BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804958.2.1
(1118 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U91995.1|ATU91995 Arabidopsis thaliana Argonaute protein... 258 2e-066
gb|AY080690.1| Arabidopsis thaliana At1g48410 mRNA sequence 258 2e-066
gb|BT000941.1| Arabidopsis thaliana clone C105223 putative ... 258 2e-066
ref|NM_103737.2| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT... 258 2e-066
ref|NM_179453.1| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT... 258 2e-066
gb|CK119358.1|CK119358 212p13.p1 AtM1 Arabidopsis thaliana ... 252 1e-064
gb|AV441187.1|AV441187 AV441187 Arabidopsis thaliana above-... 178 1e-042
gb|AV545970.1|AV545970 AV545970 Arabidopsis thaliana roots ... 178 1e-042
gb|AV563657.1|AV563657 AV563657 Arabidopsis thaliana green ... 178 1e-042
gb|AV523806.1|AV523806 AV523806 Arabidopsis thaliana aboveg... 176 5e-042
gb|BE523184.1|BE523184 M35A4STM Arabidopsis developing seed... 170 3e-040
emb|BX815116.1|CNS0AAU5 Arabidopsis thaliana Full-length cD... 170 3e-040
emb|BX818680.1|CNS0ACI7 Arabidopsis thaliana Full-length cD... 170 3e-040
gb|AV529891.1|AV529891 AV529891 Arabidopsis thaliana aboveg... 143 8e-032
gb|AV548086.1|AV548086 AV548086 Arabidopsis thaliana roots ... 143 8e-032
gb|AV548172.1|AV548172 AV548172 Arabidopsis thaliana roots ... 143 8e-032
gb|AY600524.1| Arabidopsis thaliana hypothetical protein (A... 143 8e-032
gb|AV560716.1|AV560716 AV560716 Arabidopsis thaliana green ... 141 3e-031
gb|AV532952.1|AV532952 AV532952 Arabidopsis thaliana flower... 139 1e-030
gb|AV534003.1|AV534003 AV534003 Arabidopsis thaliana flower... 139 1e-030
gb|BP795190.1|BP795190 BP795190 RAFL7 Arabidopsis thaliana ... 129 1e-027
gb|CK121100.1|CK121100 204j21.p1 AtM1 Arabidopsis thaliana ... 125 2e-026
gb|AI993691.1|AI993691 701497176 A. thaliana, Ohio State cl... 119 1e-024
gb|BP618364.1|BP618364 BP618364 RAFL16 Arabidopsis thaliana... 119 1e-024
gb|BP619936.1|BP619936 BP619936 RAFL16 Arabidopsis thaliana... 115 2e-023
gb|AV442417.1|AV442417 AV442417 Arabidopsis thaliana above-... 105 2e-020
gb|CB260762.1|CB260762 67-E009520-012-003-F21-T7R MPIZ-ADIS... 100 1e-018
gb|BP640077.1|BP640077 BP640077 RAFL19 Arabidopsis thaliana... 100 1e-018
emb|AJ223508.1|ART223508 Arabidopsis thaliana mRNA for Zwil... 100 1e-018
emb|AX505737.1| Sequence 432 from Patent WO0216655 100 1e-018
ref|NM_123748.2| Arabidopsis thaliana ZLL (ZWILLE) AT5G4381... 100 1e-018
gb|BP575189.1|BP575189 BP575189 RAFL14 Arabidopsis thaliana... 94 6e-017
gb|BP601377.1|BP601377 BP601377 RAFL16 Arabidopsis thaliana... 94 6e-017
gb|BP611041.1|BP611041 BP611041 RAFL16 Arabidopsis thaliana... 94 6e-017
gb|BP617474.1|BP617474 BP617474 RAFL16 Arabidopsis thaliana... 94 6e-017
gb|AV792863.1|AV792863 AV792863 RAFL7 Arabidopsis thaliana ... 88 4e-015
gb|CA781259.1|CA781259 014A08AF Infected Arabidopsis Leaf A... 86 2e-014
gb|BP657306.1|BP657306 BP657306 RAFL19 Arabidopsis thaliana... 84 6e-014
gb|BP785021.1|BP785021 BP785021 RAFL7 Arabidopsis thaliana ... 84 6e-014
gb|B96649.1|B96649 T30P20TR TAMU Arabidopsis thaliana genom... 82 2e-013
gb|BP606094.1|BP606094 BP606094 RAFL16 Arabidopsis thaliana... 82 2e-013
gb|AC020889.3|AC020889 Genomic sequence for Arabidopsis tha... 82 2e-013
gb|AC007932.3|F11A17 Arabidopsis thaliana chromosome 1 BAC ... 82 2e-013
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 82 2e-013
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 82 2e-013
emb|BX530819.1| Arabidopsis thaliana T-DNA flanking sequenc... 76 1e-011
emb|BX530820.1| Arabidopsis thaliana T-DNA flanking sequenc... 76 1e-011
gb|BP658160.1|BP658160 BP658160 RAFL19 Arabidopsis thaliana... 76 1e-011
gb|AV813765.1|AV813765 AV813765 RAFL9 Arabidopsis thaliana ... 70 9e-010
gb|BP782038.1|BP782038 BP782038 RAFL7 Arabidopsis thaliana ... 70 9e-010
gb|BX838222.1|BX838222 BX838222 Arabidopsis thaliana Siliqu... 68 4e-009
gb|BP782965.1|BP782965 BP782965 RAFL7 Arabidopsis thaliana ... 68 4e-009
gb|BP647257.1|BP647257 BP647257 RAFL19 Arabidopsis thaliana... 66 1e-008
gb|BP780450.1|BP780450 BP780450 RAFL7 Arabidopsis thaliana ... 62 2e-007
gb|BP611537.1|BP611537 BP611537 RAFL16 Arabidopsis thaliana... 60 9e-007
emb|BX821460.1|CNS0A8DH Arabidopsis thaliana Full-length cD... 60 9e-007
ref|NM_179779.1| Arabidopsis thaliana unknown protein AT2G2... 60 9e-007
gb|BP605782.1|BP605782 BP605782 RAFL16 Arabidopsis thaliana... 58 3e-006
gb|BP642404.1|BP642404 BP642404 RAFL19 Arabidopsis thaliana... 58 3e-006
gb|AF154272.1|AF154272 Arabidopsis thaliana PINHEAD (PINHEA... 58 3e-006
dbj|AB026651.1| Arabidopsis thaliana genomic DNA, chromosom... 58 3e-006
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 58 3e-006
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 58 3e-006
gb|AV547685.1|AV547685 AV547685 Arabidopsis thaliana roots ... 56 1e-005
gb|CK118552.1|CK118552 216l20.p1 AtM1 Arabidopsis thaliana ... 56 1e-005
emb|CR397125.1| Arabidopsis thaliana T-DNA flanking sequenc... 54 5e-005
gb|BP650636.1|BP650636 BP650636 RAFL19 Arabidopsis thaliana... 50 8e-004
gb|BP793539.1|BP793539 BP793539 RAFL7 Arabidopsis thaliana ... 50 8e-004
gb|BP610427.1|BP610427 BP610427 RAFL16 Arabidopsis thaliana... 48 0.003
gb|BP600427.1|BP600427 BP600427 RAFL16 Arabidopsis thaliana... 46 0.013
gb|BE521779.1|BE521779 M21E10XTM Arabidopsis developing see... 44 0.052
gb|AA651494.1|AA651494 31608 Lambda-PRL2 Arabidopsis thalia... 42 0.20
gb|BE520592.1|BE520592 M13F6XTM Arabidopsis developing seed... 42 0.20
gb|AV522776.1|AV522776 AV522776 Arabidopsis thaliana aboveg... 42 0.20
gb|AV546856.1|AV546856 AV546856 Arabidopsis thaliana roots ... 42 0.20
gb|AV547340.1|AV547340 AV547340 Arabidopsis thaliana roots ... 42 0.20
gb|AV547477.1|AV547477 AV547477 Arabidopsis thaliana roots ... 42 0.20
gb|AV547579.1|AV547579 AV547579 Arabidopsis thaliana roots ... 42 0.20
gb|BP599876.1|BP599876 BP599876 RAFL16 Arabidopsis thaliana... 42 0.20
gb|BP643817.1|BP643817 BP643817 RAFL19 Arabidopsis thaliana... 42 0.20
gb|BP778517.1|BP778517 BP778517 RAFL7 Arabidopsis thaliana ... 42 0.20
>gb|U91995.1|ATU91995 Arabidopsis thaliana Argonaute protein (AGO1) mRNA, complete cds
Length = 3473
Score = 258 bits (130), Expect = 2e-066
Identities = 438/541 (80%)
Strand = Plus / Plus
Query: 251 ctggtggcatgatcagggagcttctcatatctttctggagggcaactggacagaaaccaa 310
||||||||||||| | |||| | |||||| | ||| | || ||||||| || ||||||
Sbjct: 2582 ctggtggcatgataaaggagttgctcatagccttccgtagatcaactgggcataaaccac 2641
Query: 311 agaggatcatattctacagggatggcgtcagtgagggacaattctaccaagttctgttgt 370
|||||||| |||||||||||||| ||||||||||||||||| ||||||||| || | |
Sbjct: 2642 taaggatcatcttctacagggatggagtcagtgagggacaattttaccaagttttgctct 2701
Query: 371 atgaacttgatgccattagaaaggcctgtgcgtcattggagtctgactaccagcctccag 430
|||||||||||||||| | ||||||||||| || |||| | | || || || ||||
Sbjct: 2702 atgaacttgatgccatccgcaaggcctgtgcttcgctggaagcaggttatcaaccaccag 2761
Query: 431 ttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaataatcacaatg 490
| || ||||| ||||| ||| ||||||||||||| ||| |||||||| | || |||||||
Sbjct: 2762 tgacatttgtggtggtgcagaagcgtcatcacacgaggctgtttgctcagaaccacaatg 2821
Query: 491 ataatcgtgctgtcgataaaagcgggaacatactgcctggcactgtggtggactcgaaga 550
|| | | | || || | ||| ||||| || | ||||||||||| |||||||| || |
Sbjct: 2822 atcgccattcggtggacagaagtgggaatattttacctggcactgttgtggactctaaaa 2881
Query: 551 tctgccatccaactgagtttgatttctacctgtgcagccatgctggcattcagggaacaa 610
||||||| || || |||||||| || ||||| || || |||||||| |||||||| ||
Sbjct: 2882 tctgccaccctacagagtttgacttttacctctgtagtcatgctggtattcagggcactt 2941
Query: 611 gccgccctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgc 670
|| ||||| |||||||| ||||| |||||||||||||||||||| || ||||| | |
Sbjct: 2942 ctcgacctgctcattaccacgttctttgggatgagaacaactttactgcagatggacttc 3001
Query: 671 aaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattg 730
|| |||| ||||| ||||| |||||||||||||| || |||||||||||||| || ||||
Sbjct: 3002 aatctctgaccaataacttatgttacacgtatgcaagatgcacacgctcagtttcaattg 3061
Query: 731 ttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagccag 790
|||| |||||||| ||||| || || ||||| || | ||||| ||||||||||||||||
Sbjct: 3062 ttccccctgcatattatgcacatctagcagcttttagggctcgattctacatggagccag 3121
Query: 791 a 791
|
Sbjct: 3122 a 3122
