BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131612.2.1
(620 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|BX572386.1| Arabidopsis thaliana T-DNA flanking sequenc... 58 2e-006
gb|AV535768.1|AV535768 AV535768 Arabidopsis thaliana flower... 58 2e-006
gb|AC006223.4| Arabidopsis thaliana chromosome 2 clone F22D... 58 2e-006
dbj|AK117353.1| Arabidopsis thaliana At2g31960 mRNA for put... 58 2e-006
ref|NM_179847.1| Arabidopsis thaliana ATGSL03 (GLUCAN SYNTH... 58 2e-006
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 58 2e-006
gb|BX836766.1|BX836766 BX836766 Arabidopsis thaliana Flower... 56 7e-006
emb|AL759226.1| Arabidopsis thaliana T-DNA flanking sequenc... 54 3e-005
gb|AI996136.1|AI996136 701550178 A. thaliana, Columbia Col-... 54 3e-005
gb|AV546456.1|AV546456 AV546456 Arabidopsis thaliana roots ... 54 3e-005
gb|AV546514.1|AV546514 AV546514 Arabidopsis thaliana roots ... 54 3e-005
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 54 3e-005
gb|AF237733.1|AF237733 Arabidopsis thaliana callose synthas... 54 3e-005
emb|AX412747.1| Sequence 511 from Patent WO0222675 54 3e-005
emb|AX441264.1| Sequence 18 from Patent EP1209228 54 3e-005
emb|AX508002.1| Sequence 2697 from Patent WO0216655 54 3e-005
dbj|BD181338.1| A stress-responsive promoter 54 3e-005
gb|AC007153.2| Arabidopsis thaliana chromosome I BAC F3F20 ... 54 3e-005
gb|AC005106.2|AC005106 Genomic sequence for Arabidopsis tha... 54 3e-005
dbj|AB025605.1| Arabidopsis thaliana genomic DNA, chromosom... 54 3e-005
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 54 3e-005
ref|NM_123045.2| Arabidopsis thaliana ATGSL09 (GLUCAN SYNTH... 54 3e-005
ref|NM_100436.2| Arabidopsis thaliana CALS1 (CALLOSE SYNTHA... 54 3e-005
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 54 3e-005
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 54 3e-005
emb|BX819158.1|CNS0A8YL Arabidopsis thaliana Full-length cD... 52 1e-004
gb|AU228526.1|AU228526 AU228526 RAFL16 Arabidopsis thaliana... 50 5e-004
gb|BP639761.1|BP639761 BP639761 RAFL19 Arabidopsis thaliana... 46 0.007
gb|AQ250012.1|AQ250012 T8O20-T7.1 TAMU Arabidopsis thaliana... 44 0.028
gb|AA712259.1|AA712259 31987 Lambda-PRL2 Arabidopsis thalia... 44 0.028
gb|R65557.1|R65557 14061 Lambda-PRL2 Arabidopsis thaliana c... 44 0.028
gb|T75686.1|T75686 10464 Lambda-PRL2 Arabidopsis thaliana c... 44 0.028
gb|AV814153.1|AV814153 AV814153 RAFL9 Arabidopsis thaliana ... 44 0.028
gb|AV534683.1|AV534683 AV534683 Arabidopsis thaliana flower... 44 0.028
gb|AV546664.1|AV546664 AV546664 Arabidopsis thaliana roots ... 44 0.028
gb|AV548888.1|AV548888 AV548888 Arabidopsis thaliana roots ... 44 0.028
gb|BP602184.1|BP602184 BP602184 RAFL16 Arabidopsis thaliana... 44 0.028
gb|BP603316.1|BP603316 BP603316 RAFL16 Arabidopsis thaliana... 44 0.028
gb|BP647849.1|BP647849 BP647849 RAFL19 Arabidopsis thaliana... 44 0.028
emb|Z50752.1|ATSUGTRPR A.thaliana mRNA for sugar transporter 44 0.028
emb|AX412656.1| Sequence 420 from Patent WO0222675 44 0.028
emb|AX507559.1| Sequence 2254 from Patent WO0216655 44 0.028
gb|AC007369.2| Arabidopsis thaliana chromosome I BAC F9H16 ... 44 0.028
gb|AC069251.5|AC069251 Genomic sequence for Arabidopsis tha... 44 0.028
ref|NM_101937.3| Arabidopsis thaliana carbohydrate transpor... 44 0.028
ref|NM_121303.3| Arabidopsis thaliana ATGSL12 (GLUCAN SYNTH... 44 0.028
