BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131591.2.2
(1252 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AL080336.1|CNS00M9E Arabidopsis thaliana genome survey ... 70 1e-009
emb|AL082814.1|CNS00O68 Arabidopsis thaliana genome survey ... 70 1e-009
gb|Z26030.1|Z26030 ATTS1307 Grenoble-B Arabidopsis thaliana... 70 1e-009
gb|AI996383.1|AI996383 701665177 A. thaliana, Columbia Col-... 70 1e-009
gb|AV825901.1|AV825901 AV825901 RAFL7 Arabidopsis thaliana ... 70 1e-009
gb|BU636174.1|BU636174 046G10 Infected Arabidopsis Leaf Ara... 70 1e-009
gb|AV557618.1|AV557618 AV557618 Arabidopsis thaliana green ... 70 1e-009
gb|BP574705.1|BP574705 BP574705 RAFL14 Arabidopsis thaliana... 70 1e-009
gb|BP657128.1|BP657128 BP657128 RAFL19 Arabidopsis thaliana... 70 1e-009
gb|BP670272.1|BP670272 BP670272 RAFL21 Arabidopsis thaliana... 70 1e-009
gb|AF102822.1|AF102822 Arabidopsis thaliana actin depolymer... 70 1e-009
gb|AY050460.1| Arabidopsis thaliana AT5g59890/mmn10_110 mRN... 70 1e-009
gb|AY090336.1| Arabidopsis thaliana At1g05180/YUP8H12_21 mR... 70 1e-009
gb|AY084757.1| Arabidopsis thaliana clone 11691 mRNA, compl... 70 1e-009
dbj|AB015475.1| Arabidopsis thaliana genomic DNA, chromosom... 70 1e-009
emb|CQ804968.1| Sequence 1379 from Patent WO2004035798 70 1e-009
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 70 1e-009
ref|NM_180897.1| Arabidopsis thaliana ADF4 (ACTIN DEPOLYMER... 70 1e-009
ref|NM_125382.2| Arabidopsis thaliana ADF4 (ACTIN DEPOLYMER... 70 1e-009
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 70 1e-009
gb|CB263810.1|CB263810 08-E8976-008-017-P01-pBl2 MPIZ-ADIS-... 68 4e-009
gb|BP607304.1|BP607304 BP607304 RAFL16 Arabidopsis thaliana... 64 6e-008
gb|BP851449.1|BP851449 BP851449 RAFL21 Arabidopsis thaliana... 62 2e-007
gb|BP825182.1|BP825182 BP825182 RAFL19 Arabidopsis thaliana... 60 1e-006
gb|BP865524.1|BP865524 BP865524 RAFL21 Arabidopsis thaliana... 60 1e-006
gb|BP639457.1|BP639457 BP639457 RAFL19 Arabidopsis thaliana... 56 2e-005
gb|BP642161.1|BP642161 BP642161 RAFL19 Arabidopsis thaliana... 54 6e-005
gb|Z26429.1|Z26429 ATTS1556 Strasbourg-A Arabidopsis thalia... 52 2e-004
gb|AV551435.1|AV551435 AV551435 Arabidopsis thaliana roots ... 52 2e-004
gb|AV552018.1|AV552018 AV552018 Arabidopsis thaliana roots ... 52 2e-004
gb|AV559088.1|AV559088 AV559088 Arabidopsis thaliana green ... 52 2e-004
gb|AY099657.1| Arabidopsis thaliana putative phenylalanine ... 52 2e-004
gb|BT000252.1| Arabidopsis thaliana putative phenylalanine ... 52 2e-004
gb|AC009400.4|ATAC009400 Arabidopsis thaliana chromosome II... 52 2e-004
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 52 2e-004
gb|AY303130.1| Arabidopsis thaliana phenylalanine ammonia l... 52 2e-004
ref|NM_111869.3| Arabidopsis thaliana ammonia ligase/ ammon... 52 2e-004
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 52 2e-004
gb|BP861023.1|BP861023 BP861023 RAFL21 Arabidopsis thaliana... 50 0.001
emb|AL769391.1| Arabidopsis thaliana T-DNA flanking sequenc... 48 0.004
gb|AA042232.1|AA042232 24553 CD4-13 Arabidopsis thaliana cD... 48 0.004
gb|T04216.1|T04216 263 Lambda-PRL2 Arabidopsis thaliana cDN... 48 0.004
gb|AV782149.1|AV782149 AV782149 RAFL4 Arabidopsis thaliana ... 48 0.004
gb|AV821637.1|AV821637 AV821637 RAFL4 Arabidopsis thaliana ... 48 0.004
gb|AV828617.1|AV828617 AV828617 RAFL9 Arabidopsis thaliana ... 48 0.004
gb|U48938.1|ATU48938 Arabidopsis thaliana actin depolymeriz... 48 0.004
gb|AF102173.1|AF102173 Arabidopsis thaliana actin depolymer... 48 0.004
gb|AY035154.1| Arabidopsis thaliana putative actin depolyme... 48 0.004
gb|AY062940.1| Arabidopsis thaliana putative actin depolyme... 48 0.004
gb|AY085853.1| Arabidopsis thaliana clone 1907 mRNA, comple... 48 0.004
emb|BX826248.1|CNS0A69V Arabidopsis thaliana Full-length cD... 48 0.004
