BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738959.2.3
(725 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY087118.1| Arabidopsis thaliana clone 31901 mRNA, compl... 62 1e-007
gb|AA394355.1|AA394355 25938 Lambda-PRL2 Arabidopsis thalia... 56 9e-006
gb|H76319.1|H76319 18024 Lambda-PRL2 Arabidopsis thaliana c... 56 9e-006
gb|AY099703.1| Arabidopsis thaliana putative nucleotide-sug... 56 9e-006
gb|AY128899.1| Arabidopsis thaliana putative nucleotide-sug... 56 9e-006
emb|AX506427.1| Sequence 1122 from Patent WO0216655 56 9e-006
gb|AC005727.3| Arabidopsis thaliana chromosome 2 clone F8N1... 56 9e-006
ref|NM_128436.3| Arabidopsis thaliana NAD binding / catalyt... 56 9e-006
ref|NM_201826.1| Arabidopsis thaliana NAD binding / catalyt... 56 9e-006
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 56 9e-006
emb|BX649813.1| Arabidopsis thaliana T-DNA flanking sequenc... 54 3e-005
gb|AU228016.1|AU228016 AU228016 RAFL15 Arabidopsis thaliana... 54 3e-005
gb|CK121683.1|CK121683 202b24.p1 AtM1 Arabidopsis thaliana ... 54 3e-005
gb|AY072098.1| Arabidopsis thaliana putative dTDP-glucose 4... 54 3e-005
gb|AY096586.1| Arabidopsis thaliana putative dTDP-glucose 4... 54 3e-005
emb|BX824968.1|CNS0A6QT Arabidopsis thaliana Full-length cD... 54 3e-005
emb|BX823718.1|CNS0A7QP Arabidopsis thaliana Full-length cD... 54 3e-005
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 54 3e-005
emb|AL133298.1|ATF18L15 Arabidopsis thaliana DNA chromosome... 54 3e-005
ref|NM_114511.2| Arabidopsis thaliana UXS5; catalytic AT3G4... 54 3e-005
ref|NM_001035743.1| Arabidopsis thaliana UXS5; catalytic AT... 54 3e-005
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 54 3e-005
gb|AV782870.1|AV782870 AV782870 RAFL5 Arabidopsis thaliana ... 50 5e-004
gb|AF375442.1| Arabidopsis thaliana AT5g59290/mnc17_180 mRN... 50 5e-004
gb|AY093958.1| Arabidopsis thaliana AT5g59290/mnc17_180 mRN... 50 5e-004
gb|AF387789.1| Arabidopsis thaliana UDP-glucuronic acid dec... 50 5e-004
gb|AY088443.1| Arabidopsis thaliana clone 6701 mRNA, comple... 50 5e-004
emb|BX832416.1|CNS0A12Y Arabidopsis thaliana Full-length cD... 50 5e-004
dbj|AB016890.1| Arabidopsis thaliana genomic DNA, chromosom... 50 5e-004
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 50 5e-004
ref|NM_125319.2| Arabidopsis thaliana UXS3 (UDP-GLUCURONIC ... 50 5e-004
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 50 5e-004
gb|AI998241.1|AI998241 701544888 A. thaliana, Columbia Col-... 48 0.002
emb|BX818916.1|CNS0A9UJ Arabidopsis thaliana Full-length cD... 48 0.002
gb|BX839560.1|BX839560 BX839560 Arabidopsis thaliana Adult ... 44 0.033
gb|AV540354.1|AV540354 AV540354 Arabidopsis thaliana roots ... 42 0.13
gb|AV540797.1|AV540797 AV540797 Arabidopsis thaliana roots ... 42 0.13
gb|AV542304.1|AV542304 AV542304 Arabidopsis thaliana roots ... 42 0.13
gb|BP658198.1|BP658198 BP658198 RAFL19 Arabidopsis thaliana... 42 0.13
>gb|AY087118.1| Arabidopsis thaliana clone 31901 mRNA, complete sequence
Length = 1281
Score = 61.9 bits (31), Expect = 1e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 304 cagaggaagccggacatcacaaaggcgaaggaagttctgggatggga 350
||||||||||| |||||||||||||| || |||||| ||||||||||
Sbjct: 962 cagaggaagccagacatcacaaaggctaaagaagttttgggatggga 1008
Score = 56.0 bits (28), Expect = 9e-006
Identities = 111/136 (81%), Gaps = 2/136 (1%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcatctgctcaggctgtgcgcggtga 79
||||||||||||||||| ||||||| ||||||||||| |||||| || | || |||||
Sbjct: 680 atgaacattgatgatggacgtgttgtaagcaacttcat-tgctcaagcactccgtggtga 738
Query: 80 gcccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccgata 139
| | ||||||| |||| ||||| ||||||||| | || |||||| ||||| | || |
Sbjct: 739 ggcattgactgttcagaaaccagggacacagactcgcag-tttctgttatgtatctgaca 797
Query: 140 tggttgatggtcttat 155
|||||||||| |||||
Sbjct: 798 tggttgatggacttat 813
>gb|AA394355.1|AA394355 25938 Lambda-PRL2 Arabidopsis thaliana cDNA clone 305F11T7, mRNA
sequence
Length = 577
Score = 56.0 bits (28), Expect = 9e-006
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||| ||||| ||| | ||||||||||||||||| || |||| ||||||||||| ||
Sbjct: 79 caacacatatggtcctcgtatgaacattgatgatggtcgcgttgtgagcaacttcat-tg 137
Query: 61 ctcaggct 68
||||||||
Sbjct: 138 ctcaggct 145
>gb|H76319.1|H76319 18024 Lambda-PRL2 Arabidopsis thaliana cDNA clone 200H4T7, mRNA
sequence
Length = 480
Score = 56.0 bits (28), Expect = 9e-006
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||| ||||| ||| | ||||||||||||||||| || |||| ||||||||||| ||
Sbjct: 78 caacacatatggtcctcgtatgaacattgatgatggtcgcgttgtgagcaacttcat-tg 136
Query: 61 ctcaggct 68
||||||||
Sbjct: 137 ctcaggct 144
>gb|AY099703.1| Arabidopsis thaliana putative nucleotide-sugar dehydratase
(At2g28760) mRNA, complete cds
Length = 1393
Score = 56.0 bits (28), Expect = 9e-006
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||| ||||| ||| | ||||||||||||||||| || |||| ||||||||||| ||
Sbjct: 690 caacacatatggtcctcgtatgaacattgatgatggtcgcgttgtgagcaacttcat-tg 748
Query: 61 ctcaggct 68
||||||||
Sbjct: 749 ctcaggct 756
>gb|AY128899.1| Arabidopsis thaliana putative nucleotide-sugar dehydratase
(At2g28760) mRNA, complete cds
Length = 1234
Score = 56.0 bits (28), Expect = 9e-006
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||| ||||| ||| | ||||||||||||||||| || |||| ||||||||||| ||
Sbjct: 606 caacacatatggtcctcgtatgaacattgatgatggtcgcgttgtgagcaacttcat-tg 664
Query: 61 ctcaggct 68
||||||||
Sbjct: 665 ctcaggct 672
>emb|AX506427.1| Sequence 1122 from Patent WO0216655
Length = 1032
Score = 56.0 bits (28), Expect = 9e-006
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||| ||||| ||| | ||||||||||||||||| || |||| ||||||||||| ||
Sbjct: 606 caacacatatggtcctcgtatgaacattgatgatggtcgcgttgtgagcaacttcat-tg 664
Query: 61 ctcaggct 68
||||||||
Sbjct: 665 ctcaggct 672
>gb|AC005727.3| Arabidopsis thaliana chromosome 2 clone F8N16 map mi54, complete
sequence
Length = 107097
Score = 56.0 bits (28), Expect = 9e-006
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||| ||||| ||| | ||||||||||||||||| || |||| ||||||||||| ||
Sbjct: 8549 caacacatatggtcctcgtatgaacattgatgatggtcgcgttgtgagcaacttcat-tg 8491
Query: 61 ctcaggct 68
||||||||
Sbjct: 8490 ctcaggct 8483
>ref|NM_128436.3| Arabidopsis thaliana NAD binding / catalytic AT2G28760 transcript
variant AT2G28760.1 mRNA, complete cds
Length = 1394
Score = 56.0 bits (28), Expect = 9e-006
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||| ||||| ||| | ||||||||||||||||| || |||| ||||||||||| ||
Sbjct: 690 caacacatatggtcctcgtatgaacattgatgatggtcgcgttgtgagcaacttcat-tg 748
Query: 61 ctcaggct 68
||||||||
Sbjct: 749 ctcaggct 756
>ref|NM_201826.1| Arabidopsis thaliana NAD binding / catalytic AT2G28760 transcript
variant AT2G28760.2 mRNA, complete cds
Length = 1389
Score = 56.0 bits (28), Expect = 9e-006
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||| ||||| ||| | ||||||||||||||||| || |||| ||||||||||| ||