gb|AQ957761.1|AQ957761 LERAR55TF LERA Arabidopsis thaliana ... 40 0.44
gb|AU229339.1|AU229339 AU229339 RAFL16 Arabidopsis thaliana... 40 0.44
gb|AF080118.1|F8M12 Arabidopsis thaliana BAC F8M12 40 0.44
gb|AC006436.5| Arabidopsis thaliana chromosome 2 clone F13J... 40 0.44
gb|AC007063.6| Arabidopsis thaliana chromosome 2 clone T10F... 40 0.44
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 40 0.44
emb|AL049525.1|ATF25I24 Arabidopsis thaliana DNA chromosome... 40 0.44
emb|AL161518.2|ATCHRIV30 Arabidopsis thaliana DNA chromosom... 40 0.44
tpg|BK001470.1| TPA: Arabidopsis thaliana callose synthase ... 40 0.44
gb|AY337762.1| Arabidopsis thaliana LAP1 (At2g13680) mRNA, ... 40 0.44
ref|NM_179622.2| Arabidopsis thaliana 1,3-beta-glucan synth... 40 0.44
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 40 0.44
>emb|BX572386.1| Arabidopsis thaliana T-DNA flanking sequence GK-549C06-020727,
genomic survey sequence
Length = 430
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 168 ttccttgcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggcc 227
||||| || ||||||||||||||||| ||||| ||||| || ||||| || ||||| ||
Sbjct: 422 ttcctggcttggttcccgttcgtgtctgagtttcagacaagaatgctctttaaccaagca 363
Query: 228 ttcagcagaggtctgcagatctcccgtat 256
|| |||||||| ||||||| || |||||
Sbjct: 362 tttagcagaggattgcagatttcacgtat 334
>gb|AV535768.1|AV535768 AV535768 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB101h07F 3', mRNA sequence
Length = 533
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 168 ttccttgcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggcc 227
||||| || ||||||||||||||||| ||||| ||||| || ||||| || ||||| ||
Sbjct: 255 ttcctggcttggttcccgttcgtgtctgagtttcagacaagaatgctctttaaccaagca 196
Query: 228 ttcagcagaggtctgcagatctcccgtat 256
|| |||||||| ||||||| || |||||
Sbjct: 195 tttagcagaggattgcagatttcacgtat 167
>gb|AC006223.4| Arabidopsis thaliana chromosome 2 clone F22D22 map TEn5, complete
sequence
Length = 103194
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 168 ttccttgcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggcc 227
||||| || ||||||||||||||||| ||||| ||||| || ||||| || ||||| ||
Sbjct: 89478 ttcctggcttggttcccgttcgtgtctgagtttcagacaagaatgctctttaaccaagca 89419
Query: 228 ttcagcagaggtctgcagatctcccgtat 256
|| |||||||| ||||||| || |||||
Sbjct: 89418 tttagcagaggattgcagatttcacgtat 89390
>dbj|AK117353.1| Arabidopsis thaliana At2g31960 mRNA for putative glucan synthase,
complete cds, clone: RAFL16-92-B13
Length = 2390
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 168 ttccttgcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggcc 227
||||| || ||||||||||||||||| ||||| ||||| || ||||| || ||||| ||
Sbjct: 2136 ttcctggcttggttcccgttcgtgtctgagtttcagacaagaatgctctttaaccaagca 2195
Query: 228 ttcagcagaggtctgcagatctcccgtat 256
|| |||||||| ||||||| || |||||
Sbjct: 2196 tttagcagaggattgcagatttcacgtat 2224
>ref|NM_179847.1| Arabidopsis thaliana ATGSL03 (GLUCAN SYNTHASE-LIKE 3);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT2G31960 (ATGSL03) mRNA, complete cds
Length = 5880
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 168 ttccttgcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggcc 227
||||| || ||||||||||||||||| ||||| ||||| || ||||| || ||||| ||
Sbjct: 5746 ttcctggcttggttcccgttcgtgtctgagtttcagacaagaatgctctttaaccaagca 5805
Query: 228 ttcagcagaggtctgcagatctcccgtat 256
|| |||||||| ||||||| || |||||
