BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.707
(919 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AA042137.1|AA042137 24474 CD4-13 Arabidopsis thaliana cD... 64 5e-008
gb|AI995261.1|AI995261 701503270 A. thaliana, Ohio State cl... 64 5e-008
gb|AV784363.1|AV784363 AV784363 RAFL5 Arabidopsis thaliana ... 64 5e-008
gb|AV823405.1|AV823405 AV823405 RAFL5 Arabidopsis thaliana ... 64 5e-008
gb|CB265133.1|CB265133 07-E014661-035-002-N02-T7R MPIZ-ADIS... 64 5e-008
gb|CF652487.1|CF652487 58-L020526w-066-003-D16-SP6P MPIZ-AD... 64 5e-008
gb|CK120324.1|CK120324 207m05.p1 AtM1 Arabidopsis thaliana ... 64 5e-008
gb|AY050769.1| Arabidopsis thaliana putative ribosomal prot... 64 5e-008
emb|BX821549.1|CNS0A8EE Arabidopsis thaliana Full-length cD... 64 5e-008
emb|BX820934.1|CNS0A8QP Arabidopsis thaliana Full-length cD... 64 5e-008
ref|NM_127531.2| Arabidopsis thaliana structural constituen... 64 5e-008
ref|NM_001036297.1| Arabidopsis thaliana structural constit... 64 5e-008
gb|BE038429.1|BE038429 AA17D06 AA Arabidopsis thaliana cDNA... 62 2e-007
gb|CF652803.1|CF652803 77-L020578-066-004-I20-SP6P MPIZ-ADI... 62 2e-007
gb|AY079378.1| Arabidopsis thaliana putative ribosomal prot... 62 2e-007
emb|AX506227.1| Sequence 922 from Patent WO0216655 62 2e-007
gb|AV550092.1|AV550092 AV550092 Arabidopsis thaliana roots ... 60 7e-007
gb|AV822896.1|AV822896 AV822896 RAFL5 Arabidopsis thaliana ... 58 3e-006
gb|AV553363.1|AV553363 AV553363 Arabidopsis thaliana roots ... 58 3e-006
gb|AV553570.1|AV553570 AV553570 Arabidopsis thaliana roots ... 58 3e-006
gb|BP814878.1|BP814878 BP814878 RAFL19 Arabidopsis thaliana... 58 3e-006
gb|BP855931.1|BP855931 BP855931 RAFL21 Arabidopsis thaliana... 58 3e-006
gb|AY072328.1| Arabidopsis thaliana putative protein (At4g2... 58 3e-006
gb|BT000047.1| Arabidopsis thaliana putative protein (At4g2... 58 3e-006
gb|AY088304.1| Arabidopsis thaliana clone 5426 mRNA, comple... 58 3e-006
emb|BX828625.1|CNS0A2F6 Arabidopsis thaliana Full-length cD... 58 3e-006
emb|BX829363.1|CNS0A3JN Arabidopsis thaliana Full-length cD... 58 3e-006
ref|NM_119086.3| Arabidopsis thaliana structural constituen... 58 3e-006
gb|T22823.1|T22823 4831 Lambda-PRL2 Arabidopsis thaliana cD... 56 1e-005
gb|CF652479.1|CF652479 58-L020167-066-001-D16-SP6P MPIZ-ADI... 56 1e-005
gb|BP644973.1|BP644973 BP644973 RAFL19 Arabidopsis thaliana... 54 4e-005
gb|BP796967.1|BP796967 BP796967 RAFL14 Arabidopsis thaliana... 52 2e-004
gb|AV819301.1|AV819301 AV819301 RAFL11 Arabidopsis thaliana... 50 7e-004
gb|BP597676.1|BP597676 BP597676 RAFL15 Arabidopsis thaliana... 50 7e-004
gb|BP669895.1|BP669895 BP669895 RAFL21 Arabidopsis thaliana... 50 7e-004
gb|BP865812.1|BP865812 BP865812 RAFL21 Arabidopsis thaliana... 50 7e-004
gb|AC005169.3| Arabidopsis thaliana chromosome 2 clone F6F2... 50 7e-004
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 50 7e-004
gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone poo... 48 0.003
gb|BP842751.1|BP842751 BP842751 RAFL21 Arabidopsis thaliana... 48 0.003
gb|BE529472.1|BE529472 M74D16STM Arabidopsis developing see... 46 0.011
gb|AV783763.1|AV783763 AV783763 RAFL5 Arabidopsis thaliana ... 46 0.011
gb|AV785568.1|AV785568 AV785568 RAFL6 Arabidopsis thaliana ... 46 0.011
gb|AV788181.1|AV788181 AV788181 RAFL6 Arabidopsis thaliana ... 46 0.011
gb|AV801623.1|AV801623 AV801623 RAFL9 Arabidopsis thaliana ... 46 0.011
gb|AV544835.1|AV544835 AV544835 Arabidopsis thaliana roots ... 46 0.011
gb|AV544976.1|AV544976 AV544976 Arabidopsis thaliana roots ... 46 0.011
gb|AV556012.1|AV556012 AV556012 Arabidopsis thaliana green ... 46 0.011
gb|BP633203.1|BP633203 BP633203 RAFL17 Arabidopsis thaliana... 46 0.011
gb|BP650443.1|BP650443 BP650443 RAFL19 Arabidopsis thaliana... 46 0.011
gb|BP795040.1|BP795040 BP795040 RAFL7 Arabidopsis thaliana ... 46 0.011
gb|BP860079.1|BP860079 BP860079 RAFL21 Arabidopsis thaliana... 46 0.011
gb|BP863424.1|BP863424 BP863424 RAFL21 Arabidopsis thaliana... 46 0.011
emb|AL096692.1|F17A13 Arabidopsis thaliana clone F17A13, **... 46 0.011
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 46 0.011
emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosom... 46 0.011
emb|AL161575.2|ATCHRIV71 Arabidopsis thaliana DNA chromosom... 46 0.011
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 46 0.011
gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseud... 42 0.17
gb|AV534292.1|AV534292 AV534292 Arabidopsis thaliana flower... 42 0.17
gb|AV564522.1|AV564522 AV564522 Arabidopsis thaliana green ... 42 0.17
gb|BP564916.1|BP564916 BP564916 RAFL14 Arabidopsis thaliana... 42 0.17
gb|BP566283.1|BP566283 BP566283 RAFL14 Arabidopsis thaliana... 42 0.17
gb|BP647538.1|BP647538 BP647538 RAFL19 Arabidopsis thaliana... 42 0.17
>gb|AA042137.1|AA042137 24474 CD4-13 Arabidopsis thaliana cDNA clone E2H7T7, mRNA sequence
Length = 587
Score = 63.9 bits (32), Expect = 5e-008
Identities = 188/240 (78%)
Strand = Plus / Minus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| |||||| |||| | |||
Sbjct: 262 gttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggcctg 203
Query: 638 gatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagag 697
||| ||||||||||| ||||| || | ||| ||||| ||| | ||||| | |||| |||
