BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.569
(1263 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|BX831189.1|CNS09YSI Arabidopsis thaliana Full-length cD... 94 7e-017
emb|BX831000.1|CNS0A0SR Arabidopsis thaliana Full-length cD... 94 7e-017
gb|BU635349.1|BU635349 020H03 Infected Arabidopsis Leaf Ara... 86 2e-014
gb|AV541794.1|AV541794 AV541794 Arabidopsis thaliana roots ... 86 2e-014
gb|AV559810.1|AV559810 AV559810 Arabidopsis thaliana green ... 86 2e-014
gb|AF428338.1|AF428338 Arabidopsis thaliana AT5g66680/MSN2_... 86 2e-014
gb|AY150381.1| Arabidopsis thaliana putative dolichyl-di-ph... 86 2e-014
gb|AY085807.1| Arabidopsis thaliana clone 18419 mRNA, compl... 86 2e-014
ref|NM_126066.3| Arabidopsis thaliana DGL1; dolichyl-diphos... 86 2e-014
gb|AY034944.1| Arabidopsis thaliana putative dolichyl-di-ph... 78 4e-012
gb|BE525092.1|BE525092 M58D6STM Arabidopsis developing seed... 56 2e-005
gb|BE528349.1|BE528349 M79G08STM Arabidopsis developing see... 56 2e-005
gb|AV822470.1|AV822470 AV822470 RAFL5 Arabidopsis thaliana ... 56 2e-005
gb|AV829748.1|AV829748 AV829748 RAFL9 Arabidopsis thaliana ... 56 2e-005
emb|BX832898.1|CNS0A0F3 Arabidopsis thaliana Full-length cD... 56 2e-005
gb|AV783247.1|AV783247 AV783247 RAFL5 Arabidopsis thaliana ... 54 6e-005
gb|AV538812.1|AV538812 AV538812 Arabidopsis thaliana roots ... 54 6e-005
gb|BP563274.1|BP563274 BP563274 RAFL14 Arabidopsis thaliana... 54 6e-005
gb|BP570017.1|BP570017 BP570017 RAFL14 Arabidopsis thaliana... 54 6e-005
gb|BP581925.1|BP581925 BP581925 RAFL14 Arabidopsis thaliana... 54 6e-005
gb|BP587696.1|BP587696 BP587696 RAFL15 Arabidopsis thaliana... 54 6e-005
gb|BP794192.1|BP794192 BP794192 RAFL7 Arabidopsis thaliana ... 54 6e-005
emb|AL089416.1|CNS00T9M Arabidopsis thaliana genome survey ... 52 2e-004
gb|CL463944.1|CL463944 SAIL_1210_F08.v1 SAIL Collection Ara... 52 2e-004
gb|AV791692.1|AV791692 AV791692 RAFL7 Arabidopsis thaliana ... 52 2e-004
gb|AV813063.1|AV813063 AV813063 RAFL9 Arabidopsis thaliana ... 52 2e-004
gb|BP583158.1|BP583158 BP583158 RAFL14 Arabidopsis thaliana... 52 2e-004
gb|BP585485.1|BP585485 BP585485 RAFL15 Arabidopsis thaliana... 52 2e-004
gb|BP589381.1|BP589381 BP589381 RAFL15 Arabidopsis thaliana... 52 2e-004
dbj|AB018119.1| Arabidopsis thaliana genomic DNA, chromosom... 52 2e-004
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 52 2e-004
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 52 2e-004
gb|BP588586.1|BP588586 BP588586 RAFL15 Arabidopsis thaliana... 50 0.001
gb|BP596827.1|BP596827 BP596827 RAFL15 Arabidopsis thaliana... 50 0.001
gb|BP597390.1|BP597390 BP597390 RAFL15 Arabidopsis thaliana... 50 0.001
gb|BP783581.1|BP783581 BP783581 RAFL7 Arabidopsis thaliana ... 50 0.001
gb|BP793887.1|BP793887 BP793887 RAFL7 Arabidopsis thaliana ... 50 0.001
gb|AV792945.1|AV792945 AV792945 RAFL7 Arabidopsis thaliana ... 48 0.004
gb|AV797929.1|AV797929 AV797929 RAFL9 Arabidopsis thaliana ... 48 0.004
gb|AV809092.1|AV809092 AV809092 RAFL9 Arabidopsis thaliana ... 48 0.004
gb|AV813637.1|AV813637 AV813637 RAFL9 Arabidopsis thaliana ... 48 0.004
gb|AV440737.1|AV440737 AV440737 Arabidopsis thaliana above-... 48 0.004
gb|BP566046.1|BP566046 BP566046 RAFL14 Arabidopsis thaliana... 48 0.004
gb|BP569638.1|BP569638 BP569638 RAFL14 Arabidopsis thaliana... 48 0.004
gb|BP573855.1|BP573855 BP573855 RAFL14 Arabidopsis thaliana... 48 0.004
gb|BP579972.1|BP579972 BP579972 RAFL14 Arabidopsis thaliana... 48 0.004
gb|BP594644.1|BP594644 BP594644 RAFL15 Arabidopsis thaliana... 48 0.004
gb|BP597175.1|BP597175 BP597175 RAFL15 Arabidopsis thaliana... 48 0.004
gb|BP609163.1|BP609163 BP609163 RAFL16 Arabidopsis thaliana... 48 0.004
gb|BP614087.1|BP614087 BP614087 RAFL16 Arabidopsis thaliana... 48 0.004
gb|BP617561.1|BP617561 BP617561 RAFL16 Arabidopsis thaliana... 48 0.004
gb|BP629190.1|BP629190 BP629190 RAFL17 Arabidopsis thaliana... 48 0.004
gb|BP631889.1|BP631889 BP631889 RAFL17 Arabidopsis thaliana... 48 0.004
gb|BP647297.1|BP647297 BP647297 RAFL19 Arabidopsis thaliana... 48 0.004
gb|BP778186.1|BP778186 BP778186 RAFL7 Arabidopsis thaliana ... 48 0.004
gb|BP778208.1|BP778208 BP778208 RAFL7 Arabidopsis thaliana ... 48 0.004
gb|BP783452.1|BP783452 BP783452 RAFL7 Arabidopsis thaliana ... 48 0.004
gb|BP787806.1|BP787806 BP787806 RAFL7 Arabidopsis thaliana ... 48 0.004
gb|BP790587.1|BP790587 BP790587 RAFL7 Arabidopsis thaliana ... 48 0.004
gb|BE525094.1|BE525094 M58D8STM Arabidopsis developing seed... 46 0.015
gb|BP576056.1|BP576056 BP576056 RAFL14 Arabidopsis thaliana... 46 0.015
gb|BP626083.1|BP626083 BP626083 RAFL17 Arabidopsis thaliana... 44 0.058
gb|BP671008.1|BP671008 BP671008 RAFL21 Arabidopsis thaliana... 44 0.058
gb|BP646002.1|BP646002 BP646002 RAFL19 Arabidopsis thaliana... 42 0.23
>emb|BX831189.1|CNS09YSI Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS67ZA03 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1510
