BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131584.2.4
(739 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV533116.1|AV533116 AV533116 Arabidopsis thaliana flower... 90 6e-016
gb|CB254025.1|CB254025 80-E015391-019-006-O19-T7R MPIZ-ADIS... 90 6e-016
gb|AY087177.1| Arabidopsis thaliana clone 32457 mRNA, compl... 90 6e-016
ref|NM_116149.2| Arabidopsis thaliana unknown protein AT3G6... 90 6e-016
gb|BP866835.1|BP866835 BP866835 RAFL21 Arabidopsis thaliana... 84 4e-014
gb|AV818857.1|AV818857 AV818857 RAFL11 Arabidopsis thaliana... 82 2e-013
gb|AV832022.1|AV832022 AV832022 RAFL11 Arabidopsis thaliana... 82 2e-013
gb|CB264605.1|CB264605 49-E014658-035-002-A13-T7R MPIZ-ADIS... 82 2e-013
gb|AY042797.1| Arabidopsis thaliana small nuclear ribonucle... 82 2e-013
gb|AV819279.1|AV819279 AV819279 RAFL11 Arabidopsis thaliana... 80 6e-013
gb|BP613407.1|BP613407 BP613407 RAFL16 Arabidopsis thaliana... 76 1e-011
gb|BP864880.1|BP864880 BP864880 RAFL21 Arabidopsis thaliana... 76 1e-011
gb|BP815339.1|BP815339 BP815339 RAFL19 Arabidopsis thaliana... 74 4e-011
gb|BP831765.1|BP831765 BP831765 RAFL19 Arabidopsis thaliana... 74 4e-011
gb|BP854615.1|BP854615 BP854615 RAFL21 Arabidopsis thaliana... 74 4e-011
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 74 4e-011
emb|AL162651.1|ATF26K9 Arabidopsis thaliana DNA chromosome ... 74 4e-011
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 74 4e-011
gb|BP581041.1|BP581041 BP581041 RAFL14 Arabidopsis thaliana... 70 6e-010
gb|H36625.1|H36625 14293 Lambda-PRL2 Arabidopsis thaliana c... 68 2e-009
gb|BP864529.1|BP864529 BP864529 RAFL21 Arabidopsis thaliana... 68 2e-009
gb|BP858325.1|BP858325 BP858325 RAFL21 Arabidopsis thaliana... 64 4e-008
gb|BP868432.1|BP868432 BP868432 RAFL21 Arabidopsis thaliana... 64 4e-008
gb|BP850718.1|BP850718 BP850718 RAFL21 Arabidopsis thaliana... 62 1e-007
gb|AI999102.1|AI999102 701554462 A. thaliana, Columbia Col-... 58 2e-006
gb|AV820625.1|AV820625 AV820625 RAFL11 Arabidopsis thaliana... 54 4e-005
gb|AV535104.1|AV535104 AV535104 Arabidopsis thaliana flower... 50 5e-004
gb|BP597520.1|BP597520 BP597520 RAFL15 Arabidopsis thaliana... 50 5e-004
gb|BP636278.1|BP636278 BP636278 RAFL18 Arabidopsis thaliana... 50 5e-004
gb|BP650469.1|BP650469 BP650469 RAFL19 Arabidopsis thaliana... 50 5e-004
gb|BP670363.1|BP670363 BP670363 RAFL21 Arabidopsis thaliana... 50 5e-004
gb|BP788381.1|BP788381 BP788381 RAFL7 Arabidopsis thaliana ... 50 5e-004
gb|F20137.1|F20137 ATTS6176 AC16H Arabidopsis thaliana cDNA... 48 0.002
gb|BP621376.1|BP621376 BP621376 RAFL16 Arabidopsis thaliana... 44 0.034
gb|BP645975.1|BP645975 BP645975 RAFL19 Arabidopsis thaliana... 44 0.034
gb|BP869127.1|BP869127 BP869127 RAFL21 Arabidopsis thaliana... 44 0.034
gb|AI998209.1|AI998209 701515770 A. thaliana, Columbia Col-... 42 0.13
gb|AU226468.1|AU226468 AU226468 RAFL14 Arabidopsis thaliana... 42 0.13
gb|CK118493.1|CK118493 216o12.p1 AtM1 Arabidopsis thaliana ... 42 0.13
gb|BP571612.1|BP571612 BP571612 RAFL14 Arabidopsis thaliana... 42 0.13
gb|BP562727.2|BP562727 BP562727 RAFL14 Arabidopsis thaliana... 42 0.13
gb|BP808679.1|BP808679 BP808679 RAFL16 Arabidopsis thaliana... 42 0.13
gb|BP851888.1|BP851888 BP851888 RAFL21 Arabidopsis thaliana... 42 0.13
gb|BT004783.1| Arabidopsis thaliana At2g47640 gene, complet... 42 0.13
gb|AY086601.1| Arabidopsis thaliana clone 26123 mRNA, compl... 42 0.13
emb|BX821379.1|CNS0AA65 Arabidopsis thaliana Full-length cD... 42 0.13
ref|NM_130332.2| Arabidopsis thaliana unknown protein AT2G4... 42 0.13
ref|NM_180146.3| Arabidopsis thaliana unknown protein AT2G4... 42 0.13
ref|NM_201981.2| Arabidopsis thaliana unknown protein AT2G4... 42 0.13
>gb|AV533116.1|AV533116 AV533116 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB056b01F 3', mRNA sequence
Length = 591
Score = 89.7 bits (45), Expect = 6e-016
Identities = 198/249 (79%)
Strand = Plus / Minus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||||||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 443 atgatgagtgttaagaataacactcaggtgttgatcaattgccgtaacaacaggaaactc 384
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgag 366
|||||||| ||| | |||||||| | ||||| |||||||| || || || || | ||
Sbjct: 383 cttggccgagttagggcttttgacaggcactgcaacatggttcttgaaaatgtcagagaa 324
Query: 367 atgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaag 426
|||||||| ||| | || || || || || || || ||||| ||||| ||||| ||||
Sbjct: 323 atgtggactgaggttccgaaaaccggaaaaggaaagaagaaagctcttcctgttaacaga 264
Query: 427 gatagattcatcagtaagatgttcctcaggggcgactcggtcatcatagtgctgaggaac 486
||| |||||||||| ||||||||||| | || ||||| ||||| || || || ||||||
Sbjct: 263 gatcgattcatcagcaagatgttcctgcgtggagactcagtcattatcgtcctcaggaac 204
