 aagcagc 402
>gb|BX841501.1|BX841501 BX841501 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB90ZE10 5PRIM, mRNA sequence
Length = 845
Score = 83.8 bits (42), Expect = 5e-014
Identities = 108/130 (83%)
Strand = Plus / Minus
Query: 360 aagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagcttcccctcg 419
||||| || ||||||||||||||||| || || || |||||||| || ||||| ||||||
Sbjct: 560 aagtttcctttctccttgatcagctgaatatgttgatgcttgcaatatagcttaccctcg 501
Query: 420 tgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcacttgaagcagctc 479
|| || ||||| || |||||||| || | ||| |||||||| ||||||||||||||
Sbjct: 500 tgagctatgtaattcgaagggcttatcgggcagcctccatgtgtaaacttgaagcagctc 441
Query: 480 ttgtggtaca 489
||||||||||
Sbjct: 440 ttgtggtaca 431
Score = 67.9 bits (34), Expect = 3e-009
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 693 ctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgcccttgcag 752
||||||||||| ||||| || ||||||||||| ||| |||||||| || || |||||
Sbjct: 220 ctgcagtagagaactccttcaaaggagttgtaattgctaagcttgagagttcctttgcaa 161
Query: 753 tggtggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgagcttgtccaca 812
||||| || ||||| || || |||||||||| ||||| |||||||| | |||||| |||
Sbjct: 160 tggtgacatcggaaacaagctttgtggtagacccggttatcggcggttaacttgtcgaca 101
Query: 813 ag 814
||
Sbjct: 100 ag 99
>emb|CR383925.1| Arabidopsis thaliana transposon insertion STS GT_5.106034, sequence
tagged site
Length = 291
Score = 79.8 bits (40), Expect = 8e-013
Identities = 116/139 (83%), Gaps = 2/139 (1%)
Strand = Plus / Minus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||||||||| || || || |||||||| || |||
Sbjct: 159 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagc 100
Query: 411 ttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctc-catg-gcagcact 468
|| |||||||| || ||||| || |||||||| || ||||| |||| |||| | | ||
Sbjct: 99 ttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctctcatgtgtacanct 40
Query: 469 tgaagcagctcttgtggta 487
|||||||||||||||||||
Sbjct: 39 tgaagcagctcttgtggta 21
>gb|BP668690.1|BP668690 BP668690 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-28-D19 3',
mRNA sequence
Length = 425
Score = 77.8 bits (39), Expect = 3e-012
Identities = 120/142 (84%), Gaps = 5/142 (3%)
Strand = Plus / Plus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgc-agtacag 409
|||||||| ||||| || ||||||||||||||||| || || || ||||||| | || ||
Sbjct: 278 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgcttgcaattatag 337
Query: 410 cttcccctcgtgcgca-atgtagttagaagggctgatggtgcaccctccatg-gcagcac 467
||| |||||||| ||| ||||| || |||||||| || ||||| |||||||| | | ||
Sbjct: 338 cttaccctcgtgagcatatgtaattcgaagggcttatcgtgcagcctccatgtgta--ac 395
Query: 468 ttgaagcagctcttgtggtaca 489
||||||||||||||||||||||
Sbjct: 396 ttgaagcagctcttgtggtaca 417
>gb|BP565985.1|BP565985 BP565985 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-52-B03 3',
mRNA sequence
Length = 451
Score = 73.8 bits (37), Expect = 5e-011
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 360 aagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagcttcccctcg 419
||||| || ||||||||||||||||| || || || |||||||| || ||||| ||||||
Sbjct: 334 aagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagcttaccctcg 393
Query: 420 tgcgcaatgtagttagaagggctgatggtgcaccctccatg 460
|| || ||||| || |||||||| || ||||| ||||||||
Sbjct: 394 tgagctatgtaattcgaagggcttatcgtgcagcctccatg 434
>gb|BP571714.1|BP571714 BP571714 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-77-E19 3',
mRNA sequence
Length = 449
Score = 73.8 bits (37), Expect = 5e-011
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 360 aagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagcttcccctcg 419
||||| || ||||||||||||||||| || || || |||||||| || ||||| ||||||
Sbjct: 336 aagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagcttaccctcg 395
Query: 420 tgcgcaatgtagttagaagggctgatggtgcaccctccatg 460
|| || ||||| || |||||||| || ||||| ||||||||