Sbjct: 202 gatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgag 143
Query: 698 gttgttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcacaag 757
|||||| | ||||||| |||| || ||||| | || || | |||||||||||||| |
Sbjct: 142 gttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcaccaa 83
Query: 758 gaaggagttgttcttcctcacaacctgccagatcagatcccctggaacggttgccatttc 817
||| ||||||| ||| |||| | || |||||||| | |||||||| || ||||||||
Sbjct: 82 gaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgccatttc 23
>gb|AI995261.1|AI995261 701503270 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701503270, mRNA sequence
Length = 420
Score = 63.9 bits (32), Expect = 5e-008
Identities = 188/240 (78%)
Strand = Plus / Minus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| |||||| |||| | |||
Sbjct: 284 gttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggcctg 225
Query: 638 gatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagag 697
||| ||||||||||| ||||| || | ||| ||||| ||| | ||||| | |||| |||
Sbjct: 224 gatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgag 165
Query: 698 gttgttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcacaag 757
|||||| | ||||||| |||| || ||||| | || || | |||||||||||||| |
Sbjct: 164 gttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcaccaa 105
Query: 758 gaaggagttgttcttcctcacaacctgccagatcagatcccctggaacggttgccatttc 817
||| ||||||| ||| |||| | || |||||||| | |||||||| || ||||||||
Sbjct: 104 gaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgccatttc 45
>gb|AV784363.1|AV784363 AV784363 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-18-M20 3',
mRNA sequence
Length = 648
Score = 63.9 bits (32), Expect = 5e-008
Identities = 188/240 (78%)
Strand = Plus / Plus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| |||||| |||| | |||
Sbjct: 336 gttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggcctg 395
Query: 638 gatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagag 697
||| ||||||||||| ||||| || | ||| ||||| ||| | ||||| | |||| |||
Sbjct: 396 gatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgag 455
Query: 698 gttgttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcacaag 757
|||||| | ||||||| |||| || ||||| | || || | |||||||||||||| |
Sbjct: 456 gttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcaccaa 515
Query: 758 gaaggagttgttcttcctcacaacctgccagatcagatcccctggaacggttgccatttc 817
||| ||||||| ||| |||| | || |||||||| | |||||||| || ||||||||
Sbjct: 516 gaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgccatttc 575
>gb|AV823405.1|AV823405 AV823405 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-18-M20 5',
mRNA sequence
Length = 673
Score = 63.9 bits (32), Expect = 5e-008
Identities = 188/240 (78%)
Strand = Plus / Minus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| |||||| |||| | |||
Sbjct: 297 gttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggcctg 238
Query: 638 gatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagag 697
||| ||||||||||| ||||| || | ||| ||||| ||| | ||||| | |||| |||
Sbjct: 237 gatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgag 178
Query: 698 gttgttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcacaag 757
|||||| | ||||||| |||| || ||||| | || || | |||||||||||||| |
Sbjct: 177 gttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcaccaa 118
Query: 758 gaaggagttgttcttcctcacaacctgccagatcagatcccctggaacggttgccatttc 817
||| ||||||| ||| |||| | || |||||||| | |||||||| || ||||||||
Sbjct: 117 gaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgccatttc 58
>gb|CB265133.1|CB265133 07-E014661-035-002-N02-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA
clone MPIZp2000N022Q 5-PRIME, mRNA sequence
Length = 523
Score = 63.9 bits (32), Expect = 5e-008
Identities = 188/240 (78%)
Strand = Plus / Minus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| |||||| |||| | |||
Sbjct: 291 gttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggcctg 232
Query: 638 gatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagag 697
||| ||||||||||| ||||| || | ||| ||||| ||| | ||||| | |||| |||
Sbjct: 231 gatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgag 172
Query: 698 gttgttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcacaag 757
|||||| | ||||||| |||| || ||||| | || || | |||||||||||||| |
Sbjct: 171 gttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcaccaa 112
Query: 758 gaaggagttgttcttcctcacaacctgccagatcagatcccctggaacggttgccatttc 817
||| ||||||| ||| |||| | || |||||||| | |||||||| || ||||||||
Sbjct: 111 gaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgccatttc 52
>gb|CF652487.1|CF652487 58-L020526w-066-003-D16-SP6P MPIZ-ADIS-066 Arabidopsis thaliana
cDNA clone MPIZp2001D163Q 5-PRIME, mRNA sequence
Length = 661
Score = 63.9 bits (32), Expect = 5e-008
Identities = 188/240 (78%)
Strand = Plus / Minus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| |||||| |||| | |||
Sbjct: 283 gttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggcctg 224
Query: 638 gatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagag 697
||| ||||||||||| ||||| || | ||| ||||| ||| | ||||| | |||| |||
Sbjct: 223 gatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgag 164