Score = 93.7 bits (47), Expect = 7e-017
Identities = 298/379 (78%), Gaps = 2/379 (0%)
Strand = Plus / Minus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctttgtaaaagacaaacca 446
||||||||||| || || |||||||| ||||| ||||||||||| | || ||| || |
Sbjct: 1260 ctctcatactcattgtgtctgtaaggccgcaccggaatctgcttcgaaagagataatgta 1201
Query: 447 gtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaact 506
|| || || ||| | | || ||||| || |||||||| || |||||||||||||||||
Sbjct: 1200 gtgtagcctagcttttcatattcaaccttaaactggaatacaccgtagacatcaggaacc 1141
Query: 507 ttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataagg 565
||||| ||||| |||| | | |||||| ||||| | |||| ||||||| ||||| ||
Sbjct: 1140 ttgaaagatgtatgag-acagacccttcttgtctgttgacagggttttcaacacatacgg 1082
Query: 566 actcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttcc 625
||||||||| ||||||| | |||||||| | ||||||||| |||| |||||| ||||
Sbjct: 1081 gctcatcatgtaaaactgaacctgcacatcgttagcaacatacggctcccagctctttcc 1022
Query: 626 agaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtacatgcctgg 685
||||| ||||| ||||| ||||| ||||||||||||| || || | || || ||||
Sbjct: 1021 tgaccactcatatatctctacagaaaattccaggtcatcctttatcctatatatagctgg 962
Query: 686 ttcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgccccctctc 745
|||| || || |||||| | ||||| || |||| ||||||| || || ||||| ||
Sbjct: 961 ctcatctgtttctccaaccgtatggtgtacaagattaccagccttcagatggcccctttc 902
Query: 746 atggaagacccatttgctt 764
||||||||||||||||||
Sbjct: 901 gtggaagacccatttgctt 883
Score = 56.0 bits (28), Expect = 2e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1193 atcctcatcaaaatcaaccccacactctgtcgcaat 1228
||||||||| |||||||||||||||||||| |||||
Sbjct: 454 atcctcatcgaaatcaaccccacactctgtggcaat 419
Score = 46.1 bits (23), Expect = 0.015
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 967 ttgggttagctgagtatgctgatggagaggcagataggactttcagaacca 1017
|||||||||| || || |||||||||||||| || || ||||||| |||||
Sbjct: 680 ttgggttagcagaataagctgatggagaggctgaaagaactttcaaaacca 630
>emb|BX831000.1|CNS0A0SR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS47ZF06 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1640
Score = 93.7 bits (47), Expect = 7e-017
Identities = 298/379 (78%), Gaps = 2/379 (0%)
Strand = Plus / Minus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctttgtaaaagacaaacca 446
||||||||||| || || |||||||| ||||| ||||||||||| | || ||| || |
Sbjct: 1248 ctctcatactcattgtgtctgtaaggccgcaccggaatctgcttcgaaagagataatgta 1189
Query: 447 gtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaact 506
|| || || ||| | | || ||||| || |||||||| || |||||||||||||||||
Sbjct: 1188 gtgtagcctagcttttcatattcaaccttaaactggaatacaccgtagacatcaggaacc 1129
Query: 507 ttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataagg 565
||||| ||||| |||| | | |||||| ||||| | |||| ||||||| ||||| ||
Sbjct: 1128 ttgaaagatgtatgag-acagacccttcttgtctgttgacagggttttcaacacatacgg 1070
Query: 566 actcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttcc 625
||||||||| ||||||| | |||||||| | ||||||||| |||| |||||| ||||
Sbjct: 1069 gctcatcatgtaaaactgaacctgcacatcgttagcaacatacggctcccagctctttcc 1010
Query: 626 agaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtacatgcctgg 685
||||| ||||| ||||| ||||| ||||||||||||| || || | || || ||||
Sbjct: 1009 tgaccactcatatatctctacagaaaattccaggtcatcctttatcctatatatagctgg 950
Query: 686 ttcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgccccctctc 745
|||| || || |||||| | ||||| || |||| ||||||| || || ||||| ||
Sbjct: 949 ctcatctgtttctccaaccctatggtgtacaagattaccagccttcagatggcccctttc 890
Query: 746 atggaagacccatttgctt 764
||||||||||||||||||
Sbjct: 889 gtggaagacccatttgctt 871
Score = 56.0 bits (28), Expect = 2e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1193 atcctcatcaaaatcaaccccacactctgtcgcaat 1228
||||||||| |||||||||||||||||||| |||||
Sbjct: 441 atcctcatcgaaatcaaccccacactctgtggcaat 406
>gb|BU635349.1|BU635349 020H03 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 747
Score = 85.7 bits (43), Expect = 2e-014
Identities = 297/379 (78%), Gaps = 2/379 (0%)
Strand = Plus / Minus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctttgtaaaagacaaacca 446
||||||||||| || || |||||||| ||||| ||||||||||| | || ||| || |
Sbjct: 518 ctctcatactcattgtgtctgtaaggccgcaccggaatctgcttcgaaagagataatgta 459
Query: 447 gtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaact 506
|| || || ||| | | || ||||| || |||||||| || |||||||||||||||||
Sbjct: 458 gtgtagcctagcttttcatattcaaccttaaactggaatacaccgtagacatcaggaacc 399
Query: 507 ttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataagg 565
||||| ||||| ||| | | |||||| ||||| | |||| ||||||| ||||| ||
Sbjct: 398 ttgaaagatgtatgaa-acagacccttcttgtctgttgacagggttttcaacacatacgg 340
Query: 566 actcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttcc 625
||||||||| ||||||| | |||||||| | ||||||||| |||| |||||| ||||
Sbjct: 339 gctcatcatgtaaaactgaacctgcacatcgttagcaacatacggctcccagctctttcc 280
Query: 626 agaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtacatgcctgg 685