Sbjct: 5806 tttagcagaggattgcagatttcacgtat 5834
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 168 ttccttgcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggcc 227
||||| || ||||||||||||||||| ||||| ||||| || ||||| || ||||| ||
Sbjct: 13607009 ttcctggcttggttcccgttcgtgtctgagtttcagacaagaatgctctttaaccaagca 13607068
Query: 228 ttcagcagaggtctgcagatctcccgtat 256
|| |||||||| ||||||| || |||||
Sbjct: 13607069 tttagcagaggattgcagatttcacgtat 13607097
Score = 40.1 bits (20), Expect = 0.44
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||| || ||||||||||| ||| | || ||||| || ||||| ||| |
Sbjct: 5713109 tggttccctttcgtctctgagttccagacaaggcttctcttcaatcaagcctttagccgt 5713168
Query: 237 ggtctgcagatc 248
||||| ||||||
Sbjct: 5713169 ggtctccagatc 5713180
>gb|BX836766.1|BX836766 BX836766 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB52ZE04 3PRIM, mRNA sequence
Length = 1060
Score = 56.0 bits (28), Expect = 7e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 174 gcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagc 233
|||||||| || |||||||| ||||||||||| || ||||| || ||||| ||||| ||
Sbjct: 219 gcctggtttcctttcgtgtctgagttccagacaagaatgctctttaaccaagcctttagt 160
Query: 234 agaggtct 241
||||||||
Sbjct: 159 agaggtct 152
Score = 44.1 bits (22), Expect = 0.028
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 18 cttgccttcatgcccactggatgggg 43
|||||||||||||| |||||||||||
Sbjct: 385 cttgccttcatgccaactggatgggg 360
>emb|AL759226.1| Arabidopsis thaliana T-DNA flanking sequence GK-166G08-013366,
genomic survey sequence
Length = 546
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 174 gcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagc 233
||||||||||| ||| | || |||||||| || || ||||| || ||||| ||||| |||
Sbjct: 426 gcctggttcccattcatatcggagttccaaacgagaatgctctttaaccaagcctttagc 367
Query: 234 agaggtctgcagatctcccgtat 256
|||||||| || ||||| |||||
Sbjct: 366 agaggtctacatatctcacgtat 344
>gb|AI996136.1|AI996136 701550178 A. thaliana, Columbia Col-0, inflorescence-2 Arabidopsis
thaliana cDNA clone 701550178, mRNA sequence
Length = 626
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 174 gcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagc 233
|||||||| || || ||||| ||||||||||| || ||||| || ||||| ||||| ||
Sbjct: 303 gcctggtttccttttgtgtctgagttccagacaagaatgctctttaaccaagcctttagt 244
Query: 234 agaggtctgcagatctcccgtat 256
|||||||| || ||||| |||||
Sbjct: 243 agaggtctacaaatctctcgtat 221
>gb|AV546456.1|AV546456 AV546456 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL14d09F 3', mRNA sequence
Length = 281
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 174 gcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagc 233
|||||||| || || ||||| ||||||||||| || ||||| || ||||| ||||| ||
Sbjct: 258 gcctggtttccttttgtgtctgagttccagacaagaatgctctttaaccaagcctttagt 199
Query: 234 agaggtctgcagatctcccgtat 256
|||||||| || ||||| |||||
Sbjct: 198 agaggtctacaaatctctcgtat 176
>gb|AV546514.1|AV546514 AV546514 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL15c03F 3', mRNA sequence
Length = 544
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 174 gcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagc 233
|||||||| || || ||||| ||||||||||| || ||||| || ||||| ||||| ||
Sbjct: 256 gcctggtttccttttgtgtctgagttccagacaagaatgctctttaaccaagcctttagt 197
Query: 234 agaggtctgcagatctcccgtat 256
|||||||| || ||||| |||||