emb|AL162459.2|ATF16L2 Arabidopsis thaliana DNA chromosome ... 48 0.004
ref|NM_114470.1| Arabidopsis thaliana ADF1 (ACTIN DEPOLYMER... 48 0.004
gb|CB262585.1|CB262585 55-E9724-008-016-N14-pBl2 MPIZ-ADIS-... 44 0.058
gb|CB263779.1|CB263779 08-E9864-008-019-P01-pbl2 MPIZ-ADIS-... 44 0.058
gb|CB263836.1|CB263836 07-E020819-008-019-B02q-pBl2 MPIZ-AD... 44 0.058
gb|CB263857.1|CB263857 06-E020819-008-019-P01q-pBl2 MPIZ-AD... 44 0.058
gb|CB263977.1|CB263977 01-E9865-008-019-B02-pbl2 MPIZ-ADIS-... 44 0.058
emb|AL081551.1|CNS00N75 Arabidopsis thaliana genome survey ... 42 0.23
gb|AA041048.1|AA041048 24314 CD4-13 Arabidopsis thaliana cD... 42 0.23
gb|T04279.1|T04279 326 Lambda-PRL2 Arabidopsis thaliana cDN... 42 0.23
gb|H76138.1|H76138 17843 Lambda-PRL2 Arabidopsis thaliana c... 42 0.23
gb|BE037591.1|BE037591 AA01E11 AA Arabidopsis thaliana cDNA... 42 0.23
gb|BE038277.1|BE038277 AA11D05 AA Arabidopsis thaliana cDNA... 42 0.23
gb|AV832182.1|AV832182 AV832182 RAFL11 Arabidopsis thaliana... 42 0.23
gb|CF651679.1|CF651679 08-L020580-066-004-P02-SP6P MPIZ-ADI... 42 0.23
gb|CF652988.1|CF652988 88-L020833-066-004-P02q-SP6P MPIZ-AD... 42 0.23
gb|CK118123.1|CK118123 218a12.p1 AtM1 Arabidopsis thaliana ... 42 0.23
gb|BP572867.1|BP572867 BP572867 RAFL14 Arabidopsis thaliana... 42 0.23
gb|BP585627.1|BP585627 BP585627 RAFL15 Arabidopsis thaliana... 42 0.23
gb|BP593313.1|BP593313 BP593313 RAFL15 Arabidopsis thaliana... 42 0.23
gb|BP596250.1|BP596250 BP596250 RAFL15 Arabidopsis thaliana... 42 0.23
gb|BP562647.2|BP562647 BP562647 RAFL11 Arabidopsis thaliana... 42 0.23
gb|BP849844.1|BP849844 BP849844 RAFL21 Arabidopsis thaliana... 42 0.23
gb|BP852223.1|BP852223 BP852223 RAFL21 Arabidopsis thaliana... 42 0.23
gb|BP855349.1|BP855349 BP855349 RAFL21 Arabidopsis thaliana... 42 0.23
gb|BP860313.1|BP860313 BP860313 RAFL21 Arabidopsis thaliana... 42 0.23
gb|BP864963.1|BP864963 BP864963 RAFL21 Arabidopsis thaliana... 42 0.23
gb|U48939.1|ATU48939 Arabidopsis thaliana actin depolymeriz... 42 0.23
gb|AF370482.1|AF370482 Arabidopsis thaliana actin depolymer... 42 0.23
gb|AF386925.1|AF386925 Arabidopsis thaliana actin depolymer... 42 0.23
gb|AY064660.1| Arabidopsis thaliana actin depolymerizing fa... 42 0.23
gb|BT000377.1| Arabidopsis thaliana actin depolymerizing fa... 42 0.23
gb|AY089214.1| Arabidopsis thaliana clone 99657 mRNA, compl... 42 0.23
emb|BX823115.1|CNS0A784 Arabidopsis thaliana Full-length cD... 42 0.23
ref|NM_114469.2| Arabidopsis thaliana ADF2 (ACTIN DEPOLYMER... 42 0.23
>emb|AL080336.1|CNS00M9E Arabidopsis thaliana genome survey sequence T7 end of BAC F1A13 of
IGF library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 525
Score = 69.9 bits (35), Expect = 1e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagcagg 790
||||||||||| || ||||||||||||||||| ||||||||| || ||||||||||| |
Sbjct: 220 tgccgatacgccatttatgatttcgactttgtcactgcagagaattgccagaagagcaag 161
Query: 791 atcttct 797
|| ||||
Sbjct: 160 attttct 154
>emb|AL082814.1|CNS00O68 Arabidopsis thaliana genome survey sequence SP6 end of BAC F5J14 of
IGF library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 408
Score = 69.9 bits (35), Expect = 1e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagcagg 790
||||||||||| || ||||||||||||||||| ||||||||| || ||||||||||| |
Sbjct: 245 tgccgatacgccatttatgatttcgactttgtcactgcagagaattgccagaagagcaag 186
Query: 791 atcttct 797
|| ||||
Sbjct: 185 attttct 179
>gb|Z26030.1|Z26030 ATTS1307 Grenoble-B Arabidopsis thaliana cDNA clone GBGe170, mRNA
sequence
Length = 655
Score = 69.9 bits (35), Expect = 1e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagcagg 790
||||||||||| || ||||||||||||||||| ||||||||| || ||||||||||| |
Sbjct: 256 tgccgatacgccatttatgatttcgactttgtcactgcagagaattgccagaagagcaag 315
Query: 791 atcttct 797
|| ||||
Sbjct: 316 attttct 322