||||| ||||| ||||| ||||| ||||||||||||| || || | || || ||||
Sbjct: 279 tgaccactcatatatctctacagaaaattccaggtcatcctttatcctatatatagctgg 220
Query: 686 ttcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgccccctctc 745
|||| || || |||||| | ||||| || |||| ||||||| || || ||||| ||
Sbjct: 219 ctcatctgtttctccaaccctatggtgtacaagattaccagccttcagatggcccctttc 160
Query: 746 atggaagacccatttgctt 764
||||||||||||||||||
Sbjct: 159 gtggaagacccatttgctt 141
>gb|AV541794.1|AV541794 AV541794 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ171e01F 3', mRNA sequence
Length = 582
Score = 85.7 bits (43), Expect = 2e-014
Identities = 222/279 (79%), Gaps = 2/279 (0%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctttgtaaaagacaaacca 446
||||||||||| || || |||||||| ||||| ||||||||||| | || ||| || |
Sbjct: 286 ctctcatactcattgtgtctgtaaggccgcaccggaatctgcttcgaaagagataatgta 345
Query: 447 gtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaact 506
|| || || ||| | | || ||||| || |||||||| || |||||||||||||||||
Sbjct: 346 gtgtagcctagcttttcatattcaaccttaaactggaatacaccgtagacatcaggaacc 405
Query: 507 ttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataagg 565
||||| ||||| ||| | | |||||| ||||| | |||| ||||||| ||||| ||
Sbjct: 406 ttgaaagatgtatgaa-acagacccttcttgtctgttgacagggttttcaacacatacgg 464
Query: 566 actcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttcc 625
||||||||| ||||||| | |||||||| | ||||||||| |||| |||||| ||||
Sbjct: 465 gctcatcatgtaaaactgaacctgcacatcgttagcaacatacggctcccagctctttcc 524
Query: 626 agaccattcatagatctcaacagagtattccaggtcatc 664
||||| ||||| ||||| ||||| |||||||||||||
Sbjct: 525 tgaccactcatatatctctacagaaaattccaggtcatc 563
>gb|AV559810.1|AV559810 AV559810 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ124b03F 3', mRNA sequence
Length = 590
Score = 85.7 bits (43), Expect = 2e-014
Identities = 222/279 (79%), Gaps = 2/279 (0%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctttgtaaaagacaaacca 446
||||||||||| || || |||||||| ||||| ||||||||||| | || ||| || |
Sbjct: 284 ctctcatactcattgtgtctgtaaggccgcaccggaatctgcttcgaaagagataatgta 343
Query: 447 gtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaact 506
|| || || ||| | | || ||||| || |||||||| || |||||||||||||||||
Sbjct: 344 gtgtagcctagcttttcatattcaaccttaaactggaatacaccgtagacatcaggaacc 403
Query: 507 ttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataagg 565
||||| ||||| ||| | | |||||| ||||| | |||| ||||||| ||||| ||
Sbjct: 404 ttgaaagatgtatgaa-acagacccttcttgtctgttgacagggttttcaacacatacgg 462
Query: 566 actcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttcc 625
||||||||| ||||||| | |||||||| | ||||||||| |||| |||||| ||||
Sbjct: 463 gctcatcatgtaaaactgaacctgcacatcgttagcaacatacggctcccagctctttcc 522
Query: 626 agaccattcatagatctcaacagagtattccaggtcatc 664
||||| ||||| ||||| ||||| |||||||||||||
Sbjct: 523 tgaccactcatatatctctacagaaaattccaggtcatc 561
>gb|AF428338.1|AF428338 Arabidopsis thaliana AT5g66680/MSN2_7 mRNA, complete cds
Length = 1544
Score = 85.7 bits (43), Expect = 2e-014
Identities = 297/379 (78%), Gaps = 2/379 (0%)
Strand = Plus / Minus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctttgtaaaagacaaacca 446
||||||||||| || || |||||||| ||||| ||||||||||| | || ||| || |
Sbjct: 1261 ctctcatactcattgtgtctgtaaggccgcaccggaatctgcttcgaaagagataatgta 1202
Query: 447 gtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaact 506
|| || || ||| | | || ||||| || |||||||| || |||||||||||||||||
Sbjct: 1201 gtgtagcctagcttttcatattcaaccttaaactggaatacaccgtagacatcaggaacc 1142
Query: 507 ttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataagg 565
||||| ||||| ||| | | |||||| ||||| | |||| ||||||| ||||| ||
Sbjct: 1141 ttgaaagatgtatgaa-acagacccttcttgtctgttgacagggttttcaacacatacgg 1083
Query: 566 actcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttcc 625
||||||||| ||||||| | |||||||| | ||||||||| |||| |||||| ||||
Sbjct: 1082 gctcatcatgtaaaactgaacctgcacatcgttagcaacatacggctcccagctctttcc 1023
Query: 626 agaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtacatgcctgg 685
||||| ||||| ||||| ||||| ||||||||||||| || || | || || ||||
Sbjct: 1022 tgaccactcatatatctctacagaaaattccaggtcatcctttatcctatatatagctgg 963
Query: 686 ttcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgccccctctc 745
|||| || || |||||| | ||||| || |||| ||||||| || || ||||| ||
Sbjct: 962 ctcatctgtttctccaaccctatggtgtacaagattaccagccttcagatggcccctttc 903
Query: 746 atggaagacccatttgctt 764
||||||||||||||||||
Sbjct: 902 gtggaagacccatttgctt 884
Score = 56.0 bits (28), Expect = 2e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1193 atcctcatcaaaatcaaccccacactctgtcgcaat 1228
||||||||| |||||||||||||||||||| |||||
Sbjct: 455 atcctcatcgaaatcaaccccacactctgtggcaat 420
Score = 46.1 bits (23), Expect = 0.015
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 967 ttgggttagctgagtatgctgatggagaggcagataggactttcagaacca 1017
|||||||||| || || |||||||||||||| || || ||||||| |||||