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 3247 gtgaagcgtgtcatgttctactgct 3271
>gb|AY080690.1| Arabidopsis thaliana At1g48410 mRNA sequence
Length = 2764
Score = 258 bits (130), Expect = 2e-066
Identities = 438/541 (80%)
Strand = Plus / Plus
Query: 251 ctggtggcatgatcagggagcttctcatatctttctggagggcaactggacagaaaccaa 310
||||||||||||| | |||| | |||||| | ||| | || ||||||| || ||||||
Sbjct: 1854 ctggtggcatgataaaggagttgctcatagccttccgtagatcaactgggcataaaccac 1913
Query: 311 agaggatcatattctacagggatggcgtcagtgagggacaattctaccaagttctgttgt 370
|||||||| |||||||||||||| ||||||||||||||||| ||||||||| || | |
Sbjct: 1914 taaggatcatcttctacagggatggagtcagtgagggacaattttaccaagttttgctct 1973
Query: 371 atgaacttgatgccattagaaaggcctgtgcgtcattggagtctgactaccagcctccag 430
|||||||||||||||| | ||||||||||| || |||| | | || || || ||||
Sbjct: 1974 atgaacttgatgccatccgcaaggcctgtgcttcgctggaagcaggttatcaaccaccag 2033
Query: 431 ttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaataatcacaatg 490
| || ||||| ||||| ||| ||||||||||||| ||| |||||||| | || |||||||
Sbjct: 2034 tgacatttgtggtggtgcagaagcgtcatcacacgaggctgtttgctcagaaccacaatg 2093
Query: 491 ataatcgtgctgtcgataaaagcgggaacatactgcctggcactgtggtggactcgaaga 550
|| | | | || || | ||| ||||| || | ||||||||||| |||||||| || |
Sbjct: 2094 atcgccattcggtggacagaagtgggaatattttacctggcactgttgtggactctaaaa 2153
Query: 551 tctgccatccaactgagtttgatttctacctgtgcagccatgctggcattcagggaacaa 610
||||||| || || |||||||| || ||||| || || |||||||| |||||||| ||
Sbjct: 2154 tctgccaccctacagagtttgacttttacctctgtagtcatgctggtattcagggcactt 2213
Query: 611 gccgccctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgc 670
|| ||||| |||||||| ||||| |||||||||||||||||||| || ||||| | |
Sbjct: 2214 ctcgacctgctcattaccacgttctttgggatgagaacaactttactgcagatggacttc 2273
Query: 671 aaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattg 730
|| |||| ||||| ||||| |||||||||||||| || |||||||||||||| || ||||
Sbjct: 2274 aatctctgaccaataacttatgttacacgtatgcaagatgcacacgctcagtttcaattg 2333
Query: 731 ttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagccag 790
|||| |||||||| ||||| || || ||||| || | ||||| ||||||||||||||||
Sbjct: 2334 ttccccctgcatattatgcacatctagcagcttttagggctcgattctacatggagccag 2393
Query: 791 a 791
|
Sbjct: 2394 a 2394
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 2519 gtgaagcgtgtcatgttctactgct 2543
>gb|BT000941.1| Arabidopsis thaliana clone C105223 putative leaf development protein
Argonaute (At1g48410) mRNA, complete cds
Length = 3177
Score = 258 bits (130), Expect = 2e-066
Identities = 438/541 (80%)
Strand = Plus / Plus
Query: 251 ctggtggcatgatcagggagcttctcatatctttctggagggcaactggacagaaaccaa 310
||||||||||||| | |||| | |||||| | ||| | || ||||||| || ||||||
Sbjct: 2456 ctggtggcatgataaaggagttgctcatagccttccgtagatcaactgggcataaaccac 2515
Query: 311 agaggatcatattctacagggatggcgtcagtgagggacaattctaccaagttctgttgt 370
|||||||| |||||||||||||| ||||||||||||||||| ||||||||| || | |
Sbjct: 2516 taaggatcatcttctacagggatggagtcagtgagggacaattttaccaagttttgctct 2575
Query: 371 atgaacttgatgccattagaaaggcctgtgcgtcattggagtctgactaccagcctccag 430
|||||||||||||||| | ||||||||||| || |||| | | || || || ||||
Sbjct: 2576 atgaacttgatgccatccgcaaggcctgtgcttcgctggaagcaggttatcaaccaccag 2635
Query: 431 ttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaataatcacaatg 490
| || ||||| ||||| ||| ||||||||||||| ||| |||||||| | || |||||||
Sbjct: 2636 tgacatttgtggtggtgcagaagcgtcatcacacgaggctgtttgctcagaaccacaatg 2695
Query: 491 ataatcgtgctgtcgataaaagcgggaacatactgcctggcactgtggtggactcgaaga 550
|| | | | || || | ||| ||||| || | ||||||||||| |||||||| || |
Sbjct: 2696 atcgccattcggtggacagaagtgggaatattttacctggcactgttgtggactctaaaa 2755
Query: 551 tctgccatccaactgagtttgatttctacctgtgcagccatgctggcattcagggaacaa 610
||||||| || || |||||||| || ||||| || || |||||||| |||||||| ||
Sbjct: 2756 tctgccaccctacagagtttgacttttacctctgtagtcatgctggtattcagggcactt 2815
Query: 611 gccgccctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgc 670
|| ||||| |||||||| ||||| |||||||||||||||||||| || ||||| | |
Sbjct: 2816 ctcgacctgctcattaccacgttctttgggatgagaacaactttactgcagatggacttc 2875
Query: 671 aaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattg 730
|| |||| ||||| ||||| |||||||||||||| || |||||||||||||| || ||||
Sbjct: 2876 aatctctgaccaataacttatgttacacgtatgcaagatgcacacgctcagtttcaattg 2935
Query: 731 ttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagccag 790
|||| |||||||| ||||| || || ||||| || | ||||| ||||||||||||||||
Sbjct: 2936 ttccccctgcatattatgcacatctagcagcttttagggctcgattctacatggagccag 2995
Query: 791 a 791
|
Sbjct: 2996 a 2996
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 3121 gtgaagcgtgtcatgttctactgct 3145
>ref|NM_103737.2| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT1G48410 (AGO1) transcript
variant AT1G48410.1 mRNA, complete cds
Length = 3483
Score = 258 bits (130), Expect = 2e-066
Identities = 438/541 (80%)
Strand = Plus / Plus
Query: 251 ctggtggcatgatcagggagcttctcatatctttctggagggcaactggacagaaaccaa 310
||||||||||||| | |||| | |||||| | ||| | || ||||||| || ||||||
Sbjct: 2605 ctggtggcatgataaaggagttgctcatagccttccgtagatcaactgggcataaaccac 2664
Query: 311 agaggatcatattctacagggatggcgtcagtgagggacaattctaccaagttctgttgt 370
|||||||| |||||||||||||| ||||||||||||||||| ||||||||| || | |
Sbjct: 2665 taaggatcatcttctacagggatggagtcagtgagggacaattttaccaagttttgctct 2724
Query: 371 atgaacttgatgccattagaaaggcctgtgcgtcattggagtctgactaccagcctccag 430
|||||||||||||||| | ||||||||||| || |||| | | || || || ||||
Sbjct: 2725 atgaacttgatgccatccgcaaggcctgtgcttcgctggaagcaggttatcaaccaccag 2784
Query: 431 ttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaataatcacaatg 490
| || ||||| ||||| ||| ||||||||||||| ||| |||||||| | || |||||||
Sbjct: 2785 tgacatttgtggtggtgcagaagcgtcatcacacgaggctgtttgctcagaaccacaatg 2844
Query: 491 ataatcgtgctgtcgataaaagcgggaacatactgcctggcactgtggtggactcgaaga 550
|| | | | || || | ||| ||||| || | ||||||||||| |||||||| || |
Sbjct: 2845 atcgccattcggtggacagaagtgggaatattttacctggcactgttgtggactctaaaa 2904
Query: 551 tctgccatccaactgagtttgatttctacctgtgcagccatgctggcattcagggaacaa 610
||||||| || || |||||||| || ||||| || || |||||||| |||||||| ||
Sbjct: 2905 tctgccaccctacagagtttgacttttacctctgtagtcatgctggtattcagggcactt 2964
Query: 611 gccgccctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgc 670
|| ||||| |||||||| ||||| |||||||||||||||||||| || ||||| | |
Sbjct: 2965 ctcgacctgctcattaccacgttctttgggatgagaacaactttactgcagatggacttc 3024
Query: 671 aaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattg 730
|| |||| ||||| ||||| |||||||||||||| || |||||||||||||| || ||||
Sbjct: 3025 aatctctgaccaataacttatgttacacgtatgcaagatgcacacgctcagtttcaattg 3084
Query: 731 ttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagccag 790
|||| |||||||| ||||| || || ||||| || | ||||| ||||||||||||||||
Sbjct: 3085 ttccccctgcatattatgcacatctagcagcttttagggctcgattctacatggagccag 3144
Query: 791 a 791
|
Sbjct: 3145 a 3145
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 3270 gtgaagcgtgtcatgttctactgct 3294
>ref|NM_179453.1| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT1G48410 (AGO1) transcript
variant AT1G48410.2 mRNA, complete cds
Length = 3489
Score = 258 bits (130), Expect = 2e-066
Identities = 438/541 (80%)
Strand = Plus / Plus
Query: 251 ctggtggcatgatcagggagcttctcatatctttctggagggcaactggacagaaaccaa 310
||||||||||||| | |||| | |||||| | ||| | || ||||||| || ||||||
Sbjct: 2611 ctggtggcatgataaaggagttgctcatagccttccgtagatcaactgggcataaaccac 2670
Query: 311 agaggatcatattctacagggatggcgtcagtgagggacaattctaccaagttctgttgt 370
|||||||| |||||||||||||| ||||||||||||||||| ||||||||| || | |
Sbjct: 2671 taaggatcatcttctacagggatggagtcagtgagggacaattttaccaagttttgctct 2730
Query: 371 atgaacttgatgccattagaaaggcctgtgcgtcattggagtctgactaccagcctccag 430
|||||||||||||||| | ||||||||||| || |||| | | || || || ||||
Sbjct: 2731 atgaacttgatgccatccgcaaggcctgtgcttcgctggaagcaggttatcaaccaccag 2790
Query: 431 ttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaataatcacaatg 490
| || ||||| ||||| ||| ||||||||||||| ||| |||||||| | || |||||||
Sbjct: 2791 tgacatttgtggtggtgcagaagcgtcatcacacgaggctgtttgctcagaaccacaatg 2850
Query: 491 ataatcgtgctgtcgataaaagcgggaacatactgcctggcactgtggtggactcgaaga 550
|| | | | || || | ||| ||||| || | ||||||||||| |||||||| || |
Sbjct: 2851 atcgccattcggtggacagaagtgggaatattttacctggcactgttgtggactctaaaa 2910