>gb|AI996383.1|AI996383 701665177 A. thaliana, Columbia Col-0, root-1 Arabidopsis thaliana
cDNA clone 701665177, mRNA sequence
Length = 573
Score = 69.9 bits (35), Expect = 1e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagcagg 790
||||||||||| || ||||||||||||||||| ||||||||| || ||||||||||| |
Sbjct: 398 tgccgatacgccatttatgatttcgactttgtcactgcagagaattgccagaagagcaag 339
Query: 791 atcttct 797
|| ||||
Sbjct: 338 attttct 332
>gb|AV825901.1|AV825901 AV825901 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-16-P12 5',
mRNA sequence
Length = 632
Score = 69.9 bits (35), Expect = 1e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagcagg 790
||||||||||| || ||||||||||||||||| ||||||||| || ||||||||||| |
Sbjct: 264 tgccgatacgccatttatgatttcgactttgtcactgcagagaattgccagaagagcaag 323
Query: 791 atcttct 797
|| ||||
Sbjct: 324 attttct 330
>gb|BU636174.1|BU636174 046G10 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 712
Score = 69.9 bits (35), Expect = 1e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagcagg 790
||||||||||| || ||||||||||||||||| ||||||||| || ||||||||||| |
Sbjct: 269 tgccgatacgccatttatgatttcgactttgtcactgcagagaattgccagaagagcaag 328
Query: 791 atcttct 797
|| ||||
Sbjct: 329 attttct 335
>gb|AV557618.1|AV557618 AV557618 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ073e11F 3', mRNA sequence
Length = 429
Score = 69.9 bits (35), Expect = 1e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagcagg 790
||||||||||| || ||||||||||||||||| ||||||||| || ||||||||||| |
Sbjct: 226 tgccgatacgccatttatgatttcgactttgtcactgcagagaattgccagaagagcaag 285
Query: 791 atcttct 797
|| ||||
Sbjct: 286 attttct 292
>gb|BP574705.1|BP574705 BP574705 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-89-D17 3',
mRNA sequence
Length = 410
Score = 69.9 bits (35), Expect = 1e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagcagg 790
||||||||||| || ||||||||||||||||| ||||||||| || ||||||||||| |
Sbjct: 406 tgccgatacgccatttatgatttcgactttgtcactgcagagaattgccagaagagcaag 347
Query: 791 atcttct 797
|| ||||
Sbjct: 346 attttct 340
>gb|BP657128.1|BP657128 BP657128 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-29-O10 3',
mRNA sequence
Length = 417
Score = 69.9 bits (35), Expect = 1e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagcagg 790
||||||||||| || ||||||||||||||||| ||||||||| || ||||||||||| |
Sbjct: 413 tgccgatacgccatttatgatttcgactttgtcactgcagagaattgccagaagagcaag 354
Query: 791 atcttct 797
|| ||||
Sbjct: 353 attttct 347
>gb|BP670272.1|BP670272 BP670272 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-34-H04 3',
mRNA sequence
Length = 416
Score = 69.9 bits (35), Expect = 1e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagcagg 790
||||||||||| || ||||||||||||||||| ||||||||| || ||||||||||| |
Sbjct: 400 tgccgatacgccatttatgatttcgactttgtcactgcagagaattgccagaagagcaag 341
Query: 791 atcttct 797
|| ||||
Sbjct: 340 attttct 334
>gb|AF102822.1|AF102822 Arabidopsis thaliana actin depolymerizing factor 4 (ADF4) mRNA,
complete cds
Length = 705
Score = 69.9 bits (35), Expect = 1e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagcagg 790
||||||||||| || ||||||||||||||||| ||||||||| || ||||||||||| |
Sbjct: 289 tgccgatacgccatttatgatttcgactttgtcactgcagagaattgccagaagagcaag 348
Query: 791 atcttct 797
|| ||||
Sbjct: 349 attttct 355
>gb|AY050460.1| Arabidopsis thaliana AT5g59890/mmn10_110 mRNA, complete cds
Length = 734
Score = 69.9 bits (35), Expect = 1e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagcagg 790
||||||||||| || ||||||||||||||||| ||||||||| || ||||||||||| |
Sbjct: 263 tgccgatacgccatttatgatttcgactttgtcactgcagagaattgccagaagagcaag 322
Query: 791 atcttct 797
|| ||||
Sbjct: 323 attttct 329
>gb|AY090336.1| Arabidopsis thaliana At1g05180/YUP8H12_21 mRNA, complete cds
Length = 399
Score = 69.9 bits (35), Expect = 1e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagcagg 790