Sbjct: 196 agaggtctacaaatctctcgtat 174
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 12 tgcatccttgccttcatgcccactggatggggtttgctcctgattgcccaagc 64
||||| |||||||||||||| ||||||||||| |||| || ||||| |||||
Sbjct: 418 tgcatgcttgccttcatgccaactggatggggaatgcttctcattgcacaagc 366
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 174 gcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagc 233
|||||||| || || ||||| ||||||||||| || ||||| || ||||| ||||| ||
Sbjct: 1647884 gcctggtttccttttgtgtctgagttccagacaagaatgctctttaaccaagcctttagt 1647825
Query: 234 agaggtctgcagatctcccgtat 256
|||||||| || ||||| |||||
Sbjct: 1647824 agaggtctacaaatctctcgtat 1647802
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 12 tgcatccttgccttcatgcccactggatgggg 43
||||| |||||||||||||| |||||||||||
Sbjct: 1648144 tgcatgcttgccttcatgccaactggatgggg 1648113
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 493 tgctatggtcttttggattgga 514
||||||||||||||||||||||
Sbjct: 7245151 tgctatggtcttttggattgga 7245130
>gb|AF237733.1|AF237733 Arabidopsis thaliana callose synthase 1 catalytic subunit (CalS1)
mRNA, complete cds
Length = 6007
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 174 gcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagc 233
|||||||| || || ||||| ||||||||||| || ||||| || ||||| ||||| ||
Sbjct: 5734 gcctggtttccttttgtgtctgagttccagacaagaatgctctttaaccaagcctttagt 5793
Query: 234 agaggtctgcagatctcccgtat 256
|||||||| || ||||| |||||
Sbjct: 5794 agaggtctacaaatctctcgtat 5816
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 12 tgcatccttgccttcatgcccactggatggggtttgctcctgattgcccaagc 64
||||| |||||||||||||| ||||||||||| |||| || ||||| |||||
Sbjct: 5572 tgcatgcttgccttcatgccaactggatggggaatgcttctcattgcacaagc 5624
>emb|AX412747.1| Sequence 511 from Patent WO0222675
Length = 5577
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 174 gcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagc 233
|||||||| || || ||||| ||||||||||| || ||||| || ||||| ||||| ||
Sbjct: 5449 gcctggtttccttttgtgtctgagttccagacaagaatgctctttaaccaagcctttagt 5508
Query: 234 agaggtctgcagatctcccgtat 256
|||||||| || ||||| |||||
Sbjct: 5509 agaggtctacaaatctctcgtat 5531
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 12 tgcatccttgccttcatgcccactggatggggtttgctcctgattgcccaagc 64
||||| |||||||||||||| ||||||||||| |||| || ||||| |||||
Sbjct: 5287 tgcatgcttgccttcatgccaactggatggggaatgcttctcattgcacaagc 5339
>emb|AX441264.1| Sequence 18 from Patent EP1209228
Length = 2000
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 174 gcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagc 233
|||||||| || || ||||| ||||||||||| || ||||| || ||||| ||||| ||
Sbjct: 1226 gcctggtttccttttgtgtctgagttccagacaagaatgctctttaaccaagcctttagt 1285
Query: 234 agaggtctgcagatctcccgtat 256
|||||||| || ||||| |||||
Sbjct: 1286 agaggtctacaaatctctcgtat 1308
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 12 tgcatccttgccttcatgcccactggatgggg 43
||||| |||||||||||||| |||||||||||
Sbjct: 966 tgcatgcttgccttcatgccaactggatgggg 997
>emb|AX508002.1| Sequence 2697 from Patent WO0216655
Length = 5577
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 174 gcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagc 233
|||||||| || || ||||| ||||||||||| || ||||| || ||||| ||||| ||
Sbjct: 5449 gcctggtttccttttgtgtctgagttccagacaagaatgctctttaaccaagcctttagt 5508
Query: 234 agaggtctgcagatctcccgtat 256
|||||||| || ||||| |||||