Sbjct: 685 caacacatatggtcctcgtatgaacattgatgatggtcgcgttgtgagcaacttcat-tg 743
Query: 61 ctcaggct 68
||||||||
Sbjct: 744 ctcaggct 751
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 56.0 bits (28), Expect = 9e-006
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||| ||||| ||| | ||||||||||||||||| || |||| ||||||||||| ||
Sbjct: 12344442 caacacatatggtcctcgtatgaacattgatgatggtcgcgttgtgagcaacttcat-tg 12344384
Query: 61 ctcaggct 68
||||||||
Sbjct: 12344383 ctcaggct 12344376
>emb|BX649813.1| Arabidopsis thaliana T-DNA flanking sequence GK-268B10-015068,
genomic survey sequence
Length = 357
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 304 cagaggaagccggacatcacaaaggcgaaggaagttctgggatggga 350
||||||||||| |||||||||||||| || ||||| ||||||||||
Sbjct: 94 cagaggaagccagacatcacaaaggctaaagaagtgttgggatggga 140
>gb|AU228016.1|AU228016 AU228016 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-41-G24 3',
mRNA sequence
Length = 416
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 304 cagaggaagccggacatcacaaaggcgaaggaagttctgggatggga 350
||||||||||| |||||||||||||| || ||||| ||||||||||
Sbjct: 349 cagaggaagccagacatcacaaaggctaaagaagtgttgggatggga 303
>gb|CK121683.1|CK121683 202b24.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011B24202
5-PRIME, mRNA sequence
Length = 762
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 304 cagaggaagccggacatcacaaaggcgaaggaagttctgggatggga 350
||||||||||| |||||||||||||| || ||||| ||||||||||
Sbjct: 583 cagaggaagccagacatcacaaaggctaaagaagtgttgggatggga 629
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
|||||||| |||||||||||||||| |||||||||||
Sbjct: 301 atgaacatcgatgatggccgtgttgtaagcaacttcat 338
>gb|AY072098.1| Arabidopsis thaliana putative dTDP-glucose 4-6-dehydratase
(At3g46440) mRNA, complete cds
Length = 1356
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 304 cagaggaagccggacatcacaaaggcgaaggaagttctgggatggga 350
||||||||||| |||||||||||||| || ||||| ||||||||||
Sbjct: 1026 cagaggaagccagacatcacaaaggctaaagaagtgttgggatggga 1072
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
|||||||| |||||||||||||||| |||||||||||
Sbjct: 744 atgaacatcgatgatggccgtgttgtaagcaacttcat 781
>gb|AY096586.1| Arabidopsis thaliana putative dTDP-glucose 4-6-dehydratases
(At3g46440) mRNA, complete cds
Length = 1057
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 304 cagaggaagccggacatcacaaaggcgaaggaagttctgggatggga 350
||||||||||| |||||||||||||| || ||||| ||||||||||
Sbjct: 901 cagaggaagccagacatcacaaaggctaaagaagtgttgggatggga 947
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
|||||||| |||||||||||||||| |||||||||||
Sbjct: 619 atgaacatcgatgatggccgtgttgtaagcaacttcat 656
>emb|BX824968.1|CNS0A6QT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH86ZD03 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1211
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 304 cagaggaagccggacatcacaaaggcgaaggaagttctgggatggga 350
||||||||||| |||||||||||||| || ||||| ||||||||||
Sbjct: 925 cagaggaagccagacatcacaaaggctaaagaagtgttgggatggga 971
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
|||||||| |||||||||||||||| |||||||||||
Sbjct: 643 atgaacatcgatgatggccgtgttgtaagcaacttcat 680
>emb|BX823718.1|CNS0A7QP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS6ZC01 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1114
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 304 cagaggaagccggacatcacaaaggcgaaggaagttctgggatggga 350
||||||||||| |||||||||||||| || ||||| ||||||||||