Query: 698 gttgttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcacaag 757
|||||| | ||||||| |||| || ||||| | || || | |||||||||||||| |
Sbjct: 163 gttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcaccaa 104
Query: 758 gaaggagttgttcttcctcacaacctgccagatcagatcccctggaacggttgccatttc 817
||| ||||||| ||| |||| | || |||||||| | |||||||| || ||||||||
Sbjct: 103 gaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgccatttc 44
>gb|CK120324.1|CK120324 207m05.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011M05207
5-PRIME, mRNA sequence
Length = 623
Score = 63.9 bits (32), Expect = 5e-008
Identities = 188/240 (78%)
Strand = Plus / Minus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| |||||| |||| | |||
Sbjct: 287 gttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggcctg 228
Query: 638 gatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagag 697
||| ||||||||||| ||||| || | ||| ||||| ||| | ||||| | |||| |||
Sbjct: 227 gatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgag 168
Query: 698 gttgttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcacaag 757
|||||| | ||||||| |||| || ||||| | || || | |||||||||||||| |
Sbjct: 167 gttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcaccaa 108
Query: 758 gaaggagttgttcttcctcacaacctgccagatcagatcccctggaacggttgccatttc 817
||| ||||||| ||| |||| | || |||||||| | |||||||| || ||||||||
Sbjct: 107 gaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgccatttc 48
>gb|AY050769.1| Arabidopsis thaliana putative ribosomal protein L28 (At2g19730)
mRNA, complete cds
Length = 647
Score = 63.9 bits (32), Expect = 5e-008
Identities = 188/240 (78%)
Strand = Plus / Minus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| |||||| |||| | |||
Sbjct: 296 gttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggcctg 237
Query: 638 gatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagag 697
||| ||||||||||| ||||| || | ||| ||||| ||| | ||||| | |||| |||
Sbjct: 236 gatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgag 177
Query: 698 gttgttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcacaag 757
|||||| | ||||||| |||| || ||||| | || || | |||||||||||||| |
Sbjct: 176 gttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcaccaa 117
Query: 758 gaaggagttgttcttcctcacaacctgccagatcagatcccctggaacggttgccatttc 817
||| ||||||| ||| |||| | || |||||||| | |||||||| || ||||||||
Sbjct: 116 gaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgccatttc 57
>emb|BX821549.1|CNS0A8EE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL52ZB05 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 701
Score = 63.9 bits (32), Expect = 5e-008
Identities = 188/240 (78%)
Strand = Plus / Minus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| |||||| |||| | |||
Sbjct: 284 gttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggcctg 225
Query: 638 gatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagag 697
||| ||||||||||| ||||| || | ||| ||||| ||| | ||||| | |||| |||
Sbjct: 224 gatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgag 165
Query: 698 gttgttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcacaag 757
|||||| | ||||||| |||| || ||||| | || || | |||||||||||||| |
Sbjct: 164 gttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcaccaa 105
Query: 758 gaaggagttgttcttcctcacaacctgccagatcagatcccctggaacggttgccatttc 817
||| ||||||| ||| |||| | || |||||||| | |||||||| || ||||||||
Sbjct: 104 gaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgccatttc 45
>emb|BX820934.1|CNS0A8QP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH82ZG10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 695
Score = 63.9 bits (32), Expect = 5e-008
Identities = 188/240 (78%)
Strand = Plus / Minus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| |||||| |||| | |||
Sbjct: 282 gttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggcctg 223
Query: 638 gatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagag 697
||| ||||||||||| ||||| || | ||| ||||| ||| | ||||| | |||| |||
Sbjct: 222 gatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgag 163
Query: 698 gttgttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcacaag 757
|||||| | ||||||| |||| || ||||| | || || | |||||||||||||| |
Sbjct: 162 gttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcaccaa 103
Query: 758 gaaggagttgttcttcctcacaacctgccagatcagatcccctggaacggttgccatttc 817
||| ||||||| ||| |||| | || |||||||| | |||||||| || ||||||||
Sbjct: 102 gaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgccatttc 43
>ref|NM_127531.2| Arabidopsis thaliana structural constituent of ribosome AT2G19730
transcript variant AT2G19730.1 mRNA, complete cds
Length = 717
Score = 63.9 bits (32), Expect = 5e-008
Identities = 188/240 (78%)
Strand = Plus / Minus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| |||||| |||| | |||
Sbjct: 296 gttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggcctg 237
Query: 638 gatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagag 697
||| ||||||||||| ||||| || | ||| ||||| ||| | ||||| | |||| |||
Sbjct: 236 gatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgag 177
Query: 698 gttgttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcacaag 757
|||||| | ||||||| |||| || ||||| | || || | |||||||||||||| |