Sbjct: 681 ttgggttagcagaataagctgatggagaggctgaaagaactttcaaaacca 631
>gb|AY150381.1| Arabidopsis thaliana putative dolichyl-di-phosphooligosaccharide
glycotransferase (oligosaccharyltransferase) (At5g66680)
mRNA, complete cds
Length = 1345
Score = 85.7 bits (43), Expect = 2e-014
Identities = 297/379 (78%), Gaps = 2/379 (0%)
Strand = Plus / Minus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctttgtaaaagacaaacca 446
||||||||||| || || |||||||| ||||| ||||||||||| | || ||| || |
Sbjct: 1220 ctctcatactcattgtgtctgtaaggccgcaccggaatctgcttcgaaagagataatgta 1161
Query: 447 gtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaact 506
|| || || ||| | | || ||||| || |||||||| || |||||||||||||||||
Sbjct: 1160 gtgtagcctagcttttcatattcaaccttaaactggaatacaccgtagacatcaggaacc 1101
Query: 507 ttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataagg 565
||||| ||||| ||| | | |||||| ||||| | |||| ||||||| ||||| ||
Sbjct: 1100 ttgaaagatgtatgaa-acagacccttcttgtctgttgacagggttttcaacacatacgg 1042
Query: 566 actcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttcc 625
||||||||| ||||||| | |||||||| | ||||||||| |||| |||||| ||||
Sbjct: 1041 gctcatcatgtaaaactgaacctgcacatcgttagcaacatacggctcccagctctttcc 982
Query: 626 agaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtacatgcctgg 685
||||| ||||| ||||| ||||| ||||||||||||| || || | || || ||||
Sbjct: 981 tgaccactcatatatctctacagaaaattccaggtcatcctttatcctatatatagctgg 922
Query: 686 ttcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgccccctctc 745
|||| || || |||||| | ||||| || |||| ||||||| || || ||||| ||
Sbjct: 921 ctcatctgtttctccaaccctatggtgtacaagattaccagccttcagatggcccctttc 862
Query: 746 atggaagacccatttgctt 764
||||||||||||||||||
Sbjct: 861 gtggaagacccatttgctt 843
Score = 56.0 bits (28), Expect = 2e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1193 atcctcatcaaaatcaaccccacactctgtcgcaat 1228
||||||||| |||||||||||||||||||| |||||
Sbjct: 414 atcctcatcgaaatcaaccccacactctgtggcaat 379
Score = 46.1 bits (23), Expect = 0.015
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 967 ttgggttagctgagtatgctgatggagaggcagataggactttcagaacca 1017
|||||||||| || || |||||||||||||| || || ||||||| |||||
Sbjct: 640 ttgggttagcagaataagctgatggagaggctgaaagaactttcaaaacca 590
>gb|AY085807.1| Arabidopsis thaliana clone 18419 mRNA, complete sequence
Length = 1540
Score = 85.7 bits (43), Expect = 2e-014
Identities = 297/379 (78%), Gaps = 2/379 (0%)
Strand = Plus / Minus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctttgtaaaagacaaacca 446
||||||||||| || || |||||||| ||||| ||||||||||| | || ||| || |
Sbjct: 1259 ctctcatactcattgtgtctgtaaggccgcaccggaatctgcttcgaaagagataatgta 1200
Query: 447 gtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaact 506
|| || || ||| | | || ||||| || |||||||| || |||||||||||||||||
Sbjct: 1199 gtgtagcctagcttttcatattcaaccttaaactggaatacaccgtagacatcaggaacc 1140
Query: 507 ttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataagg 565
||||| ||||| ||| | | |||||| ||||| | |||| ||||||| ||||| ||
Sbjct: 1139 ttgaaagatgtatgaa-acagacccttcttgtctgttgacagggttttcaacacatacgg 1081
Query: 566 actcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttcc 625
||||||||| ||||||| | |||||||| | ||||||||| |||| |||||| ||||
Sbjct: 1080 gctcatcatgtaaaactgaacctgcacatcgttagcaacatacggctcccagctctttcc 1021
Query: 626 agaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtacatgcctgg 685
||||| ||||| ||||| ||||| ||||||||||||| || || | || || ||||
Sbjct: 1020 tgaccactcatatatctctacagaaaattccaggtcatcctttatcctatatatagctgg 961
Query: 686 ttcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgccccctctc 745
|||| || || |||||| | ||||| || |||| ||||||| || || ||||| ||
Sbjct: 960 ctcatctgtttctccaaccctatggtgtacaagattaccagccttcagatggcccctttc 901
Query: 746 atggaagacccatttgctt 764
||||||||||||||||||
Sbjct: 900 gtggaagacccatttgctt 882
Score = 56.0 bits (28), Expect = 2e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1193 atcctcatcaaaatcaaccccacactctgtcgcaat 1228
||||||||| |||||||||||||||||||| |||||
Sbjct: 453 atcctcatcgaaatcaaccccacactctgtggcaat 418
Score = 46.1 bits (23), Expect = 0.015
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 967 ttgggttagctgagtatgctgatggagaggcagataggactttcagaacca 1017
|||||||||| || || |||||||||||||| || || ||||||| |||||
Sbjct: 679 ttgggttagcagaataagctgatggagaggctgaaagaactttcaaaacca 629
>ref|NM_126066.3| Arabidopsis thaliana DGL1; dolichyl-diphosphooligosaccharide-protein
glycotransferase AT5G66680 (DGL1) mRNA, complete cds
Length = 1696
Score = 85.7 bits (43), Expect = 2e-014
Identities = 297/379 (78%), Gaps = 2/379 (0%)
Strand = Plus / Minus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctttgtaaaagacaaacca 446
||||||||||| || || |||||||| ||||| ||||||||||| | || ||| || |
Sbjct: 1306 ctctcatactcattgtgtctgtaaggccgcaccggaatctgcttcgaaagagataatgta 1247
Query: 447 gtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaact 506
|| || || ||| | | || ||||| || |||||||| || |||||||||||||||||