Sbjct: 851 cagaggaagccagacatcacaaaggctaaagaagtgttgggatggga 897
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 304 cagaggaagccggacatcacaaaggcgaaggaagttctgggatggga 350
||||||||||| |||||||||||||| || ||||| ||||||||||
Sbjct: 17053440 cagaggaagccagacatcacaaaggctaaagaagtgttgggatggga 17053394
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
|||||||| |||||||||||||||| |||||||||||
Sbjct: 17053987 atgaacatcgatgatggccgtgttgtaagcaacttcat 17053950
>emb|AL133298.1|ATF18L15 Arabidopsis thaliana DNA chromosome 3, BAC clone F18L15
Length = 100328
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 304 cagaggaagccggacatcacaaaggcgaaggaagttctgggatggga 350
||||||||||| |||||||||||||| || ||||| ||||||||||
Sbjct: 75579 cagaggaagccagacatcacaaaggctaaagaagtgttgggatggga 75533
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
|||||||| |||||||||||||||| |||||||||||
Sbjct: 76126 atgaacatcgatgatggccgtgttgtaagcaacttcat 76089
>ref|NM_114511.2| Arabidopsis thaliana UXS5; catalytic AT3G46440 (UXS5) transcript
variant AT3G46440.1 mRNA, complete cds
Length = 1374
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 304 cagaggaagccggacatcacaaaggcgaaggaagttctgggatggga 350
||||||||||| |||||||||||||| || ||||| ||||||||||
Sbjct: 1026 cagaggaagccagacatcacaaaggctaaagaagtgttgggatggga 1072
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
|||||||| |||||||||||||||| |||||||||||
Sbjct: 744 atgaacatcgatgatggccgtgttgtaagcaacttcat 781
>ref|NM_001035743.1| Arabidopsis thaliana UXS5; catalytic AT3G46440 (UXS5) transcript
variant AT3G46440.2 mRNA, complete cds
Length = 1464
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 304 cagaggaagccggacatcacaaaggcgaaggaagttctgggatggga 350
||||||||||| |||||||||||||| || ||||| ||||||||||
Sbjct: 1116 cagaggaagccagacatcacaaaggctaaagaagtgttgggatggga 1162
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
|||||||| |||||||||||||||| |||||||||||
Sbjct: 834 atgaacatcgatgatggccgtgttgtaagcaacttcat 871
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 304 cagaggaagccggacatcacaaaggcgaaggaagttctgggatggga 350
||||||||||| |||||||||||||| || ||||| ||||||||||
Sbjct: 17100378 cagaggaagccagacatcacaaaggctaaagaagtgttgggatggga 17100332
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
|||||||| |||||||||||||||| |||||||||||
Sbjct: 17100925 atgaacatcgatgatggccgtgttgtaagcaacttcat 17100888
>gb|AV782870.1|AV782870 AV782870 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-02-L20 3',
mRNA sequence
Length = 689
Score = 50.1 bits (25), Expect = 5e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcat 57
|||||| ||||| ||| | |||||||| |||||||| ||||||| |||||||||||
Sbjct: 670 caacacatatggtcctcgaatgaacatcgatgatgggcgtgttgtgagcaacttcat 614
Score = 42.1 bits (21), Expect = 0.13
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 199 aacccaggtgaattcaccatgctggaacttgctgaga 235
||||||||||| ||||| ||| ||||||| |||||||
Sbjct: 474 aacccaggtgagttcacaatggtggaactggctgaga 438
>gb|AF375442.1| Arabidopsis thaliana AT5g59290/mnc17_180 mRNA, complete cds
Length = 1364
Score = 50.1 bits (25), Expect = 5e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcat 57
|||||| ||||| ||| | |||||||| |||||||| ||||||| |||||||||||
Sbjct: 693 caacacatatggtcctcgaatgaacatcgatgatgggcgtgttgtgagcaacttcat 749
Score = 42.1 bits (21), Expect = 0.13
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 199 aacccaggtgaattcaccatgctggaacttgctgaga 235
||||||||||| ||||| ||| ||||||| |||||||