Query: 551 tctgccatccaactgagtttgatttctacctgtgcagccatgctggcattcagggaacaa 610
||||||| || || |||||||| || ||||| || || |||||||| |||||||| ||
Sbjct: 2911 tctgccaccctacagagtttgacttttacctctgtagtcatgctggtattcagggcactt 2970
Query: 611 gccgccctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgc 670
|| ||||| |||||||| ||||| |||||||||||||||||||| || ||||| | |
Sbjct: 2971 ctcgacctgctcattaccacgttctttgggatgagaacaactttactgcagatggacttc 3030
Query: 671 aaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattg 730
|| |||| ||||| ||||| |||||||||||||| || |||||||||||||| || ||||
Sbjct: 3031 aatctctgaccaataacttatgttacacgtatgcaagatgcacacgctcagtttcaattg 3090
Query: 731 ttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagccag 790
|||| |||||||| ||||| || || ||||| || | ||||| ||||||||||||||||
Sbjct: 3091 ttccccctgcatattatgcacatctagcagcttttagggctcgattctacatggagccag 3150
Query: 791 a 791
|
Sbjct: 3151 a 3151
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 3276 gtgaagcgtgtcatgttctactgct 3300
>gb|CK119358.1|CK119358 212p13.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011P13212
5-PRIME, mRNA sequence
Length = 775
Score = 252 bits (127), Expect = 1e-064
Identities = 390/478 (81%)
Strand = Plus / Plus
Query: 314 ggatcatattctacagggatggcgtcagtgagggacaattctaccaagttctgttgtatg 373
||||||| |||||||||||||| ||||||||||||||||| ||||||||| || | ||||
Sbjct: 1 ggatcatcttctacagggatggagtcagtgagggacaattttaccaagttttgctctatg 60
Query: 374 aacttgatgccattagaaaggcctgtgcgtcattggagtctgactaccagcctccagtta 433
||||||||||||| | ||||||||||| || |||| | | || || || ||||| |
Sbjct: 61 aacttgatgccatccgcaaggcctgtgcttcgctggaagcaggttatcaaccaccagtga 120
Query: 434 cttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaataatcacaatgata 493
| ||||| ||||| ||| ||||||||||||| ||| |||||||| | || |||||||||
Sbjct: 121 catttgtggtggtgcagaagcgtcatcacacgaggctgtttgctcagaaccacaatgatc 180
Query: 494 atcgtgctgtcgataaaagcgggaacatactgcctggcactgtggtggactcgaagatct 553
| | | || || | ||| ||||| || | ||||||||||| |||||||| || ||||
Sbjct: 181 gccattcggtggacagaagtgggaatattttacctggcactgttgtggactctaaaatct 240
Query: 554 gccatccaactgagtttgatttctacctgtgcagccatgctggcattcagggaacaagcc 613
|||| || || |||||||| || ||||| || || |||||||| |||||||| || |
Sbjct: 241 gccaccctacagagtttgacttttacctctgtagtcatgctggtattcagggcacttctc 300
Query: 614 gccctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaa 673
| ||||| |||||||| ||||| |||||||||||||||||||| || ||||| | |||
Sbjct: 301 gacctgctcattaccacgttctttgggatgagaacaactttactgcagatggacttcaat 360
Query: 674 ctctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttc 733
|||| ||||| ||||| |||||||||||||| || |||||||||||||| || |||||||
Sbjct: 361 ctctgaccaataacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttc 420
Query: 734 ctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagccaga 791
| |||||||| ||||| || || ||||| || | ||||| |||||||||||||||||
Sbjct: 421 cccctgcatattatgcacatctagcagcttttagggctcgattctacatggagccaga 478
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 603 gtgaagcgtgtcatgttctactgct 627
>gb|AV441187.1|AV441187 AV441187 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APZ31g03_f 3', mRNA
sequence
Length = 607
Score = 178 bits (90), Expect = 1e-042
Identities = 222/266 (83%)
Strand = Plus / Minus
Query: 526 cctggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgc 585
||||||||||| |||||||| || |||||||| || || |||||||| || ||||| ||
Sbjct: 534 cctggcactgttgtggactctaaaatctgccaccctacagagtttgacttttacctctgt 475
Query: 586 agccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtgggatgag 645
|| |||||||| |||||||| || || ||||| |||||||| ||||| |||||||||
Sbjct: 474 agtcatgctggtattcagggcacttctcgacctgctcattaccacgttctttgggatgag 415
Query: 646 aacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgtatgct 705
||||||||||| || ||||| | ||| |||| ||||| ||||| ||||||||||||||
Sbjct: 414 aacaactttactgcagatggacttcaatctctgaccaataacttatgttacacgtatgca 355
Query: 706 aggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagccttc 765
|| |||||||||||||| || |||||||| |||||||| ||||| || || ||||| ||
Sbjct: 354 agatgcacacgctcagtttcaattgttccccctgcatattatgcacatctagcagctttt 295
Query: 766 cgagctcggttctacatggagccaga 791
| ||||| |||||||||||||||||
Sbjct: 294 agggctcgattctacatggagccaga 269
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 144 gtgaagcgtgtcatgttctactgct 120
>gb|AV545970.1|AV545970 AV545970 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL06e02F 3', mRNA sequence
Length = 575
Score = 178 bits (90), Expect = 1e-042
Identities = 222/266 (83%)
Strand = Plus / Minus
Query: 526 cctggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgc 585
||||||||||| |||||||| || |||||||| || || |||||||| || ||||| ||
Sbjct: 545 cctggcactgttgtggactctaaaatctgccaccctacagagtttgacttttacctctgt 486
Query: 586 agccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtgggatgag 645
|| |||||||| |||||||| || || ||||| |||||||| ||||| |||||||||
Sbjct: 485 agtcatgctggtattcagggcacttctcgacctgctcattaccacgttctttgggatgag 426
Query: 646 aacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgtatgct 705
||||||||||| || ||||| | ||| |||| ||||| ||||| ||||||||||||||
Sbjct: 425 aacaactttactgcagatggacttcaatctctgaccaataacttatgttacacgtatgca 366
Query: 706 aggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagccttc 765
|| |||||||||||||| || |||||||| |||||||| ||||| || || ||||| ||
Sbjct: 365 agatgcacacgctcagtttcaattgttccccctgcatattatgcacatctagcagctttt 306
Query: 766 cgagctcggttctacatggagccaga 791
| ||||| |||||||||||||||||
Sbjct: 305 agggctcgattctacatggagccaga 280
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 155 gtgaagcgtgtcatgttctactgct 131
>gb|AV563657.1|AV563657 AV563657 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ191b06F 3', mRNA sequence
Length = 601
Score = 178 bits (90), Expect = 1e-042
Identities = 222/266 (83%)
Strand = Plus / Minus
Query: 526 cctggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgc 585
||||||||||| |||||||| || |||||||| || || |||||||| || ||||| ||
Sbjct: 545 cctggcactgttgtggactctaaaatctgccaccctacagagtttgacttttacctctgt 486
Query: 586 agccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtgggatgag 645
|| |||||||| |||||||| || || ||||| |||||||| ||||| |||||||||
Sbjct: 485 agtcatgctggtattcagggcacttctcgacctgctcattaccacgttctttgggatgag 426
Query: 646 aacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgtatgct 705
||||||||||| || ||||| | ||| |||| ||||| ||||| ||||||||||||||
Sbjct: 425 aacaactttactgcagatggacttcaatctctgaccaataacttatgttacacgtatgca 366
Query: 706 aggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagccttc 765
|| |||||||||||||| || |||||||| |||||||| ||||| || || ||||| ||
Sbjct: 365 agatgcacacgctcagtttcaattgttccccctgcatattatgcacatctagcagctttt 306
Query: 766 cgagctcggttctacatggagccaga 791
| ||||| |||||||||||||||||
Sbjct: 305 agggctcgattctacatggagccaga 280
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 155 gtgaagcgtgtcatgttctactgct 131
>gb|AV523806.1|AV523806 AV523806 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL40f03F 3', mRNA
sequence
Length = 447
Score = 176 bits (89), Expect = 5e-042
Identities = 289/356 (81%)
Strand = Plus / Minus
Query: 436 tttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaataatcacaatgataat 495
||||| ||||| ||| ||||||||||||| ||| |||||||| | || |||||||||
Sbjct: 441 tttgtggtggtgcagaagcgtcatcacacgaggctgtttgctcagaaccacaatgatcgc 382
Query: 496 cgtgctgtcgataaaagcgggaacatactgcctggcactgtggtggactcgaagatctgc 555
| | | || || | ||| ||||| || | ||||||||||| |||||||| || ||||||
Sbjct: 381 cattcggtggacagaagtgggaatattttacctggcactgttgtggactctaaaatctgc 322
Query: 556 catccaactgagtttgatttctacctgtgcagccatgctggcattcagggaacaagccgc 615
|| | || |||||||| || ||||| || || |||||||| |||||||| || ||
Sbjct: 321 caccgtacagagtttgacttttacctctgtagtcatgctggtattcagggcacttctcga 262
Query: 616 cctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaact 675
||||| |||||||| ||||| |||||||||||||||||||| || ||||| | ||| ||
Sbjct: 261 cctgctcattaccacgttctttgggatgagaacaactttactgcagatggacttcaatct 202
Query: 676 ctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcct 735
|| ||||| ||||| |||||||||||||| || |||||||||||||| || ||||||||
Sbjct: 201 ctgaccaataacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccc 142
Query: 736 cctgcatactatgctcacctggcagccttccgagctcggttctacatggagccaga 791