Query: 487 ccgaagtga 495
|| ||||||
Sbjct: 203 cccaagtga 195
>gb|CB254025.1|CB254025 80-E015391-019-006-O19-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768O196Q 5-PRIME, mRNA sequence
Length = 535
Score = 89.7 bits (45), Expect = 6e-016
Identities = 198/249 (79%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||||||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 157 atgatgagtgttaagaataacactcaggtgttgatcaattgccgtaacaacaggaaactc 216
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgag 366
|||||||| ||| | |||||||| | ||||| |||||||| || || || || | ||
Sbjct: 217 cttggccgagttagggcttttgacaggcactgcaacatggttcttgaaaatgtcagagaa 276
Query: 367 atgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaag 426
|||||||| ||| | || || || || || || || ||||| ||||| ||||| ||||
Sbjct: 277 atgtggactgaggttccgaaaaccggaaaaggaaagaagaaagctcttcctgttaacaga 336
Query: 427 gatagattcatcagtaagatgttcctcaggggcgactcggtcatcatagtgctgaggaac 486
||| |||||||||| ||||||||||| | || ||||| ||||| || || || ||||||
Sbjct: 337 gatcgattcatcagcaagatgttcctgcgtggagactcagtcattatcgtcctcaggaac 396
Query: 487 ccgaagtga 495
|| ||||||
Sbjct: 397 cccaagtga 405
>gb|AY087177.1| Arabidopsis thaliana clone 32457 mRNA, complete sequence
Length = 646
Score = 89.7 bits (45), Expect = 6e-016
Identities = 198/249 (79%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||||||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 202 atgatgagtgttaagaataacactcaggtgttgatcaattgccgtaacaacaggaaactc 261
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgag 366
|||||||| ||| | |||||||| | ||||| |||||||| || || || || | ||
Sbjct: 262 cttggccgagttagggcttttgacaggcactgcaacatggttcttgaaaatgtcagagaa 321
Query: 367 atgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaag 426
|||||||| ||| | || || || || || || || ||||| ||||| ||||| ||||
Sbjct: 322 atgtggactgaggttccgaaaaccggaaaaggaaagaagaaagctcttcctgttaacaga 381
Query: 427 gatagattcatcagtaagatgttcctcaggggcgactcggtcatcatagtgctgaggaac 486
||| |||||||||| ||||||||||| | || ||||| ||||| || || || ||||||
Sbjct: 382 gatcgattcatcagcaagatgttcctgcgtggagactcagtcattatcgtcctcaggaac 441
Query: 487 ccgaagtga 495
|| ||||||
Sbjct: 442 cccaagtga 450
>ref|NM_116149.2| Arabidopsis thaliana unknown protein AT3G62840 mRNA, complete cds
Length = 1063
Score = 89.7 bits (45), Expect = 6e-016
Identities = 198/249 (79%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||||||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 199 atgatgagtgttaagaataacactcaggtgttgatcaattgccgtaacaacaggaaactc 258
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgag 366
|||||||| ||| | |||||||| | ||||| |||||||| || || || || | ||
Sbjct: 259 cttggccgagttagggcttttgacaggcactgcaacatggttcttgaaaatgtcagagaa 318
Query: 367 atgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaag 426
|||||||| ||| | || || || || || || || ||||| ||||| ||||| ||||
Sbjct: 319 atgtggactgaggttccgaaaaccggaaaaggaaagaagaaagctcttcctgttaacaga 378
Query: 427 gatagattcatcagtaagatgttcctcaggggcgactcggtcatcatagtgctgaggaac 486
||| |||||||||| ||||||||||| | || ||||| ||||| || || || ||||||
Sbjct: 379 gatcgattcatcagcaagatgttcctgcgtggagactcagtcattatcgtcctcaggaac 438
Query: 487 ccgaagtga 495
|| ||||||
Sbjct: 439 cccaagtga 447
>gb|BP866835.1|BP866835 BP866835 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-79-B01 5',
mRNA sequence
Length = 381
Score = 83.8 bits (42), Expect = 4e-014
Identities = 165/206 (80%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||||||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 170 atgatgagtgttaagaataacactcaggtgttgatcaattgccgtaacaacaggaaactc 229
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgag 366
|||||||| ||| | |||||||| | ||||| |||||||| || || || || | ||
Sbjct: 230 cttggccgagttagggcttttgacaggcactgcaacatggttcttgaaaatgtcagagaa 289
Query: 367 atgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaag 426
|||||||| ||| | || || || || || || || ||||| ||||| ||||| ||||
Sbjct: 290 atgtggactgaggttccgaaaaccggaaaaggaaagaagaaagctcttcctgttaacaga 349
Query: 427 gatagattcatcagtaagatgttcct 452
||| |||||||||| |||||||||||
Sbjct: 350 gatcgattcatcagcaagatgttcct 375
>gb|AV818857.1|AV818857 AV818857 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-01-A19 3',
mRNA sequence
Length = 412
Score = 81.8 bits (41), Expect = 2e-013
Identities = 198/249 (79%), Gaps = 1/249 (0%)
Strand = Plus / Minus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||||||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 360 atgatgagtgttaagaataacactcaggtgttgatcaattgccgtaacaacaggaaactc 301
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgag 366
|||||||| ||| | |||||||| | ||||| |||||||| || || || || | ||
Sbjct: 300 cttggccgagttag-gcttttgacaggcactgcaacatggttcttgaaaatgtcagagaa 242