Sbjct: 176 gttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcaccaa 117
Query: 758 gaaggagttgttcttcctcacaacctgccagatcagatcccctggaacggttgccatttc 817
||| ||||||| ||| |||| | || |||||||| | |||||||| || ||||||||
Sbjct: 116 gaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgccatttc 57
>ref|NM_001036297.1| Arabidopsis thaliana structural constituent of ribosome AT2G19730
transcript variant AT2G19730.2 mRNA, complete cds
Length = 721
Score = 63.9 bits (32), Expect = 5e-008
Identities = 188/240 (78%)
Strand = Plus / Minus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| |||||| |||| | |||
Sbjct: 300 gttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggcctg 241
Query: 638 gatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagag 697
||| ||||||||||| ||||| || | ||| ||||| ||| | ||||| | |||| |||
Sbjct: 240 gatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgag 181
Query: 698 gttgttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcacaag 757
|||||| | ||||||| |||| || ||||| | || || | |||||||||||||| |
Sbjct: 180 gttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcaccaa 121
Query: 758 gaaggagttgttcttcctcacaacctgccagatcagatcccctggaacggttgccatttc 817
||| ||||||| ||| |||| | || |||||||| | |||||||| || ||||||||
Sbjct: 120 gaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgccatttc 61
>gb|BE038429.1|BE038429 AA17D06 AA Arabidopsis thaliana cDNA 5' similar to ribosomal
protein l28, mRNA sequence
Length = 699
Score = 61.9 bits (31), Expect = 2e-007
Identities = 169/215 (78%)
Strand = Plus / Minus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| |||||| |||| | |||
Sbjct: 242 gttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggcctg 183
Query: 638 gatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagag 697
||| ||||||||||| ||||| || | ||| ||||| ||| | ||||| | |||| |||
Sbjct: 182 gatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgag 123
Query: 698 gttgttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcacaag 757
|||||| | ||||||| |||| || ||||| | || || | |||||||||||||| |
Sbjct: 122 gttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcaccaa 63
Query: 758 gaaggagttgttcttcctcacaacctgccagatca 792
||| ||||||| ||| |||| | || ||||||||
Sbjct: 62 gaaacagttgttgttcttcacgatctcccagatca 28
>gb|CF652803.1|CF652803 77-L020578-066-004-I20-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001I204Q 5-PRIME, mRNA sequence
Length = 616
Score = 61.9 bits (31), Expect = 2e-007
Identities = 169/215 (78%)
Strand = Plus / Minus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| |||||| |||| | |||
Sbjct: 217 gttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggcctg 158
Query: 638 gatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagag 697
||| ||||||||||| ||||| || | ||| ||||| ||| | ||||| | |||| |||
Sbjct: 157 gatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgag 98
Query: 698 gttgttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcacaag 757
|||||| | ||||||| |||| || ||||| | || || | |||||||||||||| |
Sbjct: 97 gttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcaccaa 38
Query: 758 gaaggagttgttcttcctcacaacctgccagatca 792
||| ||||||| ||| |||| | || ||||||||
Sbjct: 37 gaaacagttgttgttcttcacgatctcccagatca 3
>gb|AY079378.1| Arabidopsis thaliana putative ribosomal protein L28 (At2g19730)
mRNA, complete cds
Length = 463
Score = 61.9 bits (31), Expect = 2e-007
Identities = 169/215 (78%)
Strand = Plus / Minus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| |||||| |||| | |||
Sbjct: 237 gttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggcctg 178
Query: 638 gatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagag 697
||| ||||||||||| ||||| || | ||| ||||| ||| | ||||| | |||| |||
Sbjct: 177 gatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgag 118
Query: 698 gttgttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcacaag 757
|||||| | ||||||| |||| || ||||| | || || | |||||||||||||| |
Sbjct: 117 gttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcaccaa 58
Query: 758 gaaggagttgttcttcctcacaacctgccagatca 792
||| ||||||| ||| |||| | || ||||||||
Sbjct: 57 gaaacagttgttgttcttcacgatctcccagatca 23
>emb|AX506227.1| Sequence 922 from Patent WO0216655
Length = 432
Score = 61.9 bits (31), Expect = 2e-007
Identities = 169/215 (78%)
Strand = Plus / Minus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| |||||| |||| | |||
Sbjct: 237 gttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggcctg 178
Query: 638 gatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagag 697
||| ||||||||||| ||||| || | ||| ||||| ||| | ||||| | |||| |||
Sbjct: 177 gatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgag 118
Query: 698 gttgttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcacaag 757
|||||| | ||||||| |||| || ||||| | || || | |||||||||||||| |
Sbjct: 117 gttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcaccaa 58
Query: 758 gaaggagttgttcttcctcacaacctgccagatca 792
||| ||||||| ||| |||| | || ||||||||
Sbjct: 57 gaaacagttgttgttcttcacgatctcccagatca 23
>gb|AV550092.1|AV550092 AV550092 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ108b04R 5', mRNA sequence
Length = 422
Score = 60.0 bits (30), Expect = 7e-007
Identities = 120/150 (80%)