|||||||| ||||| || || ||||| || | ||||| |||||||||||||||||
Sbjct: 141 cctgcatattatgcacatctagcagcttttagggctcgattctacatggagccaga 86
>gb|BE523184.1|BE523184 M35A4STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M35A4 5', mRNA sequence
Length = 394
Score = 170 bits (86), Expect = 3e-040
Identities = 286/353 (81%)
Strand = Plus / Plus
Query: 313 aggatcatattctacagggatggcgtcagtgagggacaattctaccaagttctgttgtat 372
|||||||| |||||||||||||| ||||||||||||||||| ||||||||| || | |||
Sbjct: 19 aggatcatcttctacagggatggagtcagtgagggacaattttaccaagttttgctctat 78
Query: 373 gaacttgatgccattagaaaggcctgtgcgtcattggagtctgactaccagcctccagtt 432
|||||||||||||| | ||||||||||| || |||| | | || || || |||||
Sbjct: 79 gaacttgatgccatccgcaaggcctgtgcttcgctggaagcaggttatcaaccaccagtg 138
Query: 433 acttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaataatcacaatgat 492
|| ||||| ||||| ||| ||||||||||||| ||| |||||||| | || |||||||||
Sbjct: 139 acatttgtggtggtgcagaagcgtcatcacacgaggctgtttgctcagaaccacaatgat 198
Query: 493 aatcgtgctgtcgataaaagcgggaacatactgcctggcactgtggtggactcgaagatc 552
| | | || || | ||| ||||| || | ||||||||||| |||||||| || |||
Sbjct: 199 cgccattcggtggacagaagtgggaatattttacctggcactgttgtggactctaaaatc 258
Query: 553 tgccatccaactgagtttgatttctacctgtgcagccatgctggcattcagggaacaagc 612
||||| || || |||||||| || ||||| || || |||||||| |||||||| ||
Sbjct: 259 tgccaccctacagagtttgacttttacctctgtagtcatgctggtattcagggcacttct 318
Query: 613 cgccctgcccattaccatgttctgtgggatgagaacaactttacggctgatgg 665
|| ||||| |||||||| ||||| |||||||||||||||||||| || |||||
Sbjct: 319 cgacctgctcattaccacgttctttgggatgagaacaactttactgcagatgg 371
>emb|BX815116.1|CNS0AAU5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS34ZG07 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 3188
Score = 170 bits (86), Expect = 3e-040
Identities = 221/266 (83%)
Strand = Plus / Plus
Query: 526 cctggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgc 585
||||||||||| |||||||| || |||||||| || || |||||||| || ||||| ||
Sbjct: 2607 cctggcactgttgtggactctaaaatctgccaccctacagagtttgacttttacctctgt 2666
Query: 586 agccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtgggatgag 645
|| |||||||| |||||||| || || ||||| |||||||| ||||| |||||||||
Sbjct: 2667 agtcatgctggtattcagggcacttctcgacctgctcattaccacgttctttgggatgag 2726
Query: 646 aacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgtatgct 705
||||||||||| || ||||| | ||| |||| ||||| ||||| ||||||||||||||
Sbjct: 2727 aacaactttactgcagatggacttcaatctctgaccaataacttatgttacacgtatgca 2786
Query: 706 aggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagccttc 765
|| |||||||||||||| || |||||||| |||||||| ||||| || || ||||| |
Sbjct: 2787 agatgcacacgctcagtttcaattgttccccctgcatattatgcacatctagcagctctt 2846
Query: 766 cgagctcggttctacatggagccaga 791
| ||||| |||||||||||||||||
Sbjct: 2847 agggctcgattctacatggagccaga 2872
Score = 107 bits (54), Expect = 4e-021
Identities = 126/150 (84%)
Strand = Plus / Plus
Query: 251 ctggtggcatgatcagggagcttctcatatctttctggagggcaactggacagaaaccaa 310
||||||||||||| | |||| | |||||| | ||| | || ||||||| || ||||||
Sbjct: 2331 ctggtggcatgataaaggagttgctcatagccttccgtagatcaactgggcataaaccac 2390
Query: 311 agaggatcatattctacagggatggcgtcagtgagggacaattctaccaagttctgttgt 370
|||||||| |||||||||||||| ||||||||||||||||| ||||||||| || | |
Sbjct: 2391 taaggatcatcttctacagggatggagtcagtgagggacaattttaccaagttttgctct 2450
Query: 371 atgaacttgatgccattagaaaggcctgtg 400
|||||||||||||||| | ||||||||||
Sbjct: 2451 atgaacttgatgccatccgcaaggcctgtg 2480
Score = 54.0 bits (27), Expect = 5e-005
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 427 ccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaataatcac 486
||||| || ||||| ||||| ||| ||||||||||||| ||| |||||||| | || |||
Sbjct: 2506 ccagtgacatttgtggtggtgcagaagcgtcatcacacgaggctgtttgctcagaaccac 2565
Query: 487 aatgat 492
||||||
Sbjct: 2566 aatgat 2571
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 2997 gtgaagcgtgtcatgttctactgct 3021
>emb|BX818680.1|CNS0ACI7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL91ZD02 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 728
Score = 170 bits (86), Expect = 3e-040
Identities = 221/266 (83%)
Strand = Plus / Plus
Query: 526 cctggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgc 585
||||||||||| |||||||| || |||||||| || || |||||||| || ||||| ||
Sbjct: 136 cctggcactgttgtggactctaaaatctgccaccctacagagtttgacttttacctctgt 195
Query: 586 agccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtgggatgag 645
|| || ||||| |||||||| || || ||||| |||||||| ||||| |||||||||
Sbjct: 196 agtcacgctggtattcagggcacttctcgacctgctcattaccacgttctttgggatgag 255
Query: 646 aacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgtatgct 705
||||||||||| || ||||| | ||| |||| ||||| ||||| ||||||||||||||
Sbjct: 256 aacaactttactgcagatggacttcaatctctgaccaataacttatgttacacgtatgca 315
Query: 706 aggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagccttc 765
|| |||||||||||||| || |||||||| |||||||| ||||| || || ||||| ||
Sbjct: 316 agatgcacacgctcagtttcaattgttccccctgcatattatgcacatctagcagctttt 375
Query: 766 cgagctcggttctacatggagccaga 791
| ||||| |||||||||||||||||
Sbjct: 376 agggctcgattctacatggagccaga 401
Score = 61.9 bits (31), Expect = 2e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 427 ccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaataatcac 486
|||||||| ||||| ||||| ||| ||||||||||||| ||| |||||||| | || |||
Sbjct: 36 ccagttacatttgtggtggtgcagaagcgtcatcacacgaggctgtttgctcagaaccac 95
Query: 487 aatgat 492
||||||
Sbjct: 96 aatgat 101
>gb|AV529891.1|AV529891 AV529891 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL51c02R 5', mRNA
sequence
Length = 528
Score = 143 bits (72), Expect = 8e-032
Identities = 150/176 (85%)
Strand = Plus / Minus
Query: 616 cctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaact 675
||||| |||||||| ||||| |||||||||||||||||||| || ||||| | ||| ||
Sbjct: 507 cctgctcattaccacgttctttgggatgagaacaactttactgcagatggacttcaatct 448
Query: 676 ctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcct 735
|| ||||| ||||| |||||||||||||| || |||||||||||||| || ||||||||
Sbjct: 447 ctgaccaataacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccc 388
Query: 736 cctgcatactatgctcacctggcagccttccgagctcggttctacatggagccaga 791
|||||||| ||||| || || ||||| || | ||||| |||||||||||||||||
Sbjct: 387 cctgcatattatgcacatctagcagcttttagggctcgattctacatggagccaga 332
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 207 gtgaagcgtgtcatgttctactgct 183
>gb|AV548086.1|AV548086 AV548086 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL46g10F 3', mRNA sequence
Length = 511
Score = 143 bits (72), Expect = 8e-032
Identities = 150/176 (85%)
Strand = Plus / Minus
Query: 616 cctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaact 675
||||| |||||||| ||||| |||||||||||||||||||| || ||||| | ||| ||
Sbjct: 502 cctgctcattaccacgttctttgggatgagaacaactttactgcagatggacttcaatct 443
Query: 676 ctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcct 735
|| ||||| ||||| |||||||||||||| || |||||||||||||| || ||||||||
Sbjct: 442 ctgaccaataacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccc 383
Query: 736 cctgcatactatgctcacctggcagccttccgagctcggttctacatggagccaga 791
|||||||| ||||| || || ||||| || | ||||| |||||||||||||||||
Sbjct: 382 cctgcatattatgcacatctagcagcttttagggctcgattctacatggagccaga 327
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 202 gtgaagcgtgtcatgttctactgct 178
>gb|AV548172.1|AV548172 AV548172 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL48g02F 3', mRNA sequence
Length = 540
Score = 143 bits (72), Expect = 8e-032
Identities = 150/176 (85%)
Strand = Plus / Minus
Query: 616 cctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaact 675
||||| |||||||| ||||| |||||||||||||||||||| || ||||| | ||| ||
Sbjct: 505 cctgctcattaccacgttctttgggatgagaacaactttactgcagatggacttcaatct 446
Query: 676 ctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcct 735
|| ||||| ||||| |||||||||||||| || |||||||||||||| || ||||||||
Sbjct: 445 ctgaccaataacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccc 386
Query: 736 cctgcatactatgctcacctggcagccttccgagctcggttctacatggagccaga 791
|||||||| ||||| || || ||||| || | ||||| |||||||||||||||||
Sbjct: 385 cctgcatattatgcacatctagcagcttttagggctcgattctacatggagccaga 330