Sbjct: 396 tgagctatgtaattcgaagggcttatcgtgcagcctccatg 436
>gb|AV831505.1|AV831505 AV831505 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-89-N21 5',
mRNA sequence
Length = 580
Score = 67.9 bits (34), Expect = 3e-009
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 693 ctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgcccttgcag 752
||||||||||| ||||| || ||||||||||| ||| |||||||| || || |||||
Sbjct: 228 ctgcagtagagaactccttcaaaggagttgtaattgctaagcttgagagttcctttgcaa 169
Query: 753 tggtggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgagcttgtccaca 812
||||| || ||||| || || |||||||||| ||||| |||||||| | |||||| |||
Sbjct: 168 tggtgacatcggaaacaagctttgtggtagacccggttatcggcggttaacttgtcgaca 109
Query: 813 ag 814
||
Sbjct: 108 ag 107
Score = 60.0 bits (30), Expect = 7e-007
Identities = 77/93 (82%)
Strand = Plus / Minus
Query: 397 gcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctc 456
||||||| || ||||| |||||||| || ||||| || || ||||| || ||||| ||||
Sbjct: 529 gcttgcaatatagcttaccctcgtgagctatgtaattcgaggggcttatcgtgcagcctc 470
Query: 457 catggcagcacttgaagcagctcttgtggtaca 489
|||| ||||||||||||||| |||||||||
Sbjct: 469 catgtgtacacttgaagcagctcntgtggtaca 437
>gb|BP568211.1|BP568211 BP568211 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-61-D24 3',
mRNA sequence
Length = 436
Score = 67.9 bits (34), Expect = 3e-009
Identities = 88/106 (83%)
Strand = Plus / Plus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||| ||||||||||| || || || |||||||| || |||
Sbjct: 329 agctggctcaagtttcctttctcgttgatcagctgaatatgatgatgcttgcactatagc 388
Query: 411 ttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctc 456
|| |||||||| || ||||| || |||||||| || ||||| ||||
Sbjct: 389 ttaccctcgtgagctatgtaattcgaagggcttatcgtgcagcctc 434
>gb|CB254062.1|CB254062 81-E010933-019-003-B21-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768B213Q 5-PRIME, mRNA sequence
Length = 504
Score = 67.9 bits (34), Expect = 3e-009
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 693 ctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgcccttgcag 752
||||||||||| ||||| || ||||||||||| ||| |||||||| || || |||||
Sbjct: 229 ctgcagtagagaactccttcaaaggagttgtaattgctaagcttgagagttcctttgcaa 170
Query: 753 tggtggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgagcttgtccaca 812
||||| || ||||| || || |||||||||| ||||| |||||||| | |||||| |||
Sbjct: 169 tggtgacatcggaaacaagctttgtggtagacccggttatcggcggttaacttgtcgaca 110
Query: 813 ag 814
||
Sbjct: 109 ag 108
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 426 atgtagttagaagggctgatggtgcaccctccatggcagcacttgaagcagctcttgtgg 485
||||| || |||||||| || ||||| |||||||| |||||||||||||||||||||
Sbjct: 502 atgtaattcgaagggcttatcgtgcagcctccatgtgtacacttgaagcagctcttgtgg 443
Query: 486 taca 489
||||
Sbjct: 442 taca 439
>gb|BP797384.1|BP797384 BP797384 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-03-D10 5',
mRNA sequence
Length = 388
Score = 67.9 bits (34), Expect = 3e-009
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 693 ctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgcccttgcag 752
||||||||||| ||||| || ||||||||||| ||| |||||||| || || |||||
Sbjct: 224 ctgcagtagagaactccttcaaaggagttgtaattgctaagcttgagagttcctttgcaa 165
Query: 753 tggtggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgagcttgtccaca 812
||||| || ||||| || || |||||||||| ||||| |||||||| | |||||| |||
Sbjct: 164 tggtgacatcggaaacaagctttgtggtagacccggttatcggcggttaacttgtcgaca 105
Query: 813 ag 814
||
Sbjct: 104 ag 103
>gb|BP830270.1|BP830270 BP830270 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-84-N06 5',
mRNA sequence
Length = 375
Score = 67.9 bits (34), Expect = 3e-009
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 693 ctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgcccttgcag 752
||||||||||| ||||| || ||||||||||| ||| |||||||| || || |||||
Sbjct: 202 ctgcagtagagaactccttcaaaggagttgtaattgctaagcttgagagttcctttgcaa 143