||||||||||| || ||||||||||||||||| ||||||||| || ||||||||||| |
Sbjct: 172 tgccgatacgccatttatgatttcgactttgtcactgcagagaattgccagaagagcaag 231
Query: 791 atcttct 797
|| ||||
Sbjct: 232 attttct 238
>gb|AY084757.1| Arabidopsis thaliana clone 11691 mRNA, complete sequence
Length = 841
Score = 69.9 bits (35), Expect = 1e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagcagg 790
||||||||||| || ||||||||||||||||| ||||||||| || ||||||||||| |
Sbjct: 312 tgccgatacgccatttatgatttcgactttgtcactgcagagaattgccagaagagcaag 371
Query: 791 atcttct 797
|| ||||
Sbjct: 372 attttct 378
>dbj|AB015475.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMN10
Length = 84325
Score = 69.9 bits (35), Expect = 1e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagcagg 790
||||||||||| || ||||||||||||||||| ||||||||| || ||||||||||| |
Sbjct: 36745 tgccgatacgccatttatgatttcgactttgtcactgcagagaattgccagaagagcaag 36804
Query: 791 atcttct 797
|| ||||
Sbjct: 36805 attttct 36811
>emb|CQ804968.1| Sequence 1379 from Patent WO2004035798
Length = 420
Score = 69.9 bits (35), Expect = 1e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagcagg 790
||||||||||| || ||||||||||||||||| ||||||||| || ||||||||||| |
Sbjct: 193 tgccgatacgccatttatgatttcgactttgtcactgcagagaattgccagaagagcaag 252
Query: 791 atcttct 797
|| ||||
Sbjct: 253 attttct 259
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 69.9 bits (35), Expect = 1e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagcagg 790
||||||||||| || ||||||||||||||||| ||||||||| || ||||||||||| |
Sbjct: 21448591 tgccgatacgccatttatgatttcgactttgtcactgcagagaattgccagaagagcaag 21448650
Query: 791 atcttct 797
|| ||||
Sbjct: 21448651 attttct 21448657
>ref|NM_180897.1| Arabidopsis thaliana ADF4 (ACTIN DEPOLYMERIZING FACTOR 4); actin
binding AT5G59890 (ADF4) transcript variant AT5G59890.1
mRNA, complete cds
Length = 854
Score = 69.9 bits (35), Expect = 1e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagcagg 790
||||||||||| || ||||||||||||||||| ||||||||| || ||||||||||| |
Sbjct: 311 tgccgatacgccatttatgatttcgactttgtcactgcagagaattgccagaagagcaag 370
Query: 791 atcttct 797
|| ||||
Sbjct: 371 attttct 377
>ref|NM_125382.2| Arabidopsis thaliana ADF4 (ACTIN DEPOLYMERIZING FACTOR 4); actin
binding AT5G59890 (ADF4) transcript variant AT5G59890.2
mRNA, complete cds
Length = 807
Score = 69.9 bits (35), Expect = 1e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagcagg 790
||||||||||| || ||||||||||||||||| ||||||||| || ||||||||||| |
Sbjct: 264 tgccgatacgccatttatgatttcgactttgtcactgcagagaattgccagaagagcaag 323
Query: 791 atcttct 797
|| ||||
Sbjct: 324 attttct 330
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 69.9 bits (35), Expect = 1e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagcagg 790
||||||||||| || ||||||||||||||||| ||||||||| || ||||||||||| |
Sbjct: 24140504 tgccgatacgccatttatgatttcgactttgtcactgcagagaattgccagaagagcaag 24140563
Query: 791 atcttct 797
|| ||||
Sbjct: 24140564 attttct 24140570
>gb|CB263810.1|CB263810 08-E8976-008-017-P01-pBl2 MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767P0117Q 5-PRIME, mRNA sequence
Length = 336
Score = 67.9 bits (34), Expect = 4e-009
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagca 788
||||||||||| || ||||||||||||||||| ||||||||| || |||||||||||
Sbjct: 279 tgccgatacgccatttatgatttcgactttgtcactgcagagaattgccagaagagca 336
>gb|BP607304.1|BP607304 BP607304 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-74-F11 3',
mRNA sequence
Length = 418
Score = 63.9 bits (32), Expect = 6e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagag 786
||||||||||| || ||||||||||||||||| ||||||||| || |||||||||
Sbjct: 403 tgccgatacgccatttatgatttcgactttgtcactgcagagaattgccagaagag 348
>gb|BP851449.1|BP851449 BP851449 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-16-H07 5',
mRNA sequence