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 205 gtgaagcgtgtcatgttctactgct 181
>gb|AY600524.1| Arabidopsis thaliana hypothetical protein (At1g48405) mRNA,
complete cds
Length = 1462
Score = 143 bits (72), Expect = 8e-032
Identities = 150/176 (85%)
Strand = Plus / Plus
Query: 616 cctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaact 675
||||| |||||||| ||||| |||||||||||||||||||| || ||||| | ||| ||
Sbjct: 6 cctgctcattaccacgttctttgggatgagaacaactttactgcagatggacttcaatct 65
Query: 676 ctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcct 735
|| ||||| ||||| |||||||||||||| || |||||||||||||| || ||||||||
Sbjct: 66 ctgaccaataacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccc 125
Query: 736 cctgcatactatgctcacctggcagccttccgagctcggttctacatggagccaga 791
|||||||| ||||| || || ||||| || | ||||| |||||||||||||||||
Sbjct: 126 cctgcatattatgcacatctagcagcttttagggctcgattctacatggagccaga 181
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 306 gtgaagcgtgtcatgttctactgct 330
>gb|AV560716.1|AV560716 AV560716 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ139e07F 3', mRNA sequence
Length = 505
Score = 141 bits (71), Expect = 3e-031
Identities = 149/175 (85%)
Strand = Plus / Minus
Query: 617 ctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaactc 676
|||| |||||||| ||||| |||||||||||||||||||| || ||||| | ||| |||
Sbjct: 505 ctgctcattaccacgttctttgggatgagaacaactttactgcagatggacttcaatctc 446
Query: 677 tcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctc 736
| ||||| ||||| |||||||||||||| || |||||||||||||| || |||||||| |
Sbjct: 445 tgaccaataacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttcccc 386
Query: 737 ctgcatactatgctcacctggcagccttccgagctcggttctacatggagccaga 791
||||||| ||||| || || ||||| || | ||||| |||||||||||||||||
Sbjct: 385 ctgcatattatgcacatctagcagcttttagggctcgattctacatggagccaga 331
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 206 gtgaagcgtgtcatgttctactgct 182
>gb|AV532952.1|AV532952 AV532952 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB053a03F 3', mRNA sequence
Length = 507
Score = 139 bits (70), Expect = 1e-030
Identities = 145/170 (85%)
Strand = Plus / Minus
Query: 622 cattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaactctcacc 681
|||||||| ||||| |||||||||||||||||||| || ||||| | ||| |||| |||
Sbjct: 503 cattaccacgttctttgggatgagaacaactttactgcagatggacttcaatctctgacc 444
Query: 682 aacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgca 741
|| ||||| |||||||||||||| || |||||||||||||| || |||||||| ||||||
Sbjct: 443 aataacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccctgca 384
Query: 742 tactatgctcacctggcagccttccgagctcggttctacatggagccaga 791
|| ||||| || || ||||| || | ||||| |||||||||||||||||
Sbjct: 383 tattatgcacatctagcagcttttagggctcgattctacatggagccaga 334
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 209 gtgaagcgtgtcatgttctactgct 185
>gb|AV534003.1|AV534003 AV534003 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB072b01F 3', mRNA sequence
Length = 512
Score = 139 bits (70), Expect = 1e-030
Identities = 145/170 (85%)
Strand = Plus / Minus
Query: 622 cattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaactctcacc 681
|||||||| ||||| |||||||||||||||||||| || ||||| | ||| |||| |||
Sbjct: 508 cattaccacgttctttgggatgagaacaactttactgcagatggacttcaatctctgacc 449
Query: 682 aacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgca 741
|| ||||| |||||||||||||| || |||||||||||||| || |||||||| ||||||
Sbjct: 448 aataacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccctgca 389
Query: 742 tactatgctcacctggcagccttccgagctcggttctacatggagccaga 791
|| ||||| || || ||||| || | ||||| |||||||||||||||||
Sbjct: 388 tattatgcacatctagcagcttttagggctcgattctacatggagccaga 339
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 214 gtgaagcgtgtcatgttctactgct 190
>gb|BP795190.1|BP795190 BP795190 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-64-A11 3',
mRNA sequence
Length = 499
Score = 129 bits (65), Expect = 1e-027
Identities = 137/161 (85%)
Strand = Plus / Minus
Query: 631 gttctgtgggatgagaacaactttacggctgatgggttgcaaactctcaccaacaacttg 690
||||| |||||||||||||||||||| || ||||| | ||| |||| ||||| |||||
Sbjct: 496 gttctttgggatgagaacaactttactgcagatggacttcaatctctgaccaataactta 437
Query: 691 tgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatactatgct 750
|||||||||||||| || |||||||||||||| || |||||||| |||||||| |||||
Sbjct: 436 tgttacacgtatgcaagatgcacacgctcagtttcaattgttccccctgcatattatgca 377
Query: 751 cacctggcagccttccgagctcggttctacatggagccaga 791
|| || ||||| || | ||||| |||||||||||||||||
Sbjct: 376 catctagcagcttttagggctcgattctacatggagccaga 336
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 211 gtgaagcgtgtcatgttctactgct 187
>gb|CK121100.1|CK121100 204j21.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011J21204
5-PRIME, mRNA sequence
Length = 777
Score = 125 bits (63), Expect = 2e-026
Identities = 197/242 (81%)
Strand = Plus / Plus
Query: 251 ctggtggcatgatcagggagcttctcatatctttctggagggcaactggacagaaaccaa 310
||||||||||||| | |||| | |||||| | ||| | || ||||||| || ||||||
Sbjct: 430 ctggtggcatgataaaggagttgctcatagccttccgtagatcaactgggcataaaccac 489
Query: 311 agaggatcatattctacagggatggcgtcagtgagggacaattctaccaagttctgttgt 370
|||||||| |||||||||||||| ||||||||||||||||| ||||||||| || | |
Sbjct: 490 taaggatcatcttctacagggatggagtcagtgagggacaattttaccaagttttgctct 549
Query: 371 atgaacttgatgccattagaaaggcctgtgcgtcattggagtctgactaccagcctccag 430
|||||||||||||||| | ||||||||||| || |||| | | || || || ||||
Sbjct: 550 atgaacttgatgccatccgcaaggcctgtgcttcgctggaagcaggttatcaaccaccag 609
Query: 431 ttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaataatcacaatg 490
| || ||||| ||||| ||| ||||||||||||| ||| |||||||| | || |||||||
Sbjct: 610 tgacatttgtggtggtgcagaagcgtcatcacacgaggctgtttgctcagaaccacaatg 669
Query: 491 at 492
||
Sbjct: 670 at 671
>gb|AI993691.1|AI993691 701497176 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701497176, mRNA sequence
Length = 481
Score = 119 bits (60), Expect = 1e-024
Identities = 196/242 (80%)
Strand = Plus / Plus
Query: 251 ctggtggcatgatcagggagcttctcatatctttctggagggcaactggacagaaaccaa 310
||||||||||||| | |||| | |||||| | ||| | || ||||||| || ||||||
Sbjct: 235 ctggtggcatgataaaggagttgctcatagccttccgtagatcaactgggcataaaccac 294
Query: 311 agaggatcatattctacagggatggcgtcagtgagggacaattctaccaagttctgttgt 370
|||||||| |||||||||||||| ||||||||||||||||| ||||||||| || | |
Sbjct: 295 taaggatcatcttctacagggatggagtcagtgagggacaattttaccaagttttgctct 354
Query: 371 atgaacttgatgccattagaaaggcctgtgcgtcattggagtctgactaccagcctccag 430
|||||||||||||||| | ||||||||||| || ||| | | || || || ||||
Sbjct: 355 atgaacttgatgccatccgcaaggcctgtgcttcgctggnaacaggttatcaaccaccag 414
Query: 431 ttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaataatcacaatg 490
| || ||||| ||||| ||| ||||||||||||| ||| |||||||| | || |||||||
Sbjct: 415 tgacatttgtggtggtgcagaagcgtcatcacacgaggctgtttgctcagaaccacaatg 474
Query: 491 at 492
||
Sbjct: 475 at 476
>gb|BP618364.1|BP618364 BP618364 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-28-A09 3',
mRNA sequence
Length = 445
Score = 119 bits (60), Expect = 1e-024
Identities = 135/160 (84%)
Strand = Plus / Minus
Query: 624 ttaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaactctcaccaa 683
|||||| ||||| |||||||||||||||||||| || ||||| | ||| |||| |||||
Sbjct: 445 ttaccacgttctttgggatgagaacaactttactgcagatggacttcaatctctgaccaa 386
Query: 684 caacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcata 743
||||| |||||||||||||| || |||||||||||||| || |||||||| ||||||||
Sbjct: 385 taacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccctgcata 326
Query: 744 ctatgctcacctggcagccttccgagctcggttctacatg 783
||||| || || ||||| || | ||||| |||||||||
Sbjct: 325 ttatgcacatctagcagcttttagggctcgattctacatg 286
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 157 gtgaagcgtgtcatgttctactgct 133
>gb|BP619936.1|BP619936 BP619936 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-35-C16 3',
mRNA sequence
Length = 431
Score = 115 bits (58), Expect = 2e-023
Identities = 127/150 (84%)
Strand = Plus / Minus
Query: 642 tgagaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgta 701
||||||||||||||| || ||||| | ||| |||| ||||| ||||| |||||||||||
Sbjct: 431 tgagaacaactttactgcagatggacttcaatctctgaccaataacttatgttacacgta 372