Query: 367 atgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaag 426
|||||||| ||| | || || || || || || || ||||| ||||| ||||| ||||
Sbjct: 241 atgtggactgaggttccgaaaaccggaaaaggaaagaagaaagctcttcctgttaacaga 182
Query: 427 gatagattcatcagtaagatgttcctcaggggcgactcggtcatcatagtgctgaggaac 486
||| |||||||||| ||||||||||| | || ||||| ||||| || || || ||||||
Sbjct: 181 gatcgattcatcagcaagatgttcctgcgtggagactcagtcattatcgtcctcaggaac 122
Query: 487 ccgaagtga 495
|| ||||||
Sbjct: 121 cccaagtga 113
>gb|AV832022.1|AV832022 AV832022 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-01-A19 5',
mRNA sequence
Length = 547
Score = 81.8 bits (41), Expect = 2e-013
Identities = 198/249 (79%), Gaps = 1/249 (0%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||||||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 180 atgatgagtgttaagaataacactcaggtgttgatcaattgccgtaacaacaggaaactc 239
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgag 366
|||||||| ||| | |||||||| | ||||| |||||||| || || || || | ||
Sbjct: 240 cttggccgagttag-gcttttgacaggcactgcaacatggttcttgaaaatgtcagagaa 298
Query: 367 atgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaag 426
|||||||| ||| | || || || || || || || ||||| ||||| ||||| ||||
Sbjct: 299 atgtggactgaggttccgaaaaccggaaaaggaaagaagaaagctcttcctgttaacaga 358
Query: 427 gatagattcatcagtaagatgttcctcaggggcgactcggtcatcatagtgctgaggaac 486
||| |||||||||| ||||||||||| | || ||||| ||||| || || || ||||||
Sbjct: 359 gatcgattcatcagcaagatgttcctgcgtggagactcagtcattatcgtcctcaggaac 418
Query: 487 ccgaagtga 495
|| ||||||
Sbjct: 419 cccaagtga 427
>gb|CB264605.1|CB264605 49-E014658-035-002-A13-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA
clone MPIZp2000A132Q 5-PRIME, mRNA sequence
Length = 560
Score = 81.8 bits (41), Expect = 2e-013
Identities = 197/249 (79%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||||||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 165 atgatgagtgttaagaataacactcaggtgttgatcaattgccgtaacaacaggaaactc 224
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgag 366
|||||||| ||| | |||||||| | ||||| |||||||| || || || || ||
Sbjct: 225 cttggccgagttagggcttttgacaggcactgcaacatggttcttgaaaatgtcatagaa 284
Query: 367 atgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaag 426
|||||||| ||| | || || || || || || || ||||| ||||| ||||| ||||
Sbjct: 285 atgtggactgaggttccgaaaaccggaaaaggaaagaagaaagctcttcctgttaacaga 344
Query: 427 gatagattcatcagtaagatgttcctcaggggcgactcggtcatcatagtgctgaggaac 486
||| |||||||||| ||||||||||| | || ||||| ||||| || || || ||||||
Sbjct: 345 gatcgattcatcagcaagatgttcctgcgtggagactcagtcattatcgtcctcaggaac 404
Query: 487 ccgaagtga 495
|| ||||||
Sbjct: 405 cccaagtga 413
>gb|AY042797.1| Arabidopsis thaliana small nuclear ribonucleoprotein-like protein
(F26K9.270) mRNA, complete cds
Length = 541
Score = 81.8 bits (41), Expect = 2e-013
Identities = 198/249 (79%), Gaps = 1/249 (0%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||||||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 182 atgatgagtgttaagaataacactcaggtgttgatcaattgccgtaacaacaggaaactc 241
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgag 366
|||||||| ||| | |||||||| | ||||| |||||||| || || || || | ||
Sbjct: 242 cttggccgagttag-gcttttgacaggcactgcaacatggttcttgaaaatgtcagagaa 300
Query: 367 atgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaag 426
|||||||| ||| | || || || || || || || ||||| ||||| ||||| ||||
Sbjct: 301 atgtggactgaggttccgaaaaccggaaaaggaaagaagaaagctcttcctgttaacaga 360
Query: 427 gatagattcatcagtaagatgttcctcaggggcgactcggtcatcatagtgctgaggaac 486
||| |||||||||| ||||||||||| | || ||||| ||||| || || || ||||||
Sbjct: 361 gatcgattcatcagcaagatgttcctgcgtggagactcagtcattatcgtcctcaggaac 420
Query: 487 ccgaagtga 495
|| ||||||
Sbjct: 421 cccaagtga 429
>gb|AV819279.1|AV819279 AV819279 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-03-H06 3',
mRNA sequence
Length = 435
Score = 79.8 bits (40), Expect = 6e-013
Identities = 193/244 (79%)
Strand = Plus / Minus
Query: 252 gagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttgg 311
|||||||||||| ||||| ||||| | ||||||||||| ||||||| ||| || |||||
Sbjct: 435 gagtgttaagaataacactcaggtgttgatcaattgccgtaacaacaggaaactccttgg 376
Query: 312 ccgtgttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtg 371
||| ||| | |||||||| | ||||| |||||||| || || || || | || |||||
Sbjct: 375 ccgagttagggcttttgacaggcactgcaacatggttcttgaaaatgtcagagaaatgtg 316
Query: 372 gacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatag 431
||| ||| | || || || || || || || ||||| ||||| ||||| |||| ||| |
Sbjct: 315 gactgaggttccgaaaaccggaaaaggaaagaagaaagctcttcctgttaacagagatcg 256
Query: 432 attcatcagtaagatgttcctcaggggcgactcggtcatcatagtgctgaggaacccgaa 491