Sbjct: 889 aacccaggtgagttcacaatggtggaactggctgaga 925
>gb|AY093958.1| Arabidopsis thaliana AT5g59290/mnc17_180 mRNA, complete cds
Length = 1029
Score = 50.1 bits (25), Expect = 5e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcat 57
|||||| ||||| ||| | |||||||| |||||||| ||||||| |||||||||||
Sbjct: 603 caacacatatggtcctcgaatgaacatcgatgatgggcgtgttgtgagcaacttcat 659
Score = 42.1 bits (21), Expect = 0.13
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 199 aacccaggtgaattcaccatgctggaacttgctgaga 235
||||||||||| ||||| ||| ||||||| |||||||
Sbjct: 799 aacccaggtgagttcacaatggtggaactggctgaga 835
>gb|AF387789.1| Arabidopsis thaliana UDP-glucuronic acid decarboxylase (UXS3) mRNA,
complete cds
Length = 1029
Score = 50.1 bits (25), Expect = 5e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcat 57
|||||| ||||| ||| | |||||||| |||||||| ||||||| |||||||||||
Sbjct: 603 caacacatatggtcctcgaatgaacatcgatgatgggcgtgttgtgagcaacttcat 659
Score = 42.1 bits (21), Expect = 0.13
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 199 aacccaggtgaattcaccatgctggaacttgctgaga 235
||||||||||| ||||| ||| ||||||| |||||||
Sbjct: 799 aacccaggtgagttcacaatggtggaactggctgaga 835
>gb|AY088443.1| Arabidopsis thaliana clone 6701 mRNA, complete sequence
Length = 1418
Score = 50.1 bits (25), Expect = 5e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcat 57
|||||| ||||| ||| | |||||||| |||||||| ||||||| |||||||||||
Sbjct: 749 caacacatatggtcctcgaatgaacatcgatgatgggcgtgttgtgagcaacttcat 805
Score = 42.1 bits (21), Expect = 0.13
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 199 aacccaggtgaattcaccatgctggaacttgctgaga 235
||||||||||| ||||| ||| ||||||| |||||||
Sbjct: 945 aacccaggtgagttcacaatggtggaactggctgaga 981
>emb|BX832416.1|CNS0A12Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH71ZD04 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1303
Score = 50.1 bits (25), Expect = 5e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcat 57
|||||| ||||| ||| | |||||||| |||||||| ||||||| |||||||||||
Sbjct: 675 caacacatatggtcctcgaatgaacatcgatgatgggcgtgttgtgagcaacttcat 731
Score = 42.1 bits (21), Expect = 0.13
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 199 aacccaggtgaattcaccatgctggaacttgctgaga 235
||||||||||| ||||| ||| ||||||| |||||||
Sbjct: 871 aacccaggtgagttcacaatggtggaactggctgaga 907
>dbj|AB016890.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNC17
Length = 75803
Score = 50.1 bits (25), Expect = 5e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcat 57
|||||| ||||| ||| | |||||||| |||||||| ||||||| |||||||||||
Sbjct: 55787 caacacatatggtcctcgaatgaacatcgatgatgggcgtgttgtgagcaacttcat 55731
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 50.1 bits (25), Expect = 5e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcat 57
|||||| ||||| ||| | |||||||| |||||||| ||||||| |||||||||||
Sbjct: 21271828 caacacatatggtcctcgaatgaacatcgatgatgggcgtgttgtgagcaacttcat 21271772
>ref|NM_125319.2| Arabidopsis thaliana UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE);
catalytic AT5G59290 (UXS3) mRNA, complete cds
Length = 1459
Score = 50.1 bits (25), Expect = 5e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcat 57
|||||| ||||| ||| | |||||||| |||||||| ||||||| |||||||||||
Sbjct: 749 caacacatatggtcctcgaatgaacatcgatgatgggcgtgttgtgagcaacttcat 805
Score = 42.1 bits (21), Expect = 0.13
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 199 aacccaggtgaattcaccatgctggaacttgctgaga 235
||||||||||| ||||| ||| ||||||| |||||||