Query: 753 tggtggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgagcttgtccaca 812
||||| || ||||| || || |||||||||| ||||| |||||||| | |||||| |||
Sbjct: 142 tggtgacatcggaaacaagctttgtggtagacccggttatcggcggttaacttgtcgaca 83
Query: 813 ag 814
||
Sbjct: 82 ag 81
>gb|BP858072.1|BP858072 BP858072 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-35-L24 5',
mRNA sequence
Length = 355
Score = 67.9 bits (34), Expect = 3e-009
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 693 ctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgcccttgcag 752
||||||||||| ||||| || ||||||||||| ||| |||||||| || || |||||
Sbjct: 270 ctgcagtagagaactccttcaaaggagttgtaattgctaagcttgagagttcctttgcaa 211
Query: 753 tggtggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgagcttgtccaca 812
||||| || ||||| || || |||||||||| ||||| |||||||| | |||||| |||
Sbjct: 210 tggtgacatcggaaacaagctttgtggtagacccggttatcggcggttaacttgtcgaca 151
Query: 813 ag 814
||
Sbjct: 150 ag 149
>gb|AV536967.1|AV536967 AV536967 Arabidopsis thaliana liquid-cultured seedlings Columbia
Arabidopsis thaliana cDNA clone pAZNII0748R 5', mRNA
sequence
Length = 460
Score = 65.9 bits (33), Expect = 1e-008
Identities = 99/121 (81%)
Strand = Plus / Minus
Query: 693 ctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgcccttgcag 752
||||||||||| ||||| || ||||||||||| ||| |||||||| || || |||||
Sbjct: 234 ctgcagtagagaactccttcaaaggagttgtaattgctaagcttgagagttcctttgcaa 175
Query: 753 tggtggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgagcttgtccaca 812
||||| || ||||| || || |||||||||| ||||| |||||||| | |||||| |||
Sbjct: 174 tggtgacatcggaaacaagctttgtggtagacccggttatcggcggttaacttgtcgaca 115
Query: 813 a 813
|
Sbjct: 114 a 114
>gb|BP811599.1|BP811599 BP811599 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-31-I16 5',
mRNA sequence
Length = 412
Score = 65.9 bits (33), Expect = 1e-008
Identities = 99/121 (81%)
Strand = Plus / Minus
Query: 693 ctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgcccttgcag 752
||||||||||| ||||| || ||||||||||| ||| |||||||| || || |||||
Sbjct: 273 ctgcagtagagaactccttcaaaggagttgtaattgctaagcttgagagttcctttgcaa 214
Query: 753 tggtggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgagcttgtccaca 812
||||| || ||||| || || |||||||||| ||||| |||||||| | |||||| |||
Sbjct: 213 tggtgacatcggaaacaagctttgtggtagacccggttatcggcggttaacttgtcgaca 154
Query: 813 a 813
|
Sbjct: 153 a 153
>gb|AV818298.1|AV818298 AV818298 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-97-J16 3',
mRNA sequence
Length = 418
Score = 63.9 bits (32), Expect = 5e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||||||||| || || || |||||||| || |||
Sbjct: 337 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagc 396
Query: 411 ttcccctcgtgcgcaatgta 430
|| |||||||| || |||||
Sbjct: 397 ttaccctcgtgagctatgta 416
>gb|AV536292.1|AV536292 AV536292 Arabidopsis thaliana liquid-cultured seedlings Columbia
Arabidopsis thaliana cDNA clone pAZNII0748F 3', mRNA
sequence
Length = 360
Score = 63.9 bits (32), Expect = 5e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||||||||| || || || |||||||| || |||
Sbjct: 278 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagc 337
Query: 411 ttcccctcgtgcgcaatgta 430
|| |||||||| || |||||
Sbjct: 338 ttaccctcgtgagctatgta 357
>gb|BP580319.1|BP580319 BP580319 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-26-K04 3',
mRNA sequence
Length = 429
Score = 63.9 bits (32), Expect = 5e-008
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 360 aagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagcttcccctcg 419
||||| || ||||||||||||||||| || || || |||||||| || ||||| ||||||
Sbjct: 338 aagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagcttaccctcg 397
Query: 420 tgcgcaatgtagttagaagggctgatggtgca 451
|| || ||||| || |||||||| || |||||
Sbjct: 398 tgagctatgtaattcgaagggcttatcgtgca 429
>gb|BP624147.1|BP624147 BP624147 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-39-B22 3',