||||||||| ||||||||||| | || ||||| ||||| || || || |||||||| ||
Sbjct: 255 attcatcagcaagatgttcctgcgtggagactcagtcattatcgtcctcaggaaccccaa 196
Query: 492 gtga 495
||||
Sbjct: 195 gtga 192
>gb|BP613407.1|BP613407 BP613407 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-93-A15 3',
mRNA sequence
Length = 514
Score = 75.8 bits (38), Expect = 1e-011
Identities = 198/250 (79%), Gaps = 1/250 (0%)
Strand = Plus / Minus
Query: 247 atgatgagtgttaagaacaacacccaggtcctc-atcaattgccgcaacaacaagaagct 305
||||||||||||||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 441 atgatgagtgttaagaataacactcaggtggttgatcaattgccgtaacaacaggaaact 382
Query: 306 gcttggccgtgttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtga 365
|||||||| ||| | |||||||| | ||||| |||||||| || || || || | ||
Sbjct: 381 ccttggccgagttagggcttttgacaggcactgcaacatggttcttgaaaatgtcagaga 322
Query: 366 gatgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaa 425
|||||||| ||| | || || || || || || || ||||| ||||| ||||| ||||
Sbjct: 321 aatgtggactgaggttccgaaaaccggaaaaggaaagaagaaagctcttcctgttaacag 262
Query: 426 ggatagattcatcagtaagatgttcctcaggggcgactcggtcatcatagtgctgaggaa 485
||| |||||||||| ||||||||||| | || ||||| ||||| || || || |||||
Sbjct: 261 agatcgattcatcagcaagatgttcctgcgtggagactcagtcattatcgtcctcaggaa 202
Query: 486 cccgaagtga 495
||| ||||||
Sbjct: 201 ccccaagtga 192
>gb|BP864880.1|BP864880 BP864880 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-72-C14 5',
mRNA sequence
Length = 390
Score = 75.8 bits (38), Expect = 1e-011
Identities = 164/206 (79%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||||||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 174 atgatgagtgttaagaataacactcaggtgttgatcaattgccgtaacaacaggaaactc 233
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgag 366
|||||||| ||| | |||||||| | ||||| |||||||| || || || || | ||
Sbjct: 234 cttggccgagttagggcttttgacaggcactgcaacatggttcttgaaaatgtcagagaa 293
Query: 367 atgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaag 426
|||||||| ||| | || || || || || || || |||| ||||| ||||| ||||
Sbjct: 294 atgtggactgaggttccgaaaaccggaaaaggaaaggagaaagctcttcctgttaacaga 353
Query: 427 gatagattcatcagtaagatgttcct 452
||| |||||||||| |||||||||||
Sbjct: 354 gatcgattcatcagcaagatgttcct 379
>gb|BP815339.1|BP815339 BP815339 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-38-I16 5',
mRNA sequence
Length = 391
Score = 73.8 bits (37), Expect = 4e-011
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||||||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 171 atgatgagtgttaagaataacactcaggtgttgatcaattgccgtaacaacaggaaactc 230
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggt 347
|||||||| ||| | |||||||| | ||||| ||||||||
Sbjct: 231 cttggccgagttagggcttttgacaggcactgcaacatggt 271
>gb|BP831765.1|BP831765 BP831765 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-90-C10 5',
mRNA sequence
Length = 364
Score = 73.8 bits (37), Expect = 4e-011
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||||||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 173 atgatgagtgttaagaataacactcaggtgttgatcaattgccgtaacaacaggaaactc 232
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggt 347
|||||||| ||| | |||||||| | ||||| ||||||||
Sbjct: 233 cttggccgagttagggcttttgacaggcactgcaacatggt 273
>gb|BP854615.1|BP854615 BP854615 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-23-N20 5',
mRNA sequence
Length = 371
Score = 73.8 bits (37), Expect = 4e-011
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||||||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 196 atgatgagtgttaagaataacactcaggtgttgatcaattgccgtaacaacaggaaactc 255
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggt 347
|||||||| ||| | |||||||| | ||||| ||||||||
Sbjct: 256 cttggccgagttagggcttttgacaggcactgcaacatggt 296
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 73.8 bits (37), Expect = 4e-011
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||||||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 23179294 atgatgagtgttaagaataacactcaggtgttgatcaattgccgtaacaacaggaaactc 23179235
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggt 347
|||||||| ||| | |||||||| | ||||| ||||||||
Sbjct: 23179234 cttggccgagttagggcttttgacaggcactgcaacatggt 23179194
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 403 aagaaggctctgcctgtgaacaaggatagattcatcagtaagatgttcctcaggggcgac 462
||||| ||||| ||||| |||| ||| |||||||||| ||||||||||| | || |||
Sbjct: 23179050 aagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcctgcgtggagac 23178991
Query: 463 tcggtcatcatagtgctgaggaacccgaagtga 495
|| ||||| || || || |||||||| ||||||
Sbjct: 23178990 tcagtcattatcgtcctcaggaaccccaagtga 23178958
>emb|AL162651.1|ATF26K9 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9