Length = 392
Score = 61.9 bits (31), Expect = 2e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagcagg 790
||||||||||| || |||||||||||||||| ||||||||| || ||||||||||| |
Sbjct: 256 tgccgatacgccattcatgatttcgactttgtcactgcagagaattgccagaagagcaag 315
Query: 791 atcttct 797
|| ||||
Sbjct: 316 attttct 322
>gb|BP825182.1|BP825182 BP825182 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-67-L18 5',
mRNA sequence
Length = 361
Score = 60.0 bits (30), Expect = 1e-006
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagag 772
||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 312 tgccgatacgccatttatgatttcgactttgtcactgcagag 353
>gb|BP865524.1|BP865524 BP865524 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-74-H22 5',
mRNA sequence
Length = 374
Score = 60.0 bits (30), Expect = 1e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagca 788
||||||||||| || ||||||||||||||||| |||| |||| || |||||||||||
Sbjct: 310 tgccgatacgccatttatgatttcgactttgtcactggagagaattgccagaagagca 367
>gb|BP639457.1|BP639457 BP639457 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-47-N17 3',
mRNA sequence
Length = 398
Score = 56.0 bits (28), Expect = 2e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 746 tatgatttcgactttgttactgcagaggatgtccagaagagcaggatcttct 797
||||||||||||||||| ||||||||| || ||||||||||| ||| ||||
Sbjct: 396 tatgatttcgactttgtcactgcagagaattgccagaagagcaagattttct 345
>gb|BP642161.1|BP642161 BP642161 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-57-L11 3',
mRNA sequence
Length = 436
Score = 54.0 bits (27), Expect = 6e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaagagcag 789
||||||||| | || ||||||||||||||||| |||||||| || ||||||||||||
Sbjct: 393 tgccgataccccatttatgatttcgactttgtcgctgcagagaattgccagaagagcag 335
>gb|Z26429.1|Z26429 ATTS1556 Strasbourg-A Arabidopsis thaliana cDNA clone FAFC80-1 5',
mRNA sequence
Length = 283
Score = 52.0 bits (26), Expect = 2e-004
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactgcagag 772
||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 242 tgccgatacgc-atttatgatttcgactttgtcactgcagag 282
>gb|AV551435.1|AV551435 AV551435 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ126g04R 5', mRNA sequence
Length = 549
Score = 52.0 bits (26), Expect = 2e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 58 agggagttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttg 117
||||| || ||||| ||||| |||||||| ||||| || || |||||||| | ||| ||
Sbjct: 171 agggaattaacgtcttggttatgctgctctgcgctttggacatggttggtcacgggatta 112
Query: 118 cccaggtactggagctcggagcagtaggacgccatggc 155
||||| |||| ||||||||||| || || ||||||||
Sbjct: 111 gccaggaactgaagctcggagcaataagaagccatggc 74
>gb|AV552018.1|AV552018 AV552018 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ19a05R 5', mRNA sequence
Length = 313
Score = 52.0 bits (26), Expect = 2e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 58 agggagttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttg 117
||||| || ||||| ||||| |||||||| ||||| || || |||||||| | ||| ||
Sbjct: 247 agggaattaacgtcttggttatgctgctctgcgctttggacatggttggtcacgggatta 188
Query: 118 cccaggtactggagctcggagcagtaggacgccatggc 155
||||| |||| ||||||||||| || || ||||||||
Sbjct: 187 gccaggaactgaagctcggagcaataagaagccatggc 150
>gb|AV559088.1|AV559088 AV559088 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ111a03F 3', mRNA sequence
Length = 422
Score = 52.0 bits (26), Expect = 2e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 58 agggagttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttg 117
||||| || ||||| ||||| |||||||| ||||| || || |||||||| | ||| ||
Sbjct: 345 agggaattaacgtcttggttatgctgctctgcgctttggacatggttggtcacgggatta 286
Query: 118 cccaggtactggagctcggagcagtaggacgccatggc 155
||||| |||| ||||||||||| || || ||||||||
Sbjct: 285 gccaggaactgaagctcggagcaataagaagccatggc 248