Query: 702 tgctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagc 761
||| || |||||||||||||| || |||||||| |||||||| ||||| || || |||||
Sbjct: 371 tgcaagatgcacacgctcagtttcaattgttccccctgcatattatgcacatctagcagc 312
Query: 762 cttccgagctcggttctacatggagccaga 791
|| | ||||| |||||||||||||||||
Sbjct: 311 ttttagggctcgattctacatggagccaga 282
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 157 gtgaagcgtgtcatgttctactgct 133
>gb|AV442417.1|AV442417 AV442417 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APZ31g03_r 5', mRNA
sequence
Length = 393
Score = 105 bits (53), Expect = 2e-020
Identities = 80/89 (89%)
Strand = Plus / Plus
Query: 313 aggatcatattctacagggatggcgtcagtgagggacaattctaccaagttctgttgtat 372
|||||||| |||||||||||||| ||||||||||||||||| ||||||||| || | |||
Sbjct: 291 aggatcatcttctacagggatggagtcagtgagggacaattttaccaagttttgctctat 350
Query: 373 gaacttgatgccattagaaaggcctgtgc 401
|||||||||||||| | |||||||||||
Sbjct: 351 gaacttgatgccatccgcaaggcctgtgc 379
>gb|CB260762.1|CB260762 67-E009520-012-003-F21-T7R MPIZ-ADIS-012 Arabidopsis thaliana cDNA
clone MPIZp769F213Q 5-PRIME, mRNA sequence
Length = 532
Score = 99.6 bits (50), Expect = 1e-018
Identities = 185/230 (80%)
Strand = Plus / Plus
Query: 556 catccaactgagtttgatttctacctgtgcagccatgctggcattcagggaacaagccgc 615
||||||||||| || || |||||||| || |||||||| || ||||||||||||||| |
Sbjct: 222 catccaactgaattcgacttctacctttgtagccatgcgggtattcagggaacaagcagg 281
Query: 616 cctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaact 675
||||| |||||||||||||| ||||| |||||||| || || || ||||| | ||| ||
Sbjct: 282 cctgcacattaccatgttctttgggacgagaacaatttcacagcagatggtattcaatct 341
Query: 676 ctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcct 735
|| || ||||| | ||||| || ||||| ||||||| || || || || || ||||||
Sbjct: 342 ctgactaacaatctctgttatacctatgcgcggtgcactcggtcggtctctatagttcct 401
Query: 736 cctgcatactatgctcacctggcagccttccgagctcggttctacatgga 785
|| || || |||||||| || ||||| || ||||| || |||||| ||||
Sbjct: 402 ccagcgtattatgctcatcttgcagcatttcgagcacgtttctacctgga 451
>gb|BP640077.1|BP640077 BP640077 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-50-E21 3',
mRNA sequence
Length = 404
Score = 99.6 bits (50), Expect = 1e-018
Identities = 101/118 (85%)
Strand = Plus / Minus
Query: 674 ctctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttc 733
|||| ||||| ||||| |||||||||||||| || |||||||||||||| || |||||||
Sbjct: 398 ctctgaccaataacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttc 339
Query: 734 ctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagccaga 791
| |||||||| ||||| || || ||||| || | ||||| |||||||||||||||||
Sbjct: 338 cccctgcatattatgcacatctagcagcttttagggctcgattctacatggagccaga 281
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 156 gtgaagcgtgtcatgttctactgct 132
>emb|AJ223508.1|ART223508 Arabidopsis thaliana mRNA for Zwille protein
Length = 3323
Score = 99.6 bits (50), Expect = 1e-018
Identities = 185/230 (80%)
Strand = Plus / Plus
Query: 556 catccaactgagtttgatttctacctgtgcagccatgctggcattcagggaacaagccgc 615
||||||||||| || || |||||||| || |||||||| || ||||||||||||||| |
Sbjct: 2736 catccaactgaattcgacttctacctttgtagccatgcgggtattcagggaacaagcagg 2795
Query: 616 cctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaact 675
||||| |||||||||||||| ||||| |||||||| || || || ||||| | ||| ||
Sbjct: 2796 cctgcacattaccatgttctttgggacgagaacaatttcacagcagatggtattcaatct 2855
Query: 676 ctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcct 735
|| || ||||| | ||||| || ||||| ||||||| || || || || || ||||||
Sbjct: 2856 ctgactaacaatctctgttatacctatgcgcggtgcactcggtcggtctctatagttcct 2915
Query: 736 cctgcatactatgctcacctggcagccttccgagctcggttctacatgga 785
|| || || |||||||| || ||||| || ||||| || |||||| ||||
Sbjct: 2916 ccagcgtattatgctcatcttgcagcatttcgagcacgtttctacctgga 2965
Score = 56.0 bits (28), Expect = 1e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 94 ggggaagattctagtccttccattgcagctgtggttgcttttcaagactggcctgaggtt 153
|||||||| || || ||||| || || ||||| ||||||| ||||||||||||||| ||
Sbjct: 2274 ggggaagagtcaagcccttcaatcgctgctgttgttgcttctcaagactggcctgaagtg 2333
Query: 154 acaaagtatgcaggattggtgagtgctcaagc 185
||||| ||||| || || || ||||||||||
Sbjct: 2334 acaaaatatgcgggtttagtttgtgctcaagc 2365
>emb|AX505737.1| Sequence 432 from Patent WO0216655
Length = 2967
Score = 99.6 bits (50), Expect = 1e-018
Identities = 185/230 (80%)
Strand = Plus / Plus
Query: 556 catccaactgagtttgatttctacctgtgcagccatgctggcattcagggaacaagccgc 615
||||||||||| || || |||||||| || |||||||| || ||||||||||||||| |
Sbjct: 2608 catccaactgaattcgacttctacctttgtagccatgcgggtattcagggaacaagcagg 2667
Query: 616 cctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaact 675
||||| |||||||||||||| ||||| |||||||| || || || ||||| | ||| ||
Sbjct: 2668 cctgcacattaccatgttctttgggacgagaacaatttcacagcagatggtattcaatct 2727
Query: 676 ctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcct 735
|| || ||||| | ||||| || ||||| ||||||| || || || || || ||||||
Sbjct: 2728 ctgactaacaatctctgttatacctatgcgcggtgcactcggtcggtctctatagttcct 2787
Query: 736 cctgcatactatgctcacctggcagccttccgagctcggttctacatgga 785
|| || || |||||||| || ||||| || ||||| || |||||| ||||
Sbjct: 2788 ccagcgtattatgctcatcttgcagcatttcgagcacgtttctacctgga 2837
Score = 56.0 bits (28), Expect = 1e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 94 ggggaagattctagtccttccattgcagctgtggttgcttttcaagactggcctgaggtt 153
|||||||| || || ||||| || || ||||| ||||||| ||||||||||||||| ||
Sbjct: 2146 ggggaagagtcaagcccttcaatcgctgctgttgttgcttctcaagactggcctgaagtg 2205
Query: 154 acaaagtatgcaggattggtgagtgctcaagc 185
||||| ||||| || || || ||||||||||
Sbjct: 2206 acaaaatatgcgggtttagtttgtgctcaagc 2237
>ref|NM_123748.2| Arabidopsis thaliana ZLL (ZWILLE) AT5G43810 (ZLL) mRNA, complete cds
Length = 3330
Score = 99.6 bits (50), Expect = 1e-018
Identities = 185/230 (80%)
Strand = Plus / Plus
Query: 556 catccaactgagtttgatttctacctgtgcagccatgctggcattcagggaacaagccgc 615
||||||||||| || || |||||||| || |||||||| || ||||||||||||||| |
Sbjct: 2736 catccaactgaattcgacttctacctttgtagccatgcgggtattcagggaacaagcagg 2795
Query: 616 cctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaact 675
||||| |||||||||||||| ||||| |||||||| || || || ||||| | ||| ||
Sbjct: 2796 cctgcacattaccatgttctttgggacgagaacaatttcacagcagatggtattcaatct 2855
Query: 676 ctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcct 735
|| || ||||| | ||||| || ||||| ||||||| || || || || || ||||||
Sbjct: 2856 ctgactaacaatctctgttatacctatgcgcggtgcactcggtcggtctctatagttcct 2915
Query: 736 cctgcatactatgctcacctggcagccttccgagctcggttctacatgga 785
|| || || |||||||| || ||||| || ||||| || |||||| ||||
Sbjct: 2916 ccagcgtattatgctcatcttgcagcatttcgagcacgtttctacctgga 2965
Score = 56.0 bits (28), Expect = 1e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 94 ggggaagattctagtccttccattgcagctgtggttgcttttcaagactggcctgaggtt 153
|||||||| || || ||||| || || ||||| ||||||| ||||||||||||||| ||
Sbjct: 2274 ggggaagagtcaagcccttcaatcgctgctgttgttgcttctcaagactggcctgaagtg 2333
Query: 154 acaaagtatgcaggattggtgagtgctcaagc 185
||||| ||||| || || || ||||||||||
Sbjct: 2334 acaaaatatgcgggtttagtttgtgctcaagc 2365
>gb|BP575189.1|BP575189 BP575189 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-11-F08 3',
mRNA sequence
Length = 436
Score = 93.7 bits (47), Expect = 6e-017
Identities = 92/107 (85%)
Strand = Plus / Minus
Query: 685 aacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatac 744
||||| |||||||||||||| || |||||||||||||| || |||||||| ||||||||
Sbjct: 434 aacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccctgcatat 375
Query: 745 tatgctcacctggcagccttccgagctcggttctacatggagccaga 791
||||| || || ||||| || | ||||| |||||||||||||||||
Sbjct: 374 tatgcacatctagcagcttttagggctcgattctacatggagccaga 328
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 203 gtgaagcgtgtcatgttctactgct 179
>gb|BP601377.1|BP601377 BP601377 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-49-M05 3',
mRNA sequence
Length = 437
Score = 93.7 bits (47), Expect = 6e-017
Identities = 92/107 (85%)
Strand = Plus / Minus
Query: 685 aacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatac 744
||||| |||||||||||||| || |||||||||||||| || |||||||| ||||||||
Sbjct: 434 aacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccctgcatat 375
Query: 745 tatgctcacctggcagccttccgagctcggttctacatggagccaga 791