Sbjct: 1246 gtgtagcctagcttttcatattcaaccttaaactggaatacaccgtagacatcaggaacc 1187
Query: 507 ttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataagg 565
||||| ||||| ||| | | |||||| ||||| | |||| ||||||| ||||| ||
Sbjct: 1186 ttgaaagatgtatgaa-acagacccttcttgtctgttgacagggttttcaacacatacgg 1128
Query: 566 actcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttcc 625
||||||||| ||||||| | |||||||| | ||||||||| |||| |||||| ||||
Sbjct: 1127 gctcatcatgtaaaactgaacctgcacatcgttagcaacatacggctcccagctctttcc 1068
Query: 626 agaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtacatgcctgg 685
||||| ||||| ||||| ||||| ||||||||||||| || || | || || ||||
Sbjct: 1067 tgaccactcatatatctctacagaaaattccaggtcatcctttatcctatatatagctgg 1008
Query: 686 ttcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgccccctctc 745
|||| || || |||||| | ||||| || |||| ||||||| || || ||||| ||
Sbjct: 1007 ctcatctgtttctccaaccctatggtgtacaagattaccagccttcagatggcccctttc 948
Query: 746 atggaagacccatttgctt 764
||||||||||||||||||
Sbjct: 947 gtggaagacccatttgctt 929
Score = 56.0 bits (28), Expect = 2e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1193 atcctcatcaaaatcaaccccacactctgtcgcaat 1228
||||||||| |||||||||||||||||||| |||||
Sbjct: 500 atcctcatcgaaatcaaccccacactctgtggcaat 465
Score = 46.1 bits (23), Expect = 0.015
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 967 ttgggttagctgagtatgctgatggagaggcagataggactttcagaacca 1017
|||||||||| || || |||||||||||||| || || ||||||| |||||
Sbjct: 726 ttgggttagcagaataagctgatggagaggctgaaagaactttcaaaacca 676
>gb|AY034944.1| Arabidopsis thaliana putative
dolichyl-di-phosphooligosaccharide-protein
glycotransferase (At5g66680) mRNA, complete cds
Length = 1608
Score = 77.8 bits (39), Expect = 4e-012
Identities = 296/379 (78%), Gaps = 2/379 (0%)
Strand = Plus / Minus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctttgtaaaagacaaacca 446
||||||||||| || || |||||||| ||||| ||||||||||| | || ||| || |
Sbjct: 1306 ctctcatactcattgtgtctgtaaggccgcaccggaatctgcttcgaaagagataatgta 1247
Query: 447 gtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaact 506
|| || || ||| | | || ||||| || |||||||| || |||||||||||||||||
Sbjct: 1246 gtgtagcctagcttttcatattcaaccttaaactggaatacaccgtagacatcaggaacc 1187
Query: 507 ttgaaggatgt-tgagtataaacccttgttgtcattcgacatagttttcagaacataagg 565
||||| ||||| ||| | | |||||| ||||| | |||| ||||||| ||||| ||
Sbjct: 1186 ttgaaagatgtatgaa-acagacccttcttgtctgttgacagggttttcaacacatacgg 1128
Query: 566 actcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccagcttgttcc 625
||||||||| ||||||| | |||||| | | ||||||||| |||| |||||| ||||
Sbjct: 1127 gctcatcatgtaaaactgaacctgcacaccgttagcaacatacggctcccagctctttcc 1068
Query: 626 agaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtacatgcctgg 685
||||| ||||| ||||| ||||| ||||||||||||| || || | || || ||||
Sbjct: 1067 tgaccactcatatatctctacagaaaattccaggtcatcctttatcctatatatagctgg 1008
Query: 686 ttcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgccccctctc 745
|||| || || |||||| | ||||| || |||| ||||||| || || ||||| ||
Sbjct: 1007 ctcatctgtttctccaaccctatggtgtacaagattaccagccttcagatggcccctttc 948
Query: 746 atggaagacccatttgctt 764
||||||||||||||||||
Sbjct: 947 gtggaagacccatttgctt 929
Score = 56.0 bits (28), Expect = 2e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1193 atcctcatcaaaatcaaccccacactctgtcgcaat 1228
||||||||| |||||||||||||||||||| |||||
Sbjct: 500 atcctcatcgaaatcaaccccacactctgtggcaat 465
Score = 46.1 bits (23), Expect = 0.015
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 967 ttgggttagctgagtatgctgatggagaggcagataggactttcagaacca 1017
|||||||||| || || |||||||||||||| || || ||||||| |||||
Sbjct: 726 ttgggttagcagaataagctgatggagaggctgaaagaactttcaaaacca 676
>gb|BE525092.1|BE525092 M58D6STM Arabidopsis developing seed Arabidopsis thaliana cDNA clone
M58D6 5', mRNA sequence
Length = 337
Score = 56.0 bits (28), Expect = 2e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1193 atcctcatcaaaatcaaccccacactctgtcgcaat 1228
||||||||| |||||||||||||||||||| |||||
Sbjct: 48 atcctcatcgaaatcaaccccacactctgtggcaat 13
Score = 46.1 bits (23), Expect = 0.015
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 967 ttgggttagctgagtatgctgatggagaggcagataggactttcagaacca 1017
|||||||||| || || |||||||||||||| || || ||||||| |||||
Sbjct: 274 ttgggttagcagaataagctgatggagaggctgaaagaactttcaaaacca 224
>gb|BE528349.1|BE528349 M79G08STM Arabidopsis developing seed Arabidopsis thaliana cDNA clone
600037428R1 5', mRNA sequence
Length = 253
Score = 56.0 bits (28), Expect = 2e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1193 atcctcatcaaaatcaaccccacactctgtcgcaat 1228
||||||||| |||||||||||||||||||| |||||
Sbjct: 50 atcctcatcgaaatcaaccccacactctgtggcaat 15
>gb|AV822470.1|AV822470 AV822470 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-07-M20 5', mRNA
sequence
Length = 669
Score = 56.0 bits (28), Expect = 2e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1193 atcctcatcaaaatcaaccccacactctgtcgcaat 1228