Length = 110257
Score = 73.8 bits (37), Expect = 4e-011
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||||||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 89037 atgatgagtgttaagaataacactcaggtgttgatcaattgccgtaacaacaggaaactc 88978
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggt 347
|||||||| ||| | |||||||| | ||||| ||||||||
Sbjct: 88977 cttggccgagttagggcttttgacaggcactgcaacatggt 88937
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 403 aagaaggctctgcctgtgaacaaggatagattcatcagtaagatgttcctcaggggcgac 462
||||| ||||| ||||| |||| ||| |||||||||| ||||||||||| | || |||
Sbjct: 88793 aagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcctgcgtggagac 88734
Query: 463 tcggtcatcatagtgctgaggaacccgaagtga 495
|| ||||| || || || |||||||| ||||||
Sbjct: 88733 tcagtcattatcgtcctcaggaaccccaagtga 88701
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 73.8 bits (37), Expect = 4e-011
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||||||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 23247038 atgatgagtgttaagaataacactcaggtgttgatcaattgccgtaacaacaggaaactc 23246979
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggt 347
|||||||| ||| | |||||||| | ||||| ||||||||
Sbjct: 23246978 cttggccgagttagggcttttgacaggcactgcaacatggt 23246938
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 403 aagaaggctctgcctgtgaacaaggatagattcatcagtaagatgttcctcaggggcgac 462
||||| ||||| ||||| |||| ||| |||||||||| ||||||||||| | || |||
Sbjct: 23246794 aagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcctgcgtggagac 23246735
Query: 463 tcggtcatcatagtgctgaggaacccgaagtga 495
|| ||||| || || || |||||||| ||||||
Sbjct: 23246734 tcagtcattatcgtcctcaggaaccccaagtga 23246702
>gb|BP581041.1|BP581041 BP581041 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-30-D07 3',
mRNA sequence
Length = 467
Score = 69.9 bits (35), Expect = 6e-010
Identities = 165/207 (79%), Gaps = 1/207 (0%)
Strand = Plus / Minus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||||||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 445 atgatgagtgttaagaataacactcaggtgttgatcaattgccgtaacaacaggaaactc 386
Query: 307 cttggccgtgtt-cgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtga 365
|||||||| ||| | |||||||| | ||||| |||||||| || || || || | ||
Sbjct: 385 cttggccgagttaggggcttttgacaggcactgcaacatggttcttgaaaatgtcagaga 326
Query: 366 gatgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaa 425
|||||||| ||| | || || || || || || || ||||| ||||| ||||| ||||
Sbjct: 325 aatgtggactgaggttccgaaaaccggaaaaggaaagaagaaagctcttcctgttaacag 266
Query: 426 ggatagattcatcagtaagatgttcct 452
||| |||||||||| |||||||||||
Sbjct: 265 agatcgattcatcagcaagatgttcct 239
>gb|H36625.1|H36625 14293 Lambda-PRL2 Arabidopsis thaliana cDNA clone 175N1T7, mRNA
sequence
Length = 450
Score = 67.9 bits (34), Expect = 2e-009
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||||||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 188 atgatgagtgttaagaataacactcaggtgttgatcaattgccgtaacaacaggaaactc 247
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggt 347
|||||||| ||| | |||||| | | ||||| ||||||||
Sbjct: 248 cttggccgagttagggcttttnacaggcactgcaacatggt 288
>gb|BP864529.1|BP864529 BP864529 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-70-I12 5',
mRNA sequence
Length = 390
Score = 67.9 bits (34), Expect = 2e-009
Identities = 164/206 (79%), Gaps = 1/206 (0%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||||||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 169 atgatgagtgttaagaataacactcaggtgttgatcaattgccgtaacaacaggaaactc 228
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgag 366
|||||||| ||| | || ||||| | ||||| |||||||| || || || || | ||
Sbjct: 229 cttggccgagttagggc-tttgacaggcactgcaacatggttcttgaaaatgtcagagaa 287
Query: 367 atgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaag 426
|||||||| ||| | || || || || || || || ||||| ||||| ||||| ||||
Sbjct: 288 atgtggactgaggttccgaaaaccggaaaaggaaagaagaaagctcttcctgttaacaga 347
Query: 427 gatagattcatcagtaagatgttcct 452
||| |||||||||| |||||||||||
Sbjct: 348 gatcgattcatcagcaagatgttcct 373
>gb|BP858325.1|BP858325 BP858325 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-36-N11 5',
mRNA sequence
Length = 398
Score = 63.9 bits (32), Expect = 4e-008
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||||||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 171 atgatgagtgttaagaataacactcaggtgttgatcaattgccgtaacaacaggaaactc 230
Query: 307 cttggccg 314
||||||||
Sbjct: 231 cttggccg 238
>gb|BP868432.1|BP868432 BP868432 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-84-F15 5',
mRNA sequence
Length = 396
Score = 63.9 bits (32), Expect = 4e-008