||||| || || ||||| || | ||||| |||||||||||||||||
Sbjct: 374 tatgcacatctagcagcttttagggctcgattctacatggagccaga 328
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 203 gtgaagcgtgtcatgttctactgct 179
>gb|BP611041.1|BP611041 BP611041 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-84-F12 3',
mRNA sequence
Length = 435
Score = 93.7 bits (47), Expect = 6e-017
Identities = 92/107 (85%)
Strand = Plus / Minus
Query: 685 aacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatac 744
||||| |||||||||||||| || |||||||||||||| || |||||||| ||||||||
Sbjct: 434 aacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccctgcatat 375
Query: 745 tatgctcacctggcagccttccgagctcggttctacatggagccaga 791
||||| || || ||||| || | ||||| |||||||||||||||||
Sbjct: 374 tatgcacatctagcagcttttagggctcgattctacatggagccaga 328
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 203 gtgaagcgtgtcatgttctactgct 179
>gb|BP617474.1|BP617474 BP617474 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-24-B20 3',
mRNA sequence
Length = 439
Score = 93.7 bits (47), Expect = 6e-017
Identities = 92/107 (85%)
Strand = Plus / Minus
Query: 685 aacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatac 744
||||| |||||||||||||| || |||||||||||||| || |||||||| ||||||||
Sbjct: 435 aacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccctgcatat 376
Query: 745 tatgctcacctggcagccttccgagctcggttctacatggagccaga 791
||||| || || ||||| || | ||||| |||||||||||||||||
Sbjct: 375 tatgcacatctagcagcttttagggctcgattctacatggagccaga 329
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 204 gtgaagcgtgtcatgttctactgct 180
>gb|AV792863.1|AV792863 AV792863 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-17-A08 3',
mRNA sequence
Length = 439
Score = 87.7 bits (44), Expect = 4e-015
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 680 ccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctg 739
|||| ||||| |||||||||||||| || |||||||||||||| || |||||||| ||||
Sbjct: 439 ccaataacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccctg 380
Query: 740 catactatgctcacctggcagccttccgagctcggttctacatggagccaga 791
|||| ||||| || || |||| || | ||||| |||||||||||||||||
Sbjct: 379 catattatgcacatctaccagcttttagggctcgattctacatggagccaga 328
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 203 gtgaagcgtgtcatgttctactgct 179
>gb|CA781259.1|CA781259 014A08AF Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 569
Score = 85.7 bits (43), Expect = 2e-014
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 556 catccaactgagtttgatttctacctgtgcagccatgctggcattcagggaacaagccgc 615
||||||||||| || || |||||||| || |||||||| || ||||||||||||||| |
Sbjct: 467 catccaactgaattcgacttctacctttgtagccatgcgggtattcagggaacaagcagg 526
Query: 616 cctgcccattaccatgttctgtgggatgagaacaa 650
|||| |||||||||||||| ||||| ||||||||
Sbjct: 527 cctggacattaccatgttctttgggacgagaacaa 561
Score = 50.1 bits (25), Expect = 8e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 121 gctgtggttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagtgct 180
||||| ||||||| ||||||||||||||| || ||||| ||||| || || || |||||
Sbjct: 32 gctgttgttgcttctcaagactggcctgaagtgacaaaatatgcgggtttagtttgtgct 91
Query: 181 caagc 185
|||||
Sbjct: 92 caagc 96
>gb|BP657306.1|BP657306 BP657306 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-30-M01 3',
mRNA sequence
Length = 399
Score = 83.8 bits (42), Expect = 6e-014
Identities = 100/118 (84%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 674 ctctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttc 733
|||| ||||| ||||| |||||||| ||||| || |||||||||||||| || |||||||
Sbjct: 393 ctctgaccaataacttatgttacacctatgcaagatgcacacgctcagtttcaattgttc 334
Query: 734 ctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagccaga 791
| |||||||| ||||| || || ||||| || | ||||| |||||||||||||||||
Sbjct: 333 cccctgcatattatgcacatctagcagcttttag-gctcgattctacatggagccaga 277
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 156 gtgaagcgtgtcatgttctactgct 132
>gb|BP785021.1|BP785021 BP785021 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-93-B12 3',
mRNA sequence
Length = 432
Score = 83.8 bits (42), Expect = 6e-014
Identities = 84/98 (85%)
Strand = Plus / Minus
Query: 694 tacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcac 753
||||||||||| || |||||||||||||| || |||||||| |||||||| ||||| ||
Sbjct: 432 tacacgtatgcaagatgcacacgctcagtttcaattgttccccctgcatattatgcacat 373
Query: 754 ctggcagccttccgagctcggttctacatggagccaga 791
|| ||||| || | ||||| |||||||||||||||||
Sbjct: 372 ctagcagcttttagggctcgattctacatggagccaga 335
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 210 gtgaagcgtgtcatgttctactgct 186
>gb|B96649.1|B96649 T30P20TR TAMU Arabidopsis thaliana genomic clone T30P20, DNA
sequence
Length = 436
Score = 81.8 bits (41), Expect = 2e-013
Identities = 56/61 (91%)
Strand = Plus / Minus
Query: 326 acagggatggcgtcagtgagggacaattctaccaagttctgttgtatgaacttgatgcca 385
|||||||||| ||||||||||||||||| ||||||||| || | ||||||||||||||||
Sbjct: 310 acagggatggagtcagtgagggacaattttaccaagttttgctctatgaacttgatgcca 251
Query: 386 t 386
|
Sbjct: 250 t 250
Score = 54.0 bits (27), Expect = 5e-005
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 427 ccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaataatcac 486
||||| || ||||| ||||| ||| ||||||||||||| ||| |||||||| | || |||
Sbjct: 126 ccagtgacatttgtggtggtgcagaagcgtcatcacacgaggctgtttgctcagaaccac 67
Query: 487 aatgat 492
||||||
Sbjct: 66 aatgat 61
>gb|BP606094.1|BP606094 BP606094 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-69-I10 3',
mRNA sequence
Length = 424
Score = 81.8 bits (41), Expect = 2e-013
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 695 acacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacc 754
|||||||||| || |||||||||||||| || |||||||| |||||||| ||||| || |
Sbjct: 424 acacgtatgcaagatgcacacgctcagtttcaattgttccccctgcatattatgcacatc 365
Query: 755 tggcagccttccgagctcggttctacatggagccaga 791
| ||||| || | ||||| |||||||||||||||||
Sbjct: 364 tagcagcttttagggctcgattctacatggagccaga 328
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 203 gtgaagcgtgtcatgttctactgct 179
>gb|AC020889.3|AC020889 Genomic sequence for Arabidopsis thaliana BAC T1N15 from chromosome
I, complete sequence
Length = 95295
Score = 81.8 bits (41), Expect = 2e-013
Identities = 56/61 (91%)
Strand = Plus / Minus
Query: 326 acagggatggcgtcagtgagggacaattctaccaagttctgttgtatgaacttgatgcca 385
|||||||||| ||||||||||||||||| ||||||||| || | ||||||||||||||||
Sbjct: 2255 acagggatggagtcagtgagggacaattttaccaagttttgctctatgaacttgatgcca 2196
Query: 386 t 386
|
Sbjct: 2195 t 2195
Score = 75.8 bits (38), Expect = 1e-011
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 616 cctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaact 675
||||| |||||||| ||||| |||||||||||||||||||| || ||||| | ||| ||
Sbjct: 1708 cctgctcattaccacgttctttgggatgagaacaactttactgcagatggacttcaatct 1649
Query: 676 ctcaccaacaacttgtgttacacgta 701
|| ||||| ||||| |||||||||||
Sbjct: 1648 ctgaccaataacttatgttacacgta 1623
Score = 54.0 bits (27), Expect = 5e-005
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 427 ccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaataatcac 486
||||| || ||||| ||||| ||| ||||||||||||| ||| |||||||| | || |||
Sbjct: 2071 ccagtgacatttgtggtggtgcagaagcgtcatcacacgaggctgtttgctcagaaccac 2012
Query: 487 aatgat 492
||||||
Sbjct: 2011 aatgat 2006
Score = 44.1 bits (22), Expect = 0.052
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 730 gttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagcca 789
||||| |||||||| ||||| || || ||||| || | ||||| |||||||||||||||
Sbjct: 1389 gttccccctgcatattatgcacatctagcagcttttagggctcgattctacatggagcca 1330
Query: 790 ga 791
||
Sbjct: 1329 ga 1328
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 1203 gtgaagcgtgtcatgttctactgct 1179
>gb|AC007932.3|F11A17 Arabidopsis thaliana chromosome 1 BAC F11A17 sequence, complete
sequence
Length = 102078
Score = 81.8 bits (41), Expect = 2e-013
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 326 acagggatggcgtcagtgagggacaattctaccaagttctgttgtatgaacttgatgcca 385
|||||||||| ||||||||||||||||| ||||||||| || | ||||||||||||||||
Sbjct: 16701 acagggatggagtcagtgagggacaattttaccaagttttgctctatgaacttgatgcca 16760
Query: 386 t 386
|
Sbjct: 16761 t 16761