||||||||| |||||||||||||||||||| |||||
Sbjct: 501 atcctcatcgaaatcaaccccacactctgtggcaat 466
>gb|AV829748.1|AV829748 AV829748 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-51-D03 5', mRNA
sequence
Length = 589
Score = 56.0 bits (28), Expect = 2e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1193 atcctcatcaaaatcaaccccacactctgtcgcaat 1228
||||||||| |||||||||||||||||||| |||||
Sbjct: 456 atcctcatcgaaatcaaccccacactctgtggcaat 421
>emb|BX832898.1|CNS0A0F3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL20ZC05 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1468
Score = 56.0 bits (28), Expect = 2e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1193 atcctcatcaaaatcaaccccacactctgtcgcaat 1228
||||||||| |||||||||||||||||||| |||||
Sbjct: 433 atcctcatcgaaatcaaccccacactctgtggcaat 398
Score = 54.0 bits (27), Expect = 6e-005
Identities = 105/131 (80%)
Strand = Plus / Minus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctttgtaaaagacaaacca 446
||||||||||| || || |||||||| ||||| ||||||||||| | || ||| || |
Sbjct: 1242 ctctcatactcattgtgtctgtaaggccgcaccggaatctgcttcgaaagagataatgta 1183
Query: 447 gtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaact 506
|| || || ||| | | || ||||| || |||||||| || |||||||||||||||||
Sbjct: 1182 gtgtagcctagcttttcatattcaaccttaaactggaatacaccgtagacatcaggaacc 1123
Query: 507 ttgaaggatgt 517
||||| |||||
Sbjct: 1122 ttgaaagatgt 1112
Score = 50.1 bits (25), Expect = 0.001
Identities = 139/177 (78%)
Strand = Plus / Minus
Query: 588 tgcacatcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaaca 647
|||||||| | ||||||||| |||| ||| || |||| ||||| ||||| ||||| |||
Sbjct: 1039 tgcacatcgttagcaacatacggctcccatctctttcctgaccactcatatatctctaca 980
Query: 648 gagtattccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttg 707
|| ||||||||||||| || || | || || |||| |||| || || |||||| |
Sbjct: 979 gaaaattccaggtcatcctttatcctatatatagctggctcatctgtttctccaacccta 920
Query: 708 tggtgcttaacattaacagccttaaggtgccccctctcatggaagacccatttgctt 764
||||| || |||| ||||||| || || ||||| || ||||||||||||||||||
Sbjct: 919 tggtgtacaagattaccagccttcagatggcccctttcgtggaagacccatttgctt 863
Score = 42.1 bits (21), Expect = 0.23
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 967 ttgggttagctgagtatgctgatggagaggcagataggact 1007
|||||||||| || || |||||||||||||| || ||||||
Sbjct: 659 ttgggttagcagaataagctgatggagaggctgaaaggact 619
>gb|AV783247.1|AV783247 AV783247 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-07-M20 3',
mRNA sequence
Length = 510
Score = 54.0 bits (27), Expect = 6e-005
Identities = 105/131 (80%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctttgtaaaagacaaacca 446
||||||||||| || || |||||||| ||||| ||||||||||| | || ||| || |
Sbjct: 287 ctctcatactcattgtgtctgtaaggccgcaccggaatctgcttcgaaagagataatgta 346
Query: 447 gtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaact 506
|| || || ||| | | || ||||| || |||||||| || |||||||||||||||||
Sbjct: 347 gtgtagcctagcttttcatattcaaccttaaactggaatacaccgtagacatcaggaacc 406
Query: 507 ttgaaggatgt 517
||||| |||||
Sbjct: 407 ttgaaagatgt 417
>gb|AV538812.1|AV538812 AV538812 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ121f09F 3', mRNA sequence
Length = 553
Score = 54.0 bits (27), Expect = 6e-005
Identities = 105/131 (80%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctttgtaaaagacaaacca 446
||||||||||| || || |||||||| ||||| ||||||||||| | || ||| || |
Sbjct: 352 ctctcatactcattgtgtctgtaaggccgcaccggaatctgcttcgaaagagataatgta 411
Query: 447 gtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaact 506
|| || || ||| | | || ||||| || |||||||| || |||||||||||||||||
Sbjct: 412 gtgtagcctagcttttcatattcaaccttaaactggaatacaccgtagacatcaggaacc 471
Query: 507 ttgaaggatgt 517
||||| |||||
Sbjct: 472 ttgaaagatgt 482
>gb|BP563274.1|BP563274 BP563274 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-01-J12 3',
mRNA sequence
Length = 432
Score = 54.0 bits (27), Expect = 6e-005
Identities = 105/131 (80%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctttgtaaaagacaaacca 446
||||||||||| || || |||||||| ||||| ||||||||||| | || ||| || |
Sbjct: 285 ctctcatactcattgtgtctgtaaggccgcaccggaatctgcttcgaaagagataatgta 344
Query: 447 gtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaact 506
|| || || ||| | | || ||||| || |||||||| || |||||||||||||||||
Sbjct: 345 gtgtagcctagcttttcatattcaaccttaaactggaatacaccgtagacatcaggaacc 404
Query: 507 ttgaaggatgt 517
||||| |||||
Sbjct: 405 ttgaaagatgt 415
>gb|BP570017.1|BP570017 BP570017 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-71-B22 3',
mRNA sequence
Length = 462
Score = 54.0 bits (27), Expect = 6e-005
Identities = 105/131 (80%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctttgtaaaagacaaacca 446
||||||||||| || || |||||||| ||||| ||||||||||| | || ||| || |
Sbjct: 289 ctctcatactcattgtgtctgtaaggccgcaccggaatctgcttcgaaagagataatgta 348
Query: 447 gtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaact 506
|| || || ||| | | || ||||| || |||||||| || |||||||||||||||||