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||||||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 171 atgatgagtgttaagaataacactcaggtgttgatcaattgccgtaacaacaggaaactc 230
Query: 307 cttggccg 314
||||||||
Sbjct: 231 cttggccg 238
>gb|BP850718.1|BP850718 BP850718 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-14-A12 5',
mRNA sequence
Length = 401
Score = 61.9 bits (31), Expect = 1e-007
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||||||||| ||||| ||||| | ||||||||||| ||||| | ||| ||
Sbjct: 173 atgatgagtgttaagaataacactcaggtgttgatcaattgccgtaacaaaaggaaactc 232
Query: 307 cttggccgtgttcgtgcttttga 329
|||||||| ||| | ||||||||
Sbjct: 233 cttggccgagttagggcttttga 255
>gb|AI999102.1|AI999102 701554462 A. thaliana, Columbia Col-0, rosette-3 Arabidopsis
thaliana cDNA clone 701554462, mRNA sequence
Length = 379
Score = 58.0 bits (29), Expect = 2e-006
Identities = 167/213 (78%)
Strand = Plus / Minus
Query: 283 aattgccgcaacaacaagaagctgcttggccgtgttcgtgcttttgatcgccactgtaac 342
|||||||| ||||||| ||| || |||||||| ||| | |||||||| | ||||| |||
Sbjct: 379 aattgccgtaacaacaggaaactccttggccgagttagggcttttgacaggcactgcaac 320
Query: 343 atggtgctcgagaacgtgcgtgagatgtggacagagatccccaagactggcaagggcaaa 402
||||| || || || || | || |||||||| ||| | || || || || || || ||
Sbjct: 319 atggttcttgaaaatgtcagagaaatgtggactgaggttccgaaaaccggaaaaggaaag 260
Query: 403 aagaaggctctgcctgtgaacaaggatagattcatcagtaagatgttcctcaggggcgac 462
||||| ||||| ||||| |||| ||| |||||||||| ||||||||||| | || |||
Sbjct: 259 aagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcctgcgtggagac 200
Query: 463 tcggtcatcatagtgctgaggaacccgaagtga 495
|| ||||| || || || |||||||| ||||||
Sbjct: 199 tcagtcattatcgtcctcaggaaccccaagtga 167
>gb|AV820625.1|AV820625 AV820625 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-11-H04 3',
mRNA sequence
Length = 404
Score = 54.0 bits (27), Expect = 4e-005
Identities = 198/251 (78%), Gaps = 3/251 (1%)
Strand = Plus / Minus
Query: 247 atgatgagtgttaagaacaacacc-caggtcctcatcaattgccgcaacaacaagaagct 305
||||||||||||||||| |||||| ||||| | ||||||||||| ||| ||| ||| ||
Sbjct: 362 atgatgagtgttaagaataacacctcaggtgttgatcaattgccgtaacgacacgaaact 303
Query: 306 gcttggccgtgttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtga 365
|||||||| ||| | |||||||| | ||||| |||||||| || || || || | ||
Sbjct: 302 ccttggccgagttag-gcttttgacaggcactgcaacatggttcttgaaaatgtcagaga 244
Query: 366 gatgtgga-cagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaaca 424
||||||| | ||| | || || || || || || || ||||| ||||| ||||| ||||
Sbjct: 243 aatgtggagctgaggttccgaaaaccggaaaaggaaagaagaaagctcttcctgttaaca 184
Query: 425 aggatagattcatcagtaagatgttcctcaggggcgactcggtcatcatagtgctgagga 484
||| |||||||||| ||||||||||| | || ||||| ||||| || || || ||||
Sbjct: 183 gagatcgattcatcagcaagatgttcctgcgtggagactcagtcattatcgtcctcagga 124
Query: 485 acccgaagtga 495
|||| ||||||
Sbjct: 123 accccaagtga 113
>gb|AV535104.1|AV535104 AV535104 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB091a12F 3', mRNA sequence
Length = 326
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 403 aagaaggctctgcctgtgaacaaggatagattcatcagtaagatgttcctcaggggcgac 462
||||| ||||| ||||| |||| ||| |||||||||| ||||||||||| | || |||
Sbjct: 287 aagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcctgcgtggagac 228
Query: 463 tcggtcatcatagtgctgaggaacccgaagtga 495
|| ||||| || || || |||||||| ||||||
Sbjct: 227 tcagtcattatcgtcctcaggaaccccaagtga 195
>gb|BP597520.1|BP597520 BP597520 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-39-O12 3',
mRNA sequence
Length = 435
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 403 aagaaggctctgcctgtgaacaaggatagattcatcagtaagatgttcctcaggggcgac 462
||||| ||||| ||||| |||| ||| |||||||||| ||||||||||| | || |||
Sbjct: 287 aagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcctgcgtggagac 228
Query: 463 tcggtcatcatagtgctgaggaacccgaagtga 495
|| ||||| || || || |||||||| ||||||
Sbjct: 227 tcagtcattatcgtcctcaggaaccccaagtga 195
>gb|BP636278.1|BP636278 BP636278 RAFL18 Arabidopsis thaliana cDNA clone RAFL18-03-P22 3',
mRNA sequence
Length = 469
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 403 aagaaggctctgcctgtgaacaaggatagattcatcagtaagatgttcctcaggggcgac 462
||||| ||||| ||||| |||| ||| |||||||||| ||||||||||| | || |||
Sbjct: 332 aagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcctgcgtggagac 273
Query: 463 tcggtcatcatagtgctgaggaacccgaagtga 495
|| ||||| || || || |||||||| ||||||
Sbjct: 272 tcagtcattatcgtcctcaggaaccccaagtga 240
>gb|BP650469.1|BP650469 BP650469 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-84-H22 3',
mRNA sequence
Length = 410
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 403 aagaaggctctgcctgtgaacaaggatagattcatcagtaagatgttcctcaggggcgac 462
||||| ||||| ||||| |||| ||| |||||||||| ||||||||||| | || |||