Strand = Plus / Minus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| |||||| |||| | |||
Sbjct: 199 gttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggcctg 140
Query: 638 gatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagag 697
||| ||||||||||| ||||| || | ||| ||||| ||| | ||||| | |||| |||
Sbjct: 139 gatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgag 80
Query: 698 gttgttcggctccttggtgaactgcacctt 727
|||||| | ||||||| |||| || |||||
Sbjct: 79 gttgttagtctccttgctgaattgaacctt 50
>gb|AV822896.1|AV822896 AV822896 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-12-O17 5',
mRNA sequence
Length = 676
Score = 58.0 bits (29), Expect = 3e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 642 gtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagaggttg 701
||||| ||||| ||||| |||||||| ||||| ||| | |||| ||||||| |||||||
Sbjct: 251 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 192
Query: 702 ttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcac 754
|| ||| ||| ||||||| ||||||||||| || | ||||| ||||||||
Sbjct: 191 ttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 139
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 450 agcctagcaagagctggcttggtcagatcaggcctgtagtagttgtc 496
||||||||||| |||| || ||| |||||||||||||||||||||
Sbjct: 443 agcctagcaagtgctgctttcttcaaatcaggcctgtagtagttgtc 397
>gb|AV553363.1|AV553363 AV553363 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ60g08R 5', mRNA sequence
Length = 548
Score = 58.0 bits (29), Expect = 3e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 642 gtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagaggttg 701
||||| ||||| ||||| |||||||| ||||| ||| | |||| ||||||| |||||||
Sbjct: 218 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 159
Query: 702 ttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcac 754
|| ||| ||| ||||||| ||||||||||| || | ||||| ||||||||
Sbjct: 158 ttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 106
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 450 agcctagcaagagctggcttggtcagatcaggcctgtagtagttgtc 496
||||||||||| |||| || ||| |||||||||||||||||||||
Sbjct: 410 agcctagcaagtgctgctttcttcaaatcaggcctgtagtagttgtc 364
>gb|AV553570.1|AV553570 AV553570 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ66c10R 5', mRNA sequence
Length = 505
Score = 58.0 bits (29), Expect = 3e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 642 gtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagaggttg 701
||||| ||||| ||||| |||||||| ||||| ||| | |||| ||||||| |||||||
Sbjct: 231 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 172
Query: 702 ttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcac 754
|| ||| ||| ||||||| ||||||||||| || | ||||| ||||||||
Sbjct: 171 ttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 119
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 450 agcctagcaagagctggcttggtcagatcaggcctgtagtagttgtc 496
||||||||||| |||| || ||| |||||||||||||||||||||
Sbjct: 423 agcctagcaagtgctgctttcttcaaatcaggcctgtagtagttgtc 377
>gb|BP814878.1|BP814878 BP814878 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-37-C10 5',
mRNA sequence
Length = 391
Score = 58.0 bits (29), Expect = 3e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 642 gtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagaggttg 701
||||| ||||| ||||| |||||||| ||||| ||| | |||| ||||||| |||||||
Sbjct: 282 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 223
Query: 702 ttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcac 754
|| ||| ||| ||||||| ||||||||||| || | ||||| ||||||||
Sbjct: 222 ttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 170
>gb|BP855931.1|BP855931 BP855931 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-28-E24 5',
mRNA sequence
Length = 410
Score = 58.0 bits (29), Expect = 3e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 642 gtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagaggttg 701
||||| ||||| ||||| |||||||| ||||| ||| | |||| ||||||| |||||||
Sbjct: 214 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 155
Query: 702 ttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcac 754
|| ||| ||| ||||||| ||||||||||| || | ||||| ||||||||
Sbjct: 154 ttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 102
>gb|AY072328.1| Arabidopsis thaliana putative protein (At4g29410) mRNA, complete
cds
Length = 660
Score = 58.0 bits (29), Expect = 3e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 642 gtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagaggttg 701
||||| ||||| ||||| |||||||| ||||| ||| | |||| ||||||| |||||||
Sbjct: 250 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 191
Query: 702 ttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcac 754
|| ||| ||| ||||||| ||||||||||| || | ||||| ||||||||
Sbjct: 190 ttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 138
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 450 agcctagcaagagctggcttggtcagatcaggcctgtagtagttgtc 496
||||||||||| |||| || ||| |||||||||||||||||||||
Sbjct: 442 agcctagcaagtgctgctttcttcaaatcaggcctgtagtagttgtc 396
>gb|BT000047.1| Arabidopsis thaliana putative protein (At4g29410) mRNA, complete
cds
Length = 556