Sbjct: 349 gtgtagcctagcttttcatattcaaccttaaactggaatacaccgtagacatcaggaacc 408
Query: 507 ttgaaggatgt 517
||||| |||||
Sbjct: 409 ttgaaagatgt 419
>gb|BP581925.1|BP581925 BP581925 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-33-P14 3',
mRNA sequence
Length = 450
Score = 54.0 bits (27), Expect = 6e-005
Identities = 105/131 (80%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctttgtaaaagacaaacca 446
||||||||||| || || |||||||| ||||| ||||||||||| | || ||| || |
Sbjct: 285 ctctcatactcattgtgtctgtaaggccgcaccggaatctgcttcgaaagagataatgta 344
Query: 447 gtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaact 506
|| || || ||| | | || ||||| || |||||||| || |||||||||||||||||
Sbjct: 345 gtgtagcctagcttttcatattcaaccttaaactggaatacaccgtagacatcaggaacc 404
Query: 507 ttgaaggatgt 517
||||| |||||
Sbjct: 405 ttgaaagatgt 415
>gb|BP587696.1|BP587696 BP587696 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-43-I23 3',
mRNA sequence
Length = 417
Score = 54.0 bits (27), Expect = 6e-005
Identities = 105/131 (80%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctttgtaaaagacaaacca 446
||||||||||| || || |||||||| ||||| ||||||||||| | || ||| || |
Sbjct: 285 ctctcatactcattgtgtctgtaaggccgcaccggaatctgcttcgaaagagataatgta 344
Query: 447 gtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaact 506
|| || || ||| | | || ||||| || |||||||| || |||||||||||||||||
Sbjct: 345 gtgtagcctagcttttcatattcaaccttaaactggaatacaccgtagacatcaggaacc 404
Query: 507 ttgaaggatgt 517
||||| |||||
Sbjct: 405 ttgaaagatgt 415
>gb|BP794192.1|BP794192 BP794192 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-59-H03 3',
mRNA sequence
Length = 426
Score = 54.0 bits (27), Expect = 6e-005
Identities = 105/131 (80%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctttgtaaaagacaaacca 446
||||||||||| || || |||||||| ||||| ||||||||||| | || ||| || |
Sbjct: 286 ctctcatactcattgtgtctgtaaggccgcaccggaatctgcttcgaaagagataatgta 345
Query: 447 gtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaact 506
|| || || ||| | | || ||||| || |||||||| || |||||||||||||||||
Sbjct: 346 gtgtagcctagcttttcatattcaaccttaaactggaatacaccgtagacatcaggaacc 405
Query: 507 ttgaaggatgt 517
||||| |||||
Sbjct: 406 ttgaaagatgt 416
>emb|AL089416.1|CNS00T9M Arabidopsis thaliana genome survey sequence SP6 end of BAC T3N23 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 497
Score = 52.0 bits (26), Expect = 2e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 1195 cctcatcaaaatcaaccccacactctgtcgcaat 1228
||||||| |||||||||||||||||||| |||||
Sbjct: 292 cctcatcgaaatcaaccccacactctgtggcaat 259
>gb|CL463944.1|CL463944 SAIL_1210_F08.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_1210_F08.v1, DNA sequence
Length = 932
Score = 52.0 bits (26), Expect = 2e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 468 tcaactttgaactggaaaactccgtagacatcaggaactttgaaggatgt 517
||||| || |||||||| || ||||||||||||||||| ||||| |||||
Sbjct: 440 tcaaccttaaactggaataccccgtagacatcaggaaccttgaaagatgt 391
>gb|AV791692.1|AV791692 AV791692 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-11-K08 3',
mRNA sequence
Length = 442
Score = 52.0 bits (26), Expect = 2e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 468 tcaactttgaactggaaaactccgtagacatcaggaactttgaaggatgt 517
||||| || |||||||| || ||||||||||||||||| ||||| |||||
Sbjct: 362 tcaaccttaaactggaatacaccgtagacatcaggaaccttgaaagatgt 411
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctt 430
||||||||||| || || |||||||| ||||| |||||||||||
Sbjct: 282 ctctcatactcattgtgtctgtaaggccgcaccggaatctgctt 325
>gb|AV813063.1|AV813063 AV813063 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-76-N15 3',
mRNA sequence
Length = 443
Score = 52.0 bits (26), Expect = 2e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 468 tcaactttgaactggaaaactccgtagacatcaggaactttgaaggatgt 517
||||| || |||||||| || ||||||||||||||||| ||||| |||||
Sbjct: 378 tcaaccttaaactggaatacaccgtagacatcaggaaccttgaaagatgt 427
>gb|BP583158.1|BP583158 BP583158 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-39-N04 3',
mRNA sequence
Length = 442
Score = 52.0 bits (26), Expect = 2e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 468 tcaactttgaactggaaaactccgtagacatcaggaactttgaaggatgt 517
||||| || |||||||| || ||||||||||||||||| ||||| |||||
Sbjct: 365 tcaaccttaaactggaatacaccgtagacatcaggaaccttgaaagatgt 414
>gb|BP585485.1|BP585485 BP585485 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-02-L08 3',
mRNA sequence
Length = 448
Score = 52.0 bits (26), Expect = 2e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 468 tcaactttgaactggaaaactccgtagacatcaggaactttgaaggatgt 517
||||| || |||||||| || ||||||||||||||||| ||||| |||||
Sbjct: 368 tcaaccttaaactggaatacaccgtagacatcaggaaccttgaaagatgt 417
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctt 430
||||||||||| || || |||||||| ||||| |||||||||||
Sbjct: 288 ctctcatactcattgtgtctgtaaggccgcaccggaatctgctt 331