>gb|AY099657.1| Arabidopsis thaliana putative phenylalanine ammonia-lyase (At3g10340)
mRNA, complete cds
Length = 2536
Score = 52.0 bits (26), Expect = 2e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 58 agggagttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttg 117
||||| || ||||| ||||| |||||||| ||||| || || |||||||| | ||| ||
Sbjct: 1699 agggaattaacgtcttggttatgctgctctgcgctttggacatggttggtcacgggatta 1640
Query: 118 cccaggtactggagctcggagcagtaggacgccatggc 155
||||| |||| ||||||||||| || || ||||||||
Sbjct: 1639 gccaggaactgaagctcggagcaataagaagccatggc 1602
>gb|BT000252.1| Arabidopsis thaliana putative phenylalanine ammonia-lyase (At3g10340)
mRNA, complete cds
Length = 2229
Score = 52.0 bits (26), Expect = 2e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 58 agggagttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttg 117
||||| || ||||| ||||| |||||||| ||||| || || |||||||| | ||| ||
Sbjct: 1451 agggaattaacgtcttggttatgctgctctgcgctttggacatggttggtcacgggatta 1392
Query: 118 cccaggtactggagctcggagcagtaggacgccatggc 155
||||| |||| ||||||||||| || || ||||||||
Sbjct: 1391 gccaggaactgaagctcggagcaataagaagccatggc 1354
>gb|AC009400.4|ATAC009400 Arabidopsis thaliana chromosome III BAC F14P13 genomic sequence,
complete sequence
Length = 87937
Score = 52.0 bits (26), Expect = 2e-004
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 58 agggagttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttg 117
||||| || ||||| ||||| |||||||| ||||| || || |||||||| | ||| ||
Sbjct: 23630 agggaattaacgtcttggttatgctgctctgcgctttggacatggttggtcacgggatta 23689
Query: 118 cccaggtactggagctcggagcagtaggacgccatggc 155
||||| |||| ||||||||||| || || ||||||||
Sbjct: 23690 gccaggaactgaagctcggagcaataagaagccatggc 23727
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 52.0 bits (26), Expect = 2e-004
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 58 agggagttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttg 117
||||| || ||||| ||||| |||||||| ||||| || || |||||||| | ||| ||
Sbjct: 3162437 agggaattaacgtcttggttatgctgctctgcgctttggacatggttggtcacgggatta 3162496
Query: 118 cccaggtactggagctcggagcagtaggacgccatggc 155
||||| |||| ||||||||||| || || ||||||||
Sbjct: 3162497 gccaggaactgaagctcggagcaataagaagccatggc 3162534
Score = 48.1 bits (24), Expect = 0.004
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 726 atgactgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaaga 785
|||| ||||| ||||| || || ||||| |||||||| ||||| ||| || ||||||||
Sbjct: 16874062 atgaatgccgttacgccatttacgattttgactttgtaactgctgagaattgccagaaga 16874003
Query: 786 gcaggatcttct 797
||| ||||||||
Sbjct: 16874002 gcaagatcttct 16873991
Score = 42.1 bits (21), Expect = 0.23
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 749 gatttcgactttgttactgcagaggatgtccagaagagcaggatcttct 797
|||||||||||||| ||||| ||| | ||||||||||| ||||||||
Sbjct: 16872080 gatttcgactttgtcactgcggagaactgccagaagagcaagatcttct 16872032
>gb|AY303130.1| Arabidopsis thaliana phenylalanine ammonia lyase (PAL4) mRNA,
complete cds
Length = 2124
Score = 52.0 bits (26), Expect = 2e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 58 agggagttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttg 117
||||| || ||||| ||||| |||||||| ||||| || || |||||||| | ||| ||
Sbjct: 1451 agggaattaacgtcttggttatgctgctctgcgctttggacatggttggtcacgggatta 1392
Query: 118 cccaggtactggagctcggagcagtaggacgccatggc 155
||||| |||| ||||||||||| || || ||||||||
Sbjct: 1391 gccaggaactgaagctcggagcaataagaagccatggc 1354
>ref|NM_111869.3| Arabidopsis thaliana ammonia ligase/ ammonia-lyase AT3G10340 mRNA,
complete cds
Length = 2584
Score = 52.0 bits (26), Expect = 2e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 58 agggagttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttg 117
||||| || ||||| ||||| |||||||| ||||| || || |||||||| | ||| ||
Sbjct: 1698 agggaattaacgtcttggttatgctgctctgcgctttggacatggttggtcacgggatta 1639