Sbjct: 945 aacccaggtgagttcacaatggtggaactggctgaga 981
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 50.1 bits (25), Expect = 5e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcat 57
|||||| ||||| ||| | |||||||| |||||||| ||||||| |||||||||||
Sbjct: 23933741 caacacatatggtcctcgaatgaacatcgatgatgggcgtgttgtgagcaacttcat 23933685
>gb|AI998241.1|AI998241 701544888 A. thaliana, Columbia Col-0, rosette-2 Arabidopsis
thaliana cDNA clone 701544888, mRNA sequence
Length = 605
Score = 48.1 bits (24), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 304 cagaggaagccggacatcacaaaggcgaaggaagttctgggatggga 350
|||||||| || |||||||||||||| || ||||| ||||||||||
Sbjct: 336 cagaggaanccagacatcacaaaggctaaagaagtgttgggatggga 290
>emb|BX818916.1|CNS0A9UJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB26ZG06 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1314
Score = 48.1 bits (24), Expect = 0.002
Identities = 58/68 (85%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||| ||||| ||| | ||||||||||||||||| || |||| ||| ||||||| ||
Sbjct: 669 caacacatatggtcctcgtatgaacattgatgatggtcgcgttgtgagccacttcat-tg 727
Query: 61 ctcaggct 68
||||||||
Sbjct: 728 ctcaggct 735
>gb|BX839560.1|BX839560 BX839560 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS49ZB08 5PRIM, mRNA
sequence
Length = 896
Score = 44.1 bits (22), Expect = 0.033
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcat 57
|||| ||| |||||||||||||||| |||||||||||
Sbjct: 733 atgagcatcgatgatggccgtgttgtgagcaacttcat 770
>gb|AV540354.1|AV540354 AV540354 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ149e01F 3', mRNA sequence
Length = 584
Score = 42.1 bits (21), Expect = 0.13
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 199 aacccaggtgaattcaccatgctggaacttgctgaga 235
||||||||||| ||||| ||| ||||||| |||||||
Sbjct: 515 aacccaggtgagttcacaatggtggaactggctgaga 479
>gb|AV540797.1|AV540797 AV540797 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ155c11F 3', mRNA sequence
Length = 570
Score = 42.1 bits (21), Expect = 0.13
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 199 aacccaggtgaattcaccatgctggaacttgctgaga 235
||||||||||| ||||| ||| ||||||| |||||||
Sbjct: 242 aacccaggtgagttcacaatggtggaactggctgaga 206
>gb|AV542304.1|AV542304 AV542304 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ181g10F 3', mRNA sequence
Length = 550
Score = 42.1 bits (21), Expect = 0.13
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 199 aacccaggtgaattcaccatgctggaacttgctgaga 235
||||||||||| ||||| ||| ||||||| |||||||
Sbjct: 469 aacccaggtgagttcacaatggtggaactggctgaga 433
>gb|BP658198.1|BP658198 BP658198 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-34-H05 3',
mRNA sequence
Length = 397
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 304 cagaggaagccggacatcacaaaggcgaaggaagttctgggatgg 348
|||||||| || |||||||||||||| || ||||| ||||||||
Sbjct: 320 cagaggaacccagacatcacaaaggctaaagaagtgttgggatgg 276
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 288,865
Number of Sequences: 1013581
Number of extensions: 288865
Number of successful extensions: 20392
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19771
Number of HSP's gapped (non-prelim): 620
length of query: 725
length of database: 908,940,872
effective HSP length: 20
effective length of query: 705
effective length of database: 888,669,252
effective search space: 626511822660
effective search space used: 626511822660
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)