Sbjct: 286 aagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcctgcgtggagac 227
Query: 463 tcggtcatcatagtgctgaggaacccgaagtga 495
|| ||||| || || || |||||||| ||||||
Sbjct: 226 tcagtcattatcgtcctcaggaaccccaagtga 194
>gb|BP670363.1|BP670363 BP670363 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-34-M09 3',
mRNA sequence
Length = 419
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 403 aagaaggctctgcctgtgaacaaggatagattcatcagtaagatgttcctcaggggcgac 462
||||| ||||| ||||| |||| ||| |||||||||| ||||||||||| | || |||
Sbjct: 283 aagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcctgcgtggagac 224
Query: 463 tcggtcatcatagtgctgaggaacccgaagtga 495
|| ||||| || || || |||||||| ||||||
Sbjct: 223 tcagtcattatcgtcctcaggaaccccaagtga 191
>gb|BP788381.1|BP788381 BP788381 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-33-J03 3',
mRNA sequence
Length = 403
Score = 50.1 bits (25), Expect = 5e-004
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 403 aagaaggctctgcctgtgaacaaggatagattcatcagtaagatgttcctcaggggcgac 462
||||| ||||| ||||| |||| ||| |||||||||| ||||||||||| | || |||
Sbjct: 287 aagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcctgcgtggagac 228
Query: 463 tcggtcatcatagtgctgaggaacccgaagtga 495
|| ||||| || || || |||||||| ||||||
Sbjct: 227 tcagtcattatcgtcctcaggaaccccaagtga 195
>gb|F20137.1|F20137 ATTS6176 AC16H Arabidopsis thaliana cDNA clone TAP0004 similar to
Homo sapiens., mRNA sequence
Length = 574
Score = 48.1 bits (24), Expect = 0.002
Identities = 174/224 (77%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
|||||||| || ||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 170 atgatgagcgtcaagaataacactcaggttttaatcaattgccggaacaacaggaaactt 229
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgag 366
|||||||| || | || ||||| | ||||| |||||||| || || || || | |||
Sbjct: 230 cttggccgagtgagggcgtttgacagacactgcaacatggttcttgaaaatgtcagagag 289
Query: 367 atgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaag 426
|||||||| ||| | || || ||||| || ||||| ||||| || || || |||||||
Sbjct: 290 atgtggactgaggttccgaaaactgggaaaggcaagaagaaagcacttccggtgaacaga 349
Query: 427 gatagattcatcagtaagatgttcctcaggggcgactcggtcat 470
||| | ||||| || |||||||| || | || |||||||||||
Sbjct: 350 gatcggttcataagcaagatgtttctacgtggagactcggtcat 393
>gb|BP621376.1|BP621376 BP621376 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-41-B20 3',
mRNA sequence
Length = 426
Score = 44.1 bits (22), Expect = 0.034
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 403 aagaaggctctgcctgtgaacaaggatagattcatcagtaagatgttcct 452
||||| ||||| ||||| |||| ||| |||||||||| |||||||||||
Sbjct: 283 aagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcct 234
>gb|BP645975.1|BP645975 BP645975 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-70-J05 3',
mRNA sequence
Length = 393
Score = 44.1 bits (22), Expect = 0.034
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 403 aagaaggctctgcctgtgaacaaggatagattcatcagtaagatgttcct 452
||||| ||||| ||||| |||| ||| |||||||||| |||||||||||
Sbjct: 289 aagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcct 240
>gb|BP869127.1|BP869127 BP869127 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-86-N16 5',
mRNA sequence
Length = 361
Score = 44.1 bits (22), Expect = 0.034
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaa 296
||||||||||||||||| ||||| ||||| | |||||| |||| |||||
Sbjct: 166 atgatgagtgttaagaataacactcaggtgttgatcaatggccgtaacaa 215
>gb|AI998209.1|AI998209 701515770 A. thaliana, Columbia Col-0, rosette-2 Arabidopsis
thaliana cDNA clone 701515770, mRNA sequence
Length = 515
Score = 42.1 bits (21), Expect = 0.13
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
|||||||| || ||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 374 atgatgagcgtcaagaataacactcaggttttaatcaattgccggaacaacaggaaactt 315
Query: 307 cttgg 311
|||||
Sbjct: 314 cttgg 310
>gb|AU226468.1|AU226468 AU226468 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-35-O15 3',
mRNA sequence
Length = 425
Score = 42.1 bits (21), Expect = 0.13
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
|||||||| || ||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 409 atgatgagcgtcaagaataacactcaggttttaatcaattgccggaacaacaggaaactt 350
Query: 307 cttgg 311
|||||
Sbjct: 349 cttgg 345
>gb|CK118493.1|CK118493 216o12.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011O12216
5-PRIME, mRNA sequence
Length = 582
Score = 42.1 bits (21), Expect = 0.13
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
|||||||| || ||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 182 atgatgagcgtcaagaataacactcaggttttaatcaattgccggaacaacaggaaactt 241
Query: 307 cttgg 311
|||||
Sbjct: 242 cttgg 246