Score = 75.8 bits (38), Expect = 1e-011
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 616 cctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaact 675
||||| |||||||| ||||| |||||||||||||||||||| || ||||| | ||| ||
Sbjct: 17248 cctgctcattaccacgttctttgggatgagaacaactttactgcagatggacttcaatct 17307
Query: 676 ctcaccaacaacttgtgttacacgta 701
|| ||||| ||||| |||||||||||
Sbjct: 17308 ctgaccaataacttatgttacacgta 17333
Score = 54.0 bits (27), Expect = 5e-005
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 427 ccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaataatcac 486
||||| || ||||| ||||| ||| ||||||||||||| ||| |||||||| | || |||
Sbjct: 16885 ccagtgacatttgtggtggtgcagaagcgtcatcacacgaggctgtttgctcagaaccac 16944
Query: 487 aatgat 492
||||||
Sbjct: 16945 aatgat 16950
Score = 44.1 bits (22), Expect = 0.052
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 730 gttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagcca 789
||||| |||||||| ||||| || || ||||| || | ||||| |||||||||||||||
Sbjct: 17567 gttccccctgcatattatgcacatctagcagcttttagggctcgattctacatggagcca 17626
Query: 790 ga 791
||
Sbjct: 17627 ga 17628
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 17753 gtgaagcgtgtcatgttctactgct 17777
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 81.8 bits (41), Expect = 2e-013
Identities = 56/61 (91%)
Strand = Plus / Minus
Query: 326 acagggatggcgtcagtgagggacaattctaccaagttctgttgtatgaacttgatgcca 385
|||||||||| ||||||||||||||||| ||||||||| || | ||||||||||||||||
Sbjct: 2246625 acagggatggagtcagtgagggacaattttaccaagttttgctctatgaacttgatgcca 2246566
Query: 386 t 386
|
Sbjct: 2246565 t 2246565
Score = 75.8 bits (38), Expect = 1e-011
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 616 cctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaact 675
||||| |||||||| ||||| |||||||||||||||||||| || ||||| | ||| ||
Sbjct: 2246078 cctgctcattaccacgttctttgggatgagaacaactttactgcagatggacttcaatct 2246019
Query: 676 ctcaccaacaacttgtgttacacgta 701
|| ||||| ||||| |||||||||||
Sbjct: 2246018 ctgaccaataacttatgttacacgta 2245993
Score = 54.0 bits (27), Expect = 5e-005
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 427 ccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaataatcac 486
||||| || ||||| ||||| ||| ||||||||||||| ||| |||||||| | || |||
Sbjct: 2246441 ccagtgacatttgtggtggtgcagaagcgtcatcacacgaggctgtttgctcagaaccac 2246382
Query: 487 aatgat 492
||||||
Sbjct: 2246381 aatgat 2246376
Score = 44.1 bits (22), Expect = 0.052
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 730 gttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagcca 789
||||| |||||||| ||||| || || ||||| || | ||||| |||||||||||||||
Sbjct: 2245759 gttccccctgcatattatgcacatctagcagcttttagggctcgattctacatggagcca 2245700
Query: 790 ga 791
||
Sbjct: 2245699 ga 2245698
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 2245573 gtgaagcgtgtcatgttctactgct 2245549
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 81.8 bits (41), Expect = 2e-013
Identities = 56/61 (91%)
Strand = Plus / Minus
Query: 326 acagggatggcgtcagtgagggacaattctaccaagttctgttgtatgaacttgatgcca 385
|||||||||| ||||||||||||||||| ||||||||| || | ||||||||||||||||
Sbjct: 17891031 acagggatggagtcagtgagggacaattttaccaagttttgctctatgaacttgatgcca 17890972
Query: 386 t 386
|
Sbjct: 17890971 t 17890971
Score = 75.8 bits (38), Expect = 1e-011
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 616 cctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaact 675
||||| |||||||| ||||| |||||||||||||||||||| || ||||| | ||| ||
Sbjct: 17890484 cctgctcattaccacgttctttgggatgagaacaactttactgcagatggacttcaatct 17890425
Query: 676 ctcaccaacaacttgtgttacacgta 701
|| ||||| ||||| |||||||||||
Sbjct: 17890424 ctgaccaataacttatgttacacgta 17890399
Score = 54.0 bits (27), Expect = 5e-005
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 427 ccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaataatcac 486
||||| || ||||| ||||| ||| ||||||||||||| ||| |||||||| | || |||
Sbjct: 17890847 ccagtgacatttgtggtggtgcagaagcgtcatcacacgaggctgtttgctcagaaccac 17890788
Query: 487 aatgat 492
||||||
Sbjct: 17890787 aatgat 17890782
Score = 44.1 bits (22), Expect = 0.052
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 730 gttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagcca 789
||||| |||||||| ||||| || || ||||| || | ||||| |||||||||||||||
Sbjct: 17890165 gttccccctgcatattatgcacatctagcagcttttagggctcgattctacatggagcca 17890106
Query: 790 ga 791
||
Sbjct: 17890105 ga 17890104
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 17889979 gtgaagcgtgtcatgttctactgct 17889955
>emb|BX530819.1| Arabidopsis thaliana T-DNA flanking sequence GK-195F03-020162,
genomic survey sequence
Length = 465
Score = 75.8 bits (38), Expect = 1e-011
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 616 cctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaact 675
||||| |||||||| ||||| |||||||||||||||||||| || ||||| | ||| ||
Sbjct: 117 cctgctcattaccacgttctttgggatgagaacaactttactgcagatggacttcaatct 176
Query: 676 ctcaccaacaacttgtgttacacgta 701
|| ||||| ||||| |||||||||||
Sbjct: 177 ctgaccaataacttatgttacacgta 202
>emb|BX530820.1| Arabidopsis thaliana T-DNA flanking sequence GK-195F03-020163,
genomic survey sequence
Length = 493
Score = 75.8 bits (38), Expect = 1e-011
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 616 cctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaact 675
||||| |||||||| ||||| |||||||||||||||||||| || ||||| | ||| ||
Sbjct: 139 cctgctcattaccacgttctttgggatgagaacaactttactgcagatggacttcaatct 198
Query: 676 ctcaccaacaacttgtgttacacgta 701
|| ||||| ||||| |||||||||||
Sbjct: 199 ctgaccaataacttatgttacacgta 224
>gb|BP658160.1|BP658160 BP658160 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-34-D11 3',
mRNA sequence
Length = 389
Score = 75.8 bits (38), Expect = 1e-011
Identities = 90/106 (84%), Gaps = 1/106 (0%)
Strand = Plus / Minus
Query: 686 acttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatact 745
|||| |||||||||||||| || |||||||||||||| || |||||||| |||||||| |
Sbjct: 380 acttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccctgcatatt 321
Query: 746 atgctcacctggcagccttccgagctcggttctacatggagccaga 791
|||| || || |||| || | ||||| |||||||||||||||||
Sbjct: 320 atgcacatctaccagcttttag-gctcgattctacatggagccaga 276
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 156 gtgaagcgtgtcatgttctactgct 132
>gb|AV813765.1|AV813765 AV813765 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-79-O07 3',
mRNA sequence
Length = 399
Score = 69.9 bits (35), Expect = 9e-010
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 709 tgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagccttccga 768
|||||||||||||| || |||||||| |||||||| ||||| || || ||||| || |
Sbjct: 393 tgcacacgctcagtttcaattgttccccctgcatattatgcacatctagcagcttttagg 334
Query: 769 gctcggttctacatggagccaga 791
||||| |||||||||||||||||
Sbjct: 333 gctcgattctacatggagccaga 311
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 187 gtgaagcgtgtcatgttctactgct 163
>gb|BP782038.1|BP782038 BP782038 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-80-K18 3',
mRNA sequence
Length = 412
Score = 69.9 bits (35), Expect = 9e-010
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 709 tgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagccttccga 768
|||||||||||||| || |||||||| |||||||| ||||| || || ||||| || |
Sbjct: 411 tgcacacgctcagtttcaattgttccccctgcatattatgcacatctagcagcttttagg 352
Query: 769 gctcggttctacatggagccaga 791
||||| |||||||||||||||||
Sbjct: 351 gctcgattctacatggagccaga 329
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 907 gtgaagcgggtcatgttctactgct 931
|||||||| ||||||||||||||||
Sbjct: 204 gtgaagcgtgtcatgttctactgct 180
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 411,032
Number of Sequences: 1013581
Number of extensions: 411032
Number of successful extensions: 29056
Number of sequences better than 0.5: 81
Number of HSP's better than 0.5 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28134
Number of HSP's gapped (non-prelim): 900
length of query: 1118
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1098
effective length of database: 888,669,252
effective search space: 975758838696
effective search space used: 975758838696
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)