Query: 118 cccaggtactggagctcggagcagtaggacgccatggc 155
||||| |||| ||||||||||| || || ||||||||
Sbjct: 1638 gccaggaactgaagctcggagcaataagaagccatggc 1601
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 52.0 bits (26), Expect = 2e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 58 agggagttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttg 117
||||| || ||||| ||||| |||||||| ||||| || || |||||||| | ||| ||
Sbjct: 3207141 agggaattaacgtcttggttatgctgctctgcgctttggacatggttggtcacgggatta 3207082
Query: 118 cccaggtactggagctcggagcagtaggacgccatggc 155
||||| |||| ||||||||||| || || ||||||||
Sbjct: 3207081 gccaggaactgaagctcggagcaataagaagccatggc 3207044
Score = 48.1 bits (24), Expect = 0.004
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 726 atgactgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaaga 785
|||| ||||| ||||| || || ||||| |||||||| ||||| ||| || ||||||||
Sbjct: 16921000 atgaatgccgttacgccatttacgattttgactttgtaactgctgagaattgccagaaga 16920941
Query: 786 gcaggatcttct 797
||| ||||||||
Sbjct: 16920940 gcaagatcttct 16920929
Score = 42.1 bits (21), Expect = 0.23
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 749 gatttcgactttgttactgcagaggatgtccagaagagcaggatcttct 797
|||||||||||||| ||||| ||| | ||||||||||| ||||||||
Sbjct: 16919018 gatttcgactttgtcactgcggagaactgccagaagagcaagatcttct 16918970
>gb|BP861023.1|BP861023 BP861023 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-46-A22 5',
mRNA sequence
Length = 362
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 731 tgccgatacgcgatctatgatttcgactttgttactg 767
||||||||||| || ||||||||||||||||| ||||
Sbjct: 326 tgccgatacgccatttatgatttcgactttgtcactg 362
>emb|AL769391.1| Arabidopsis thaliana T-DNA flanking sequence GK-085G10-011847,
genomic survey sequence
Length = 102
Score = 48.1 bits (24), Expect = 0.004
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 726 atgactgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaaga 785
|||| ||||| ||||| || || ||||| |||||||| ||||| ||| || ||||||||
Sbjct: 86 atgaatgccgttacgccatttacgattttgactttgtaactgctgagaattgccagaaga 27
Query: 786 gcaggatcttct 797
||| ||||||||
Sbjct: 26 gcaagatcttct 15
>gb|AA042232.1|AA042232 24553 CD4-13 Arabidopsis thaliana cDNA clone E4G1T7, mRNA sequence
Length = 555
Score = 48.1 bits (24), Expect = 0.004
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 726 atgactgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaaga 785
|||| ||||| ||||| || || ||||| |||||||| ||||| ||| || ||||||||
Sbjct: 267 atgaatgccgttacgccatttacgattttgactttgtaactgctgagaattgccagaaga 326
Query: 786 gcaggatcttct 797
||| ||||||||
Sbjct: 327 gcaagatcttct 338
>gb|T04216.1|T04216 263 Lambda-PRL2 Arabidopsis thaliana cDNA clone 33D1T7, mRNA
sequence
Length = 400
Score = 48.1 bits (24), Expect = 0.004
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 726 atgactgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaaga 785
|||| ||||| ||||| || || ||||| |||||||| ||||| ||| || ||||||||
Sbjct: 310 atgaatgccgttacgccatttacgattttgactttgtcactgctgagaattgccagaaga 369
Query: 786 gcaggatcttct 797
||| ||||||||
Sbjct: 370 gcaagatcttct 381
>gb|AV782149.1|AV782149 AV782149 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-14-K04 3',
mRNA sequence
Length = 709
Score = 48.1 bits (24), Expect = 0.004
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 726 atgactgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaaga 785
|||| ||||| ||||| || || ||||| |||||||| ||||| ||| || ||||||||
Sbjct: 470 atgaatgccgttacgccatttacgattttgactttgtaactgctgagaattgccagaaga 411
Query: 786 gcaggatcttct 797
||| ||||||||
Sbjct: 410 gcaagatcttct 399
>gb|AV821637.1|AV821637 AV821637 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-14-K04 5',
mRNA sequence
Length = 685
Score = 48.1 bits (24), Expect = 0.004