Score = 58.0 bits (29), Expect = 3e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 642 gtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagaggttg 701
||||| ||||| ||||| |||||||| ||||| ||| | |||| ||||||| |||||||
Sbjct: 173 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 114
Query: 702 ttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcac 754
|| ||| ||| ||||||| ||||||||||| || | ||||| ||||||||
Sbjct: 113 ttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 61
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 450 agcctagcaagagctggcttggtcagatcaggcctgtagtagttgtc 496
||||||||||| |||| || ||| |||||||||||||||||||||
Sbjct: 365 agcctagcaagtgctgctttcttcaaatcaggcctgtagtagttgtc 319
>gb|AY088304.1| Arabidopsis thaliana clone 5426 mRNA, complete sequence
Length = 665
Score = 58.0 bits (29), Expect = 3e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 642 gtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagaggttg 701
||||| ||||| ||||| |||||||| ||||| ||| | |||| ||||||| |||||||
Sbjct: 255 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 196
Query: 702 ttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcac 754
|| ||| ||| ||||||| ||||||||||| || | ||||| ||||||||
Sbjct: 195 ttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 143
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 450 agcctagcaagagctggcttggtcagatcaggcctgtagtagttgtc 496
||||||||||| |||| || ||| |||||||||||||||||||||
Sbjct: 447 agcctagcaagtgctgctttcttcaaatcaggcctgtagtagttgtc 401
>emb|BX828625.1|CNS0A2F6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL22ZH11 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 691
Score = 58.0 bits (29), Expect = 3e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 642 gtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagaggttg 701
||||| ||||| ||||| |||||||| ||||| ||| | |||| ||||||| |||||||
Sbjct: 237 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 178
Query: 702 ttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcac 754
|| ||| ||| ||||||| ||||||||||| || | ||||| ||||||||
Sbjct: 177 ttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 125
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 450 agcctagcaagagctggcttggtcagatcaggcctgtagtagttgtc 496
||||||||||| |||| || ||| |||||||||||||||||||||
Sbjct: 429 agcctagcaagtgctgctttcttcaaatcaggcctgtagtagttgtc 383
>emb|BX829363.1|CNS0A3JN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL95ZC06 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 675
Score = 58.0 bits (29), Expect = 3e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 642 gtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagaggttg 701
||||| ||||| ||||| |||||||| ||||| ||| | |||| ||||||| |||||||
Sbjct: 240 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 181
Query: 702 ttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcac 754
|| ||| ||| ||||||| ||||||||||| || | ||||| ||||||||
Sbjct: 180 ttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 128
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 450 agcctagcaagagctggcttggtcagatcaggcctgtagtagttgtc 496
||||||||||| |||| || ||| |||||||||||||||||||||
Sbjct: 432 agcctagcaagtgctgctttcttcaaatcaggcctgtagtagttgtc 386
>ref|NM_119086.3| Arabidopsis thaliana structural constituent of ribosome AT4G29410
mRNA, complete cds
Length = 709
Score = 58.0 bits (29), Expect = 3e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 642 gtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagaggttg 701
||||| ||||| ||||| |||||||| ||||| ||| | |||| ||||||| |||||||
Sbjct: 255 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 196
Query: 702 ttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcac 754
|| ||| ||| ||||||| ||||||||||| || | ||||| ||||||||
Sbjct: 195 ttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 143
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 450 agcctagcaagagctggcttggtcagatcaggcctgtagtagttgtc 496
||||||||||| |||| || ||| |||||||||||||||||||||
Sbjct: 447 agcctagcaagtgctgctttcttcaaatcaggcctgtagtagttgtc 401
>gb|T22823.1|T22823 4831 Lambda-PRL2 Arabidopsis thaliana cDNA clone 107I10T7, mRNA
sequence
Length = 489
Score = 56.0 bits (28), Expect = 1e-005
Identities = 186/240 (77%)
Strand = Plus / Minus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || ||| || ||||| |||||| |||| | |||
Sbjct: 271 gttctgcttcttggtcttggtggtgncgagnacaacagcttggtccttgtcagcggcctg 212
Query: 638 gatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagag 697
||| ||||||||||| ||||| || | ||| ||||| ||| | ||||| | |||| |||
Sbjct: 211 gatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgag 152
Query: 698 gttgttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcacaag 757
|||||| | ||||||| |||| || ||||| | || || | |||||||||||||| |
Sbjct: 151 gttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcaccaa 92
Query: 758 gaaggagttgttcttcctcacaacctgccagatcagatcccctggaacggttgccatttc 817
||| ||||||| ||| | || | || |||||||| | |||||||| || ||||||||
Sbjct: 91 gaaanagttgttgttcttnacgatctcccagatcaattgtcctggaactgtcgccatttc 32
>gb|CF652479.1|CF652479 58-L020167-066-001-D16-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001D161Q 5-PRIME, mRNA sequence
Length = 689
Score = 56.0 bits (28), Expect = 1e-005
Identities = 187/240 (77%)