mRNA sequence
Length = 429
Score = 63.9 bits (32), Expect = 5e-008
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||||||||| || || || |||||| | || |||
Sbjct: 337 agctggctcaagtttcctttctccttgatcagctgaatatgatgatgcttgaaatatagc 396
Query: 411 ttcccctcgtgcgcaatgtagttagaagggct 442
|| |||||||| || ||||| || ||||||||
Sbjct: 397 ttaccctcgtgagctatgtaattcgaagggct 428
>gb|AV808151.1|AV808151 AV808151 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-53-H17 3',
mRNA sequence
Length = 430
Score = 61.9 bits (31), Expect = 2e-007
Identities = 93/111 (83%), Gaps = 2/111 (1%)
Strand = Plus / Plus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||||| ||||| ||||||||||| || || || |||||||| || |||
Sbjct: 321 agctggctcaagttcct-ttctcgttgatcagctgaatatgatgatgcttgcaatatagc 379
Query: 411 tt-cccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatg 460
|| ||||||||| || ||||| || |||||||| || ||||| ||||||||
Sbjct: 380 ttacccctcgtgagctatgtaattcgaagggcttatcgtgcagcctccatg 430
>gb|BP598786.1|BP598786 BP598786 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-04-K09 3',
mRNA sequence
Length = 442
Score = 60.0 bits (30), Expect = 7e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||||||||| ||||| || || || |||||| | || |||
Sbjct: 321 agctggctcaagtttcctttctccttgataagctgaatatgatgatgcttgaaatatagc 380
Query: 411 ttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatg 460
|| |||||||| || || || || |||||||| || ||||| ||||||||
Sbjct: 381 ttaccctcgtgagctatttaattcgaagggcttatcgtgcagcctccatg 430
>gb|BP808807.1|BP808807 BP808807 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-19-D17 5',
mRNA sequence
Length = 394
Score = 60.0 bits (30), Expect = 7e-007
Identities = 90/110 (81%)
Strand = Plus / Minus
Query: 705 actccctcgaaggagttgtagttggcgagcttgagggtgcccttgcagtggtggcagcgg 764
||||| || ||||||||||| |||| |||||||| || || ||||| ||||| || |||
Sbjct: 221 actccttcaaaggagttgtaattggtaagcttgagagttcctttgcaatggtgacatcgg 162
Query: 765 aagcaggccttgtggtagatgcggttgtcggcggtgagcttgtccacaag 814
|| || || |||||||||| ||||| |||||||| | |||||| |||||
Sbjct: 161 aaacaagctttgtggtagacccggttatcggcggttaacttgtcgacaag 112
>gb|AW004090.1|AW004090 701494971 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701494971, mRNA sequence
Length = 568
Score = 58.0 bits (29), Expect = 3e-006
Identities = 99/121 (81%), Gaps = 1/121 (0%)
Strand = Plus / Minus
Query: 369 ttctccttgatcagctggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatg 428
|||||||||||| |||| || || || |||||||| || ||||| |||||||| || |||
Sbjct: 513 ttctccttgatccgctgaatatgatgatgcttgcaatatagcttaccctcgtgagctatg 454
Query: 429 tagttagaagggctgatggtgcaccctccatggcagcacttgaagcagctcttgtggtac 488
|| | ||| |||| || ||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 453 taatccgaa-ggcttatcgtgcagcctccatgtgtacacttgaagcacctcttgtggtac 395
Query: 489 a 489
|
Sbjct: 394 a 394
>gb|BP671292.1|BP671292 BP671292 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-39-E03 3',
mRNA sequence
Length = 423
Score = 58.0 bits (29), Expect = 3e-006
Identities = 96/117 (82%), Gaps = 1/117 (0%)
Strand = Plus / Plus
Query: 374 cttgatcagctggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagtt 433
|||||||||||| || || || |||||||| || ||||| |||| ||| || ||||| ||
Sbjct: 299 cttgatcagctgaatatgatgatgcttgcaatatagcttaccctggtgagctatgtaatt 358
Query: 434 agaagggctgatggtgca-ccctccatggcagcacttgaagcagctcttgtggtaca 489
|||||||| || ||||| ||||||||| |||||||||||||| |||||||||
Sbjct: 359 cgaagggcttatcgtgcagccctccatgtgtaaacttgaagcagctcctgtggtaca 415
>gb|BP662011.1|BP662011 BP662011 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-09-P19 3',
mRNA sequence
Length = 406
Score = 56.0 bits (28), Expect = 1e-005
Identities = 106/131 (80%), Gaps = 2/131 (1%)
Strand = Plus / Plus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||| | ||||| || ||||||||||||||||| || || || |||||||| || |||
Sbjct: 276 agctgggtcaagtttcctttctccttgatcagctgaatatgatgatgcttgcaatatagc 335