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 726 atgactgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaaga 785
|||| ||||| ||||| || || ||||| |||||||| ||||| ||| || ||||||||
Sbjct: 327 atgaatgccgttacgccatttacgattttgactttgtaactgctgagaattgccagaaga 386
Query: 786 gcaggatcttct 797
||| ||||||||
Sbjct: 387 gcaagatcttct 398
>gb|AV828617.1|AV828617 AV828617 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-30-M07 5',
mRNA sequence
Length = 544
Score = 48.1 bits (24), Expect = 0.004
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 726 atgactgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaaga 785
|||| ||||| ||||| || || ||||| |||||||| ||||| ||| || ||||||||
Sbjct: 325 atgaatgccgttacgccatttacgattttgactttgtaactgctgagaattgccagaaga 384
Query: 786 gcaggatcttct 797
||| ||||||||
Sbjct: 385 gcaagatcttct 396
>gb|U48938.1|ATU48938 Arabidopsis thaliana actin depolymerizing factor 1 (AtADF1) mRNA,
complete cds
Length = 670
Score = 48.1 bits (24), Expect = 0.004
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 726 atgactgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaaga 785
|||| ||||| ||||| || || ||||| |||||||| ||||| ||| || ||||||||
Sbjct: 310 atgaatgccgttacgccatttacgattttgactttgtcactgctgagaattgccagaaga 369
Query: 786 gcaggatcttct 797
||| ||||||||
Sbjct: 370 gcaagatcttct 381
>gb|AF102173.1|AF102173 Arabidopsis thaliana actin depolymerizing factor 1 (ADF1) gene,
complete cds
Length = 5543
Score = 48.1 bits (24), Expect = 0.004
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 726 atgactgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaaga 785
|||| ||||| ||||| || || ||||| |||||||| ||||| ||| || ||||||||
Sbjct: 4694 atgaatgccgttacgccatttacgattttgactttgtaactgctgagaattgccagaaga 4753
Query: 786 gcaggatcttct 797
||| ||||||||
Sbjct: 4754 gcaagatcttct 4765
>gb|AY035154.1| Arabidopsis thaliana putative actin depolymerizing factor ADF1
(At3g46010) mRNA, complete cds
Length = 811
Score = 48.1 bits (24), Expect = 0.004
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 726 atgactgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaaga 785
|||| ||||| ||||| || || ||||| |||||||| ||||| ||| || ||||||||
Sbjct: 326 atgaatgccgttacgccatttacgattttgactttgtaactgctgagaattgccagaaga 385
Query: 786 gcaggatcttct 797
||| ||||||||
Sbjct: 386 gcaagatcttct 397
>gb|AY062940.1| Arabidopsis thaliana putative actin depolymerizing factor 1
(At3g46010) mRNA, complete cds
Length = 451
Score = 48.1 bits (24), Expect = 0.004
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 726 atgactgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaaga 785
|||| ||||| ||||| || || ||||| |||||||| ||||| ||| || ||||||||
Sbjct: 188 atgaatgccgttacgccatttacgattttgactttgtaactgctgagaattgccagaaga 247
Query: 786 gcaggatcttct 797
||| ||||||||
Sbjct: 248 gcaagatcttct 259
>gb|AY085853.1| Arabidopsis thaliana clone 1907 mRNA, complete sequence
Length = 831
Score = 48.1 bits (24), Expect = 0.004
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 726 atgactgccgatacgcgatctatgatttcgactttgttactgcagaggatgtccagaaga 785
|||| ||||| ||||| || || ||||| |||||||| ||||| ||| || ||||||||
Sbjct: 326 atgaatgccgttacgccatttacgattttgactttgtcactgctgagaattgccagaaga 385
Query: 786 gcaggatcttct 797
||| ||||||||
Sbjct: 386 gcaagatcttct 397
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 381,871
Number of Sequences: 1013581
Number of extensions: 381871
Number of successful extensions: 26058
Number of sequences better than 0.5: 86
Number of HSP's better than 0.5 without gapping: 87
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25220
Number of HSP's gapped (non-prelim): 838
length of query: 1252
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1232
effective length of database: 888,669,252
effective search space: 1094840518464
effective search space used: 1094840518464
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)