Strand = Plus / Minus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| ||||| |||| | |||
Sbjct: 284 gttctgcttcttggtcttggtggtggcgagcacaacagcttggtcctagtcagcggcctg 225
Query: 638 gatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagag 697
||| ||||||||||| ||||| || | ||| ||||| ||| | ||||| | |||| |||
Sbjct: 224 gatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgag 165
Query: 698 gttgttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcacaag 757
|||||| | ||||||| |||| || ||||| | || || | |||||||||||||| |
Sbjct: 164 gttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcaccaa 105
Query: 758 gaaggagttgttcttcctcacaacctgccagatcagatcccctggaacggttgccatttc 817
||| ||||||| ||| |||| | || |||||||| | |||||||| || ||||||||
Sbjct: 104 gaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgccatttc 45
>gb|BP644973.1|BP644973 BP644973 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-67-D17 3',
mRNA sequence
Length = 389
Score = 54.0 bits (27), Expect = 4e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 450 agcctagcaagagctggcttggtcagatcaggcctgtagtagttgtc 496
||||||||||| ||||| || ||| |||||||||||||||||||||
Sbjct: 263 agcctagcaagtgctggtttcttcaaatcaggcctgtagtagttgtc 309
>gb|BP796967.1|BP796967 BP796967 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-01-J10 5',
mRNA sequence
Length = 391
Score = 52.0 bits (26), Expect = 2e-004
Identities = 119/150 (79%)
Strand = Plus / Minus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| |||||| |||| | |||
Sbjct: 295 gttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggcctg 236
Query: 638 gatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagag 697
||| ||||||||||| ||||| || | ||| ||||| ||| | ||||| | |||| |||
Sbjct: 235 gatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgag 176
Query: 698 gttgttcggctccttggtgaactgcacctt 727
||| || | ||||||| |||| || |||||
Sbjct: 175 gtttttagtctccttgctgaattgaacctt 146
>gb|AV819301.1|AV819301 AV819301 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-03-J09 3',
mRNA sequence
Length = 421
Score = 50.1 bits (25), Expect = 7e-004
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| |||||| |||| | |||
Sbjct: 341 gttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggcctg 400
Query: 638 gatcgtcacagtcttcttgtt 658
||| ||||||||||| |||||
Sbjct: 401 gatggtcacagtctttttgtt 421
>gb|BP597676.1|BP597676 BP597676 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-40-H08 3',
mRNA sequence
Length = 424
Score = 50.1 bits (25), Expect = 7e-004
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| |||||| |||| | |||
Sbjct: 340 gttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggcctg 399
Query: 638 gatcgtcacagtcttcttgtt 658
||| ||||||||||| |||||
Sbjct: 400 gatggtcacagtctttttgtt 420
>gb|BP669895.1|BP669895 BP669895 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-33-B01 3',
mRNA sequence
Length = 419
Score = 50.1 bits (25), Expect = 7e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 476 atcaggcctgtagtagttgtcacta 500
|||||||||||||||||||||||||
Sbjct: 265 atcaggcctgtagtagttgtcacta 289
>gb|BP865812.1|BP865812 BP865812 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-75-I09 5',
mRNA sequence
Length = 379
Score = 50.1 bits (25), Expect = 7e-004
Identities = 91/113 (80%)
Strand = Plus / Minus
Query: 642 gtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagaggttg 701
||||| ||||| ||||| |||||||| ||||| ||| | |||| ||||||| |||||||
Sbjct: 254 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 195
Query: 702 ttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcac 754
|| | | ||| ||||||| ||||||||||| || | ||||| ||||||||
Sbjct: 194 ttgctccctttgctgaactgaaccttggcattacctctaccgaattgcttcac 142
>gb|AC005169.3| Arabidopsis thaliana chromosome 2 clone F6F22 map mi148, complete
sequence
Length = 126386
Score = 50.1 bits (25), Expect = 7e-004
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| |||||| |||| | |||
Sbjct: 110937 gttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggcctg 110996
Query: 638 gatcgtcacagtcttcttgtt 658
||| ||||||||||| |||||
Sbjct: 110997 gatggtcacagtctttttgtt 111017
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 50.1 bits (25), Expect = 7e-004
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| |||||| |||| | |||
Sbjct: 8519540 gttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggcctg 8519481
Query: 638 gatcgtcacagtcttcttgtt 658
||| ||||||||||| |||||
Sbjct: 8519480 gatggtcacagtctttttgtt 8519460
>gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH10 similar to putative protein, mRNA
sequence
Length = 305
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 896 ccgcgtacctgcccgggcggccgc 919
||||||||||||||||||||||||
Sbjct: 274 ccgcgtacctgcccgggcggccgc 297
>gb|BP842751.1|BP842751 BP842751 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-55-N20 5',
mRNA sequence
Length = 380
Score = 48.1 bits (24), Expect = 0.003
Identities = 188/240 (78%), Gaps = 2/240 (0%)
Strand = Plus / Minus
Query: 578 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttgcagctggctg 637
||||||||||||||||||||| || | ||| || ||||| ||||||| || | | |||
Sbjct: 298 gttctgcttcttggtcttggt-gtggcgagcacaacagctt-gtccttttcaccggcctg 241
Query: 638 gatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgtagag 697