Sbjct: 5509 agaggtctacaaatctctcgtat 5531
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 12 tgcatccttgccttcatgcccactggatggggtttgctcctgattgcccaagc 64
||||| |||||||||||||| ||||||||||| |||| || ||||| |||||
Sbjct: 5287 tgcatgcttgccttcatgccaactggatggggaatgcttctcattgcacaagc 5339
>dbj|BD181338.1| A stress-responsive promoter
Length = 2000
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 174 gcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagc 233
|||||||| || || ||||| ||||||||||| || ||||| || ||||| ||||| ||
Sbjct: 1226 gcctggtttccttttgtgtctgagttccagacaagaatgctctttaaccaagcctttagt 1285
Query: 234 agaggtctgcagatctcccgtat 256
|||||||| || ||||| |||||
Sbjct: 1286 agaggtctacaaatctctcgtat 1308
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 12 tgcatccttgccttcatgcccactggatgggg 43
||||| |||||||||||||| |||||||||||
Sbjct: 966 tgcatgcttgccttcatgccaactggatgggg 997
>gb|AC007153.2| Arabidopsis thaliana chromosome I BAC F3F20 genomic sequence, complete
sequence
Length = 103223
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 174 gcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagc 233
|||||||| || || ||||| ||||||||||| || ||||| || ||||| ||||| ||
Sbjct: 29532 gcctggtttccttttgtgtctgagttccagacaagaatgctctttaaccaagcctttagt 29473
Query: 234 agaggtctgcagatctcccgtat 256
|||||||| || ||||| |||||
Sbjct: 29472 agaggtctacaaatctctcgtat 29450
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 12 tgcatccttgccttcatgcccactggatgggg 43
||||| |||||||||||||| |||||||||||
Sbjct: 29792 tgcatgcttgccttcatgccaactggatgggg 29761
>gb|AC005106.2|AC005106 Genomic sequence for Arabidopsis thaliana BAC T25N20 from chromosome I,
complete sequence
Length = 84203
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 174 gcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagc 233
|||||||| || || ||||| ||||||||||| || ||||| || ||||| ||||| ||
Sbjct: 80081 gcctggtttccttttgtgtctgagttccagacaagaatgctctttaaccaagcctttagt 80022
Query: 234 agaggtctgcagatctcccgtat 256
|||||||| || ||||| |||||
Sbjct: 80021 agaggtctacaaatctctcgtat 79999
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 12 tgcatccttgccttcatgcccactggatgggg 43
||||| |||||||||||||| |||||||||||
Sbjct: 80341 tgcatgcttgccttcatgccaactggatgggg 80310
>dbj|AB025605.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F5H8
Length = 70098
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 174 gcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagc 233
||||||||||| ||| | || |||||||| || || ||||| || ||||| ||||| |||
Sbjct: 63618 gcctggttcccattcatatcggagttccaaacgagaatgctctttaaccaagcctttagc 63677
Query: 234 agaggtctgcagatctcccgtat 256
|||||||| || ||||| |||||
Sbjct: 63678 agaggtctacatatctcacgtat 63700
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 174 gcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagc 233
||||||||||| ||| | || |||||||| || || ||||| || ||||| ||||| |||
Sbjct: 13467177 gcctggttcccattcatatcggagttccaaacgagaatgctctttaaccaagcctttagc 13467236
Query: 234 agaggtctgcagatctcccgtat 256
|||||||| || ||||| |||||
Sbjct: 13467237 agaggtctacatatctcacgtat 13467259
>ref|NM_123045.2| Arabidopsis thaliana ATGSL09 (GLUCAN SYNTHASE-LIKE 9);
1,3-beta-glucan synthase AT5G36870 (ATGSL09) mRNA,
complete cds
Length = 5589
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 174 gcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagc 233
||||||||||| ||| | || |||||||| || || ||||| || ||||| ||||| |||