Query: 411 tt--cccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcact 468
| ||||||||| || ||||| || |||||||| || ||||| ||||||| ||||
Sbjct: 336 ctaacccctcgtgagctatgtaattcgaagggcttatcgtgcaggctccatgtgtacact 395
Query: 469 tgaagcagctc 479
|||||||||||
Sbjct: 396 tgaagcagctc 406
>gb|BP665770.1|BP665770 BP665770 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-17-I05 3',
mRNA sequence
Length = 430
Score = 52.0 bits (26), Expect = 2e-004
Identities = 90/110 (81%), Gaps = 1/110 (0%)
Strand = Plus / Plus
Query: 351 agctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagtacagc 410
|||||||| ||||| || ||||| ||||||||||| || || || |||||| | || |||
Sbjct: 320 agctggctcaagtttcctttctc-ttgatcagctgaatatgatgatgcttggaatatagc 378
Query: 411 ttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatg 460
|| |||||||| || ||||| || |||||||| || ||| | ||||||||
Sbjct: 379 ttaccctcgtgagctatgtaattcgaagggcttatcgtggagcctccatg 428
>gb|BP808808.1|BP808808 BP808808 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-19-D18 5',
mRNA sequence
Length = 393
Score = 52.0 bits (26), Expect = 2e-004
Identities = 98/122 (80%)
Strand = Plus / Minus
Query: 693 ctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgcccttgcag 752
||||||||||| ||||| || |||||||||| ||| |||||||| || || ||||
Sbjct: 233 ctgcagtagagaactccttcaaaggagttgttattgctaagcttgagagttcctttgcca 174
Query: 753 tggtggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgagcttgtccaca 812
||||| || ||||| || || |||||||||| ||||| |||||||| | |||||| |||
Sbjct: 173 tggtgacatcggaaacaagctttgtggtagacccggttatcggcggttaacttgtcgaca 114
Query: 813 ag 814
||
Sbjct: 113 ag 112
>gb|T42207.1|T42207 5470 Lambda-PRL2 Arabidopsis thaliana cDNA clone 111C13T7, mRNA
sequence
Length = 414
Score = 50.1 bits (25), Expect = 7e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 465 cacttgaagcagctcttgtggtaca 489
|||||||||||||||||||||||||
Sbjct: 319 cacttgaagcagctcttgtggtaca 295
Score = 44.1 bits (22), Expect = 0.044
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 693 ctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgcccttgcag 752
||||||||||| ||||| || ||||||||||| ||| |||||||| || || |||||
Sbjct: 85 ctgcagtagagaactccttcaaaggagttgtaattgctaagcttgagagttcctttgcaa 26
Query: 753 tggtggcagcggaa 766
||||| || |||||
Sbjct: 25 tggtgacatcggaa 12
>gb|BP859211.1|BP859211 BP859211 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-39-N20 5',
mRNA sequence
Length = 393
Score = 50.1 bits (25), Expect = 7e-004
Identities = 85/105 (80%)
Strand = Plus / Minus
Query: 693 ctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgcccttgcag 752
||||||||||| ||||| || ||||||||||| ||| |||||||| || || ||||
Sbjct: 269 ctgcagtagagaactccttccaaggagttgtaattgctaagcttgagagttcctttgcca 210
Query: 753 tggtggcagcggaagcaggccttgtggtagatgcggttgtcggcg 797
||||| || ||||| || || |||||||||| ||||| ||||||
Sbjct: 209 tggtgacatcggaaacaagctttgtggtagacccggttatcggcg 165
>gb|BP604876.1|BP604876 BP604876 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-64-K11 3',
mRNA sequence
Length = 413
Score = 42.1 bits (21), Expect = 0.17
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 369 ttctccttgatcagctggatgtggtggtgcttgcagtacagcttcccctcgtg 421
||||||||||||||||| || || || |||||||| || ||||| || |||||
Sbjct: 320 ttctccttgatcagctgaatatgatgatgcttgcaatatagcttaccttcgtg 372
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 432,687
Number of Sequences: 1013581
Number of extensions: 432687
Number of successful extensions: 33546
Number of sequences better than 0.5: 48
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 33074
Number of HSP's gapped (non-prelim): 449
length of query: 950
length of database: 908,940,872
effective HSP length: 20
effective length of query: 930
effective length of database: 888,669,252
effective search space: 826462404360
effective search space used: 826462404360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)