||| ||||||||||| ||||| || | ||| ||||| ||| | ||||| | |||| |||
Sbjct: 240 gatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgag 181
Query: 698 gttgttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcacaag 757
|||||| | ||||||| |||| || ||||| | || || | |||||||||||||| |
Sbjct: 180 gttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcaccaa 121
Query: 758 gaaggagttgttcttcctcacaacctgccagatcagatcccctggaacggttgccatttc 817
||| ||||||| ||| |||| | || |||||||| | |||||||| || ||||||||
Sbjct: 120 gaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgccatttc 61
>gb|BE529472.1|BE529472 M74D16STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600038758R1 5', mRNA sequence
Length = 236
Score = 46.1 bits (23), Expect = 0.011
Identities = 143/183 (78%)
Strand = Plus / Minus
Query: 635 ctggatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagtggatgttgta 694
|||||| ||||||||||| ||||| || | ||| ||||| ||| | ||||| | ||||
Sbjct: 217 ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggt 158
Query: 695 gaggttgttcggctccttggtgaactgcaccttggcattgccgttgccgaactgcttcac 754
||||||||| | ||||||| |||| || ||||| | || || | ||||||||||||||
Sbjct: 157 gaggttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcac 98
Query: 755 aaggaaggagttgttcttcctcacaacctgccagatcagatcccctggaacggttgccat 814
| ||| ||||||| ||| |||| | || |||||||| | |||||||| || |||||
Sbjct: 97 caagaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgccat 38
Query: 815 ttc 817
|||
Sbjct: 37 ttc 35
>gb|AV783763.1|AV783763 AV783763 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-12-O17 3',
mRNA sequence
Length = 367
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 450 agcctagcaagagctggcttggtcagatcaggcctgtagtagttgtc 496
||||||||||| |||| || ||| |||||||||||||||||||||
Sbjct: 220 agcctagcaagtgctgctttcttcaaatcaggcctgtagtagttgtc 266
>gb|AV785568.1|AV785568 AV785568 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-67-F18 3',
mRNA sequence
Length = 443
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 450 agcctagcaagagctggcttggtcagatcaggcctgtagtagttgtc 496
||||||||||| |||| || ||| |||||||||||||||||||||
Sbjct: 224 agcctagcaagtgctgctttcttcaaatcaggcctgtagtagttgtc 270
>gb|AV788181.1|AV788181 AV788181 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-78-H05 3',
mRNA sequence
Length = 416
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 450 agcctagcaagagctggcttggtcagatcaggcctgtagtagttgtc 496
||||||||||| |||| || ||| |||||||||||||||||||||
Sbjct: 224 agcctagcaagtgctgctttcttcaaatcaggcctgtagtagttgtc 270
>gb|AV801623.1|AV801623 AV801623 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-28-O18 3',
mRNA sequence
Length = 422
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 450 agcctagcaagagctggcttggtcagatcaggcctgtagtagttgtc 496
||||||||||| |||| || ||| |||||||||||||||||||||
Sbjct: 238 agcctagcaagtgctgctttcttcaaatcaggcctgtagtagttgtc 284
>gb|AV544835.1|AV544835 AV544835 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ60g08F 3', mRNA sequence
Length = 442
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 450 agcctagcaagagctggcttggtcagatcaggcctgtagtagttgtc 496
||||||||||| |||| || ||| |||||||||||||||||||||
Sbjct: 245 agcctagcaagtgctgctttcttcaaatcaggcctgtagtagttgtc 291
>gb|AV544976.1|AV544976 AV544976 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ66c10F 3', mRNA sequence
Length = 469
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 450 agcctagcaagagctggcttggtcagatcaggcctgtagtagttgtc 496
||||||||||| |||| || ||| |||||||||||||||||||||
Sbjct: 226 agcctagcaagtgctgctttcttcaaatcaggcctgtagtagttgtc 272
>gb|AV556012.1|AV556012 AV556012 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ032e07F 3', mRNA sequence
Length = 404
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 450 agcctagcaagagctggcttggtcagatcaggcctgtagtagttgtc 496
||||||||||| |||| || ||| |||||||||||||||||||||
Sbjct: 235 agcctagcaagtgctgctttcttcaaatcaggcctgtagtagttgtc 281
>gb|BP633203.1|BP633203 BP633203 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-29-P07 3',
mRNA sequence
Length = 406
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 450 agcctagcaagagctggcttggtcagatcaggcctgtagtagttgtc 496
||||||||||| |||| || ||| |||||||||||||||||||||
Sbjct: 242 agcctagcaagtgctgctttcttcaaatcaggcctgtagtagttgtc 288
>gb|BP650443.1|BP650443 BP650443 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-84-G14 3',
mRNA sequence
Length = 407
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 450 agcctagcaagagctggcttggtcagatcaggcctgtagtagttgtc 496
||||||||||| |||| || ||| |||||||||||||||||||||
Sbjct: 235 agcctagcaagtgctgctttcttcaaatcaggcctgtagtagttgtc 281
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 559,188
Number of Sequences: 1013581
Number of extensions: 559188
Number of successful extensions: 37998
Number of sequences better than 0.5: 65
Number of HSP's better than 0.5 without gapping: 63
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 37231
Number of HSP's gapped (non-prelim): 723
length of query: 919
length of database: 908,940,872
effective HSP length: 20
effective length of query: 899
effective length of database: 888,669,252
effective search space: 798913657548
effective search space used: 798913657548
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)