Sbjct: 5461 gcctggttcccattcatatcggagttccaaacgagaatgctctttaaccaagcctttagc 5520
Query: 234 agaggtctgcagatctcccgtat 256
|||||||| || ||||| |||||
Sbjct: 5521 agaggtctacatatctcacgtat 5543
>ref|NM_100436.2| Arabidopsis thaliana CALS1 (CALLOSE SYNTHASE 1); transferase,
transferring glycosyl groups AT1G05570 (CALS1) mRNA,
complete cds
Length = 6022
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 174 gcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagc 233
|||||||| || || ||||| ||||||||||| || ||||| || ||||| ||||| ||
Sbjct: 5734 gcctggtttccttttgtgtctgagttccagacaagaatgctctttaaccaagcctttagt 5793
Query: 234 agaggtctgcagatctcccgtat 256
|||||||| || ||||| |||||
Sbjct: 5794 agaggtctacaaatctctcgtat 5816
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 12 tgcatccttgccttcatgcccactggatggggtttgctcctgattgcccaagc 64
||||| |||||||||||||| ||||||||||| |||| || ||||| |||||
Sbjct: 5572 tgcatgcttgccttcatgccaactggatggggaatgcttctcattgcacaagc 5624
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 174 gcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagc 233
||||||||||| ||| | || |||||||| || || ||||| || ||||| ||||| |||
Sbjct: 14551032 gcctggttcccattcatatcggagttccaaacgagaatgctctttaaccaagcctttagc 14551091
Query: 234 agaggtctgcagatctcccgtat 256
|||||||| || ||||| |||||
Sbjct: 14551092 agaggtctacatatctcacgtat 14551114
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 174 gcctggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagc 233
|||||||| || || ||||| ||||||||||| || ||||| || ||||| ||||| ||
Sbjct: 1648007 gcctggtttccttttgtgtctgagttccagacaagaatgctctttaaccaagcctttagt 1647948
Query: 234 agaggtctgcagatctcccgtat 256
|||||||| || ||||| |||||
Sbjct: 1647947 agaggtctacaaatctctcgtat 1647925
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 12 tgcatccttgccttcatgcccactggatgggg 43
||||| |||||||||||||| |||||||||||
Sbjct: 1648267 tgcatgcttgccttcatgccaactggatgggg 1648236
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 493 tgctatggtcttttggattgga 514
||||||||||||||||||||||
Sbjct: 7245327 tgctatggtcttttggattgga 7245306
>emb|BX819158.1|CNS0A8YL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB52ZD04 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1385
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
||||||||||||||||| ||||| ||||| || ||||| || ||||| || || ||||||
Sbjct: 1191 tggttcccgttcgtgtctgagtttcagacaagaatgctctttaaccaagcatttagcaga 1250
Query: 237 gg 238
||
Sbjct: 1251 gg 1252
>gb|AU228526.1|AU228526 AU228526 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-26-N18 3',
mRNA sequence
Length = 423
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 12 tgcatccttgccttcatgcccactggatggggtttgctcctgattgcccaagc 64
||||| |||||||||||||| ||||||||||| |||| || ||||| |||||
Sbjct: 416 tgcatgcttgccttcatgccaactggatggggaatgcttctcattgcacaagc 364
>gb|BP639761.1|BP639761 BP639761 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-49-A17 3',
mRNA sequence
Length = 406
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 493 tgctatggtcttttggattggaa 515
|||||||||||||||||||||||
Sbjct: 396 tgctatggtcttttggattggaa 374
>gb|AQ250012.1|AQ250012 T8O20-T7.1 TAMU Arabidopsis thaliana genomic clone T8O20, DNA
sequence
Length = 663
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 493 tgctatggtcttttggattgga 514
||||||||||||||||||||||
Sbjct: 185 tgctatggtcttttggattgga 164