>gb|BP571612.1|BP571612 BP571612 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-76-O18 3',
mRNA sequence
Length = 451
Score = 42.1 bits (21), Expect = 0.13
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
|||||||| || ||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 414 atgatgagcgtcaagaataacactcaggttttaatcaattgccggaacaacaggaaactt 355
Query: 307 cttgg 311
|||||
Sbjct: 354 cttgg 350
>gb|BP562727.2|BP562727 BP562727 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-35-O15 5',
mRNA sequence
Length = 491
Score = 42.1 bits (21), Expect = 0.13
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
|||||||| || ||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 176 atgatgagcgtcaagaataacactcaggttttaatcaattgccggaacaacaggaaactt 235
Query: 307 cttgg 311
|||||
Sbjct: 236 cttgg 240
>gb|BP808679.1|BP808679 BP808679 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-18-M06 5',
mRNA sequence
Length = 393
Score = 42.1 bits (21), Expect = 0.13
Identities = 58/69 (84%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacc-caggtcctcatcaattgccgcaacaacaagaagct 305
||||||||||||||||| |||||| ||||| | |||||| |||| ||||| | ||| ||
Sbjct: 197 atgatgagtgttaagaataacacctcaggtgttgatcaatggccgtaacaaaaggaaact 256
Query: 306 gcttggccg 314
||||||||
Sbjct: 257 ccttggccg 265
>gb|BP851888.1|BP851888 BP851888 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-17-N19 5',
mRNA sequence
Length = 388
Score = 42.1 bits (21), Expect = 0.13
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
|||||||| || ||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 194 atgatgagcgtcaagaataacactcaggttttaatcaattgccggaacaacaggaaactt 253
Query: 307 cttgg 311
|||||
Sbjct: 254 cttgg 258
>gb|BT004783.1| Arabidopsis thaliana At2g47640 gene, complete cds
Length = 327
Score = 42.1 bits (21), Expect = 0.13
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
|||||||| || ||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 79 atgatgagcgtcaagaataacactcaggttttaatcaattgccggaacaacaggaaactt 138
Query: 307 cttgg 311
|||||
Sbjct: 139 cttgg 143
>gb|AY086601.1| Arabidopsis thaliana clone 26123 mRNA, complete sequence
Length = 619
Score = 42.1 bits (21), Expect = 0.13
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
|||||||| || ||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 203 atgatgagcgtcaagaataacactcaggttttaatcaattgccggaacaacaggaaactt 262
Query: 307 cttgg 311
|||||
Sbjct: 263 cttgg 267
>emb|BX821379.1|CNS0AA65 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL37ZF02 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 586
Score = 42.1 bits (21), Expect = 0.13
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
|||||||| || ||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 178 atgatgagcgtcaagaataacactcaggttttaatcaattgccggaacaacaggaaactt 237
Query: 307 cttgg 311
|||||
Sbjct: 238 cttgg 242
>ref|NM_130332.2| Arabidopsis thaliana unknown protein AT2G47640 transcript variant
AT2G47640.1 mRNA, complete cds
Length = 624
Score = 42.1 bits (21), Expect = 0.13
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
|||||||| || ||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 208 atgatgagcgtcaagaataacactcaggttttaatcaattgccggaacaacaggaaactt 267
Query: 307 cttgg 311
|||||
Sbjct: 268 cttgg 272
>ref|NM_180146.3| Arabidopsis thaliana unknown protein AT2G47640 transcript variant
AT2G47640.2 mRNA, complete cds
Length = 586
Score = 42.1 bits (21), Expect = 0.13
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
|||||||| || ||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 170 atgatgagcgtcaagaataacactcaggttttaatcaattgccggaacaacaggaaactt 229
Query: 307 cttgg 311
|||||
Sbjct: 230 cttgg 234
>ref|NM_201981.2| Arabidopsis thaliana unknown protein AT2G47640 transcript variant
AT2G47640.3 mRNA, complete cds
Length = 594
Score = 42.1 bits (21), Expect = 0.13
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
|||||||| || ||||| ||||| ||||| | ||||||||||| ||||||| ||| ||
Sbjct: 178 atgatgagcgtcaagaataacactcaggttttaatcaattgccggaacaacaggaaactt 237
Query: 307 cttgg 311
|||||
Sbjct: 238 cttgg 242
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 345,971
Number of Sequences: 1013581
Number of extensions: 345971
Number of successful extensions: 26539
Number of sequences better than 0.5: 49
Number of HSP's better than 0.5 without gapping: 48
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 26281
Number of HSP's gapped (non-prelim): 257
length of query: 739
length of database: 908,940,872
effective HSP length: 20
effective length of query: 719
effective length of database: 888,669,252
effective search space: 638953192188
effective search space used: 638953192188
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)