>gb|AA712259.1|AA712259 31987 Lambda-PRL2 Arabidopsis thaliana cDNA clone 183P19T7, mRNA
sequence
Length = 419
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 493 tgctatggtcttttggattgga 514
||||||||||||||||||||||
Sbjct: 17 tgctatggtcttttggattgga 38
>gb|R65557.1|R65557 14061 Lambda-PRL2 Arabidopsis thaliana cDNA clone 173D15T7, mRNA
sequence
Length = 496
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 493 tgctatggtcttttggattgga 514
||||||||||||||||||||||
Sbjct: 215 tgctatggtcttttggattgga 236
>gb|T75686.1|T75686 10464 Lambda-PRL2 Arabidopsis thaliana cDNA clone 142J14T7, mRNA
sequence
Length = 379
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 493 tgctatggtcttttggattgga 514
||||||||||||||||||||||
Sbjct: 17 tgctatggtcttttggattgga 38
>gb|AV814153.1|AV814153 AV814153 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-81-O15 3',
mRNA sequence
Length = 410
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 493 tgctatggtcttttggattgga 514
||||||||||||||||||||||
Sbjct: 403 tgctatggtcttttggattgga 382
>gb|AV534683.1|AV534683 AV534683 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB084c02F 3', mRNA sequence
Length = 455
Score = 44.1 bits (22), Expect = 0.028
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 15 atccttgccttcatgcccactggatggggtttgctcctgattgcccaagc 64
||||||||||| |||||||| || ||||| ||||| ||||||| |||||
Sbjct: 438 atccttgcctttatgcccacaggttgggggatgctcttgattgcgcaagc 389
>gb|AV546664.1|AV546664 AV546664 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL17f10F 3', mRNA sequence
Length = 480
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 493 tgctatggtcttttggattgga 514
||||||||||||||||||||||
Sbjct: 332 tgctatggtcttttggattgga 311
>gb|AV548888.1|AV548888 AV548888 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL64b03F 3', mRNA sequence
Length = 394
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 493 tgctatggtcttttggattgga 514
||||||||||||||||||||||
Sbjct: 388 tgctatggtcttttggattgga 367
>gb|BP602184.1|BP602184 BP602184 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-53-L05 3',
mRNA sequence
Length = 431
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 493 tgctatggtcttttggattgga 514
||||||||||||||||||||||
Sbjct: 400 tgctatggtcttttggattgga 379
>gb|BP603316.1|BP603316 BP603316 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-58-E23 3',
mRNA sequence
Length = 435
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 493 tgctatggtcttttggattgga 514
||||||||||||||||||||||
Sbjct: 401 tgctatggtcttttggattgga 380
>gb|BP647849.1|BP647849 BP647849 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-76-L14 3',
mRNA sequence
Length = 427
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 493 tgctatggtcttttggattgga 514
||||||||||||||||||||||
Sbjct: 399 tgctatggtcttttggattgga 378
>emb|Z50752.1|ATSUGTRPR A.thaliana mRNA for sugar transporter
Length = 2426
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 493 tgctatggtcttttggattgga 514
||||||||||||||||||||||
Sbjct: 2010 tgctatggtcttttggattgga 2031
>emb|AX412656.1| Sequence 420 from Patent WO0222675
Length = 2205
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 493 tgctatggtcttttggattgga 514
||||||||||||||||||||||
Sbjct: 1974 tgctatggtcttttggattgga 1995
>emb|AX507559.1| Sequence 2254 from Patent WO0216655
Length = 2205
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 493 tgctatggtcttttggattgga 514
||||||||||||||||||||||
Sbjct: 1974 tgctatggtcttttggattgga 1995
>gb|AC007369.2| Arabidopsis thaliana chromosome I BAC F9H16 genomic sequence, complete
sequence
Length = 103192
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 493 tgctatggtcttttggattgga 514
||||||||||||||||||||||
Sbjct: 102535 tgctatggtcttttggattgga 102556
>gb|AC069251.5|AC069251 Genomic sequence for Arabidopsis thaliana BAC F2D10 from chromosome I,
complete sequence
Length = 143879
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 493 tgctatggtcttttggattgga 514
||||||||||||||||||||||
Sbjct: 135795 tgctatggtcttttggattgga 135774
>ref|NM_101937.3| Arabidopsis thaliana carbohydrate transporter/ nucleoside
transporter/ sugar porter AT1G20840 mRNA, complete cds
Length = 2488
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 493 tgctatggtcttttggattgga 514
||||||||||||||||||||||
Sbjct: 2089 tgctatggtcttttggattgga 2110
>ref|NM_121303.3| Arabidopsis thaliana ATGSL12 (GLUCAN SYNTHASE-LIKE 12);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT5G13000 (ATGSL12) mRNA, complete cds
Length = 6194
Score = 44.1 bits (22), Expect = 0.028
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 15 atccttgccttcatgcccactggatggggtttgctcctgattgcccaagc 64
||||||||||| |||||||| || ||||| ||||| ||||||| |||||
Sbjct: 5757 atccttgcctttatgcccacaggttgggggatgctcttgattgcgcaagc 5806
>gb|AQ957761.1|AQ957761 LERAR55TF LERA Arabidopsis thaliana genomic clone LERAR55, DNA
sequence
Length = 668
Score = 40.1 bits (20), Expect = 0.44
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||| || ||||||||||| ||| | || ||||| || ||||| ||| |
Sbjct: 177 tggttccctttcgtctctgagttccagacaaggcttctcttcaatcaagcctttagccgt 236
Query: 237 ggtctgcagatc 248
||||| ||||||
Sbjct: 237 ggtctccagatc 248
>gb|AU229339.1|AU229339 AU229339 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-92-B13 3',
mRNA sequence
Length = 247
Score = 40.1 bits (20), Expect = 0.44
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 180 ttcccgttcgtgtccgagttccagaccaggatgctgttcaacca 223
|||||||||||||| ||||| ||||| || ||||| || |||||
Sbjct: 247 ttcccgttcgtgtctgagtttcagacaagaatgctctttaacca 204
>gb|AF080118.1|F8M12 Arabidopsis thaliana BAC F8M12
Length = 103673
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 468 cctatgtatatgtatgtatc 487
||||||||||||||||||||
Sbjct: 53935 cctatgtatatgtatgtatc 53954
>gb|AC006436.5| Arabidopsis thaliana chromosome 2 clone F13J11 map mi398, complete
sequence
Length = 104009
Score = 40.1 bits (20), Expect = 0.44
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
|||||||| ||||| || ||||||||||| ||| | || ||||| || ||||| ||| |
Sbjct: 14252 tggttccctttcgtctctgagttccagacaaggcttctcttcaatcaagcctttagccgt 14311
Query: 237 ggtctgcagatc 248
||||| ||||||
Sbjct: 14312 ggtctccagatc 14323
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 204,609
Number of Sequences: 1013581
Number of extensions: 204609
Number of successful extensions: 16252
Number of sequences better than 0.5: 59
Number of HSP's better than 0.5 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15254
Number of HSP's gapped (non-prelim): 998
length of query: 620
length of database: 908,940,872
effective HSP length: 20
effective length of query: 600
effective length of database: 888,669,252
effective search space: 533201551200
effective search space used: 533201551200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)