>gb|BP589381.1|BP589381 BP589381 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-49-J18 3',
mRNA sequence
Length = 426
Score = 52.0 bits (26), Expect = 2e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 468 tcaactttgaactggaaaactccgtagacatcaggaactttgaaggatgt 517
||||| || |||||||| || ||||||||||||||||| ||||| |||||
Sbjct: 366 tcaaccttaaactggaatacaccgtagacatcaggaaccttgaaagatgt 415
>dbj|AB018119.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSN2
Length = 62927
Score = 52.0 bits (26), Expect = 2e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1195 cctcatcaaaatcaaccccacactctgtcgcaat 1228
||||||| |||||||||||||||||||| |||||
Sbjct: 25485 cctcatcgaaatcaaccccacactctgtggcaat 25518
Score = 52.0 bits (26), Expect = 2e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 468 tcaactttgaactggaaaactccgtagacatcaggaactttgaaggatgt 517
||||| || |||||||| || ||||||||||||||||| ||||| |||||
Sbjct: 23610 tcaaccttaaactggaatacaccgtagacatcaggaaccttgaaagatgt 23659
Score = 44.1 bits (22), Expect = 0.058
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 967 ttgggttagctgagtatgctgatggagaggcagataggactttcagaacc 1016
|||||||||| || || |||||||||||||| || || ||||||| ||||
Sbjct: 24881 ttgggttagcagaataagctgatggagaggctgaaagaactttcaaaacc 24930
Score = 44.1 bits (22), Expect = 0.058
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgc 428
||||||||||| || || |||||||| ||||| |||||||||
Sbjct: 23449 ctctcatactcattgtgtctgtaaggccgcaccggaatctgc 23490
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 52.0 bits (26), Expect = 2e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1195 cctcatcaaaatcaaccccacactctgtcgcaat 1228
||||||| |||||||||||||||||||| |||||
Sbjct: 23518153 cctcatcgaaatcaaccccacactctgtggcaat 23518186
Score = 52.0 bits (26), Expect = 2e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 468 tcaactttgaactggaaaactccgtagacatcaggaactttgaaggatgt 517
||||| || |||||||| || ||||||||||||||||| ||||| |||||
Sbjct: 23516278 tcaaccttaaactggaatacaccgtagacatcaggaaccttgaaagatgt 23516327
Score = 44.1 bits (22), Expect = 0.058
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 967 ttgggttagctgagtatgctgatggagaggcagataggactttcagaacc 1016
|||||||||| || || |||||||||||||| || || ||||||| ||||
Sbjct: 23517549 ttgggttagcagaataagctgatggagaggctgaaagaactttcaaaacc 23517598
Score = 44.1 bits (22), Expect = 0.058
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgc 428
||||||||||| || || |||||||| ||||| |||||||||
Sbjct: 23516117 ctctcatactcattgtgtctgtaaggccgcaccggaatctgc 23516158
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 52.0 bits (26), Expect = 2e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1195 cctcatcaaaatcaaccccacactctgtcgcaat 1228
||||||| |||||||||||||||||||| |||||
Sbjct: 26637306 cctcatcgaaatcaaccccacactctgtggcaat 26637339
Score = 52.0 bits (26), Expect = 2e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 468 tcaactttgaactggaaaactccgtagacatcaggaactttgaaggatgt 517
||||| || |||||||| || ||||||||||||||||| ||||| |||||
Sbjct: 26635431 tcaaccttaaactggaatacaccgtagacatcaggaaccttgaaagatgt 26635480
Score = 44.1 bits (22), Expect = 0.058
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 967 ttgggttagctgagtatgctgatggagaggcagataggactttcagaacc 1016
|||||||||| || || |||||||||||||| || || ||||||| ||||
Sbjct: 26636702 ttgggttagcagaataagctgatggagaggctgaaagaactttcaaaacc 26636751
Score = 44.1 bits (22), Expect = 0.058
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgc 428
||||||||||| || || |||||||| ||||| |||||||||
Sbjct: 26635270 ctctcatactcattgtgtctgtaaggccgcaccggaatctgc 26635311
>gb|BP588586.1|BP588586 BP588586 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-46-M15 3',
mRNA sequence
Length = 410
Score = 50.1 bits (25), Expect = 0.001
Identities = 100/125 (80%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctttgtaaaagacaaacca 446
||||||||||| || || |||||||| ||||| ||||||||||| | || ||| || |
Sbjct: 285 ctctcatactcattgtgtctgtaaggccgcaccggaatctgcttcgaaagagataatgta 344
Query: 447 gtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaact 506
|| || || ||| | | || ||||| || |||||||| || |||||||||||||||||
Sbjct: 345 gtgtagcctagcttttcatattcaaccttaaactggaatacaccgtagacatcaggaacc 404
Query: 507 ttgaa 511
|||||
Sbjct: 405 ttgaa 409
>gb|BP596827.1|BP596827 BP596827 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-36-P07 3',
mRNA sequence
Length = 412
Score = 50.1 bits (25), Expect = 0.001
Identities = 100/125 (80%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctttgtaaaagacaaacca 446
||||||||||| || || |||||||| ||||| ||||||||||| | || ||| || |
Sbjct: 285 ctctcatactcattgtgtctgtaaggccgcaccggaatctgcttcgaaagagataatgta 344
Query: 447 gtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaact 506
|| || || ||| | | || ||||| || |||||||| || |||||||||||||||||
Sbjct: 345 gtgtagcctagcttttcatattcaaccttaaactggaatacaccgtagacatcaggaacc 404
Query: 507 ttgaa 511
|||||
Sbjct: 405 ttgaa 409
>gb|BP597390.1|BP597390 BP597390 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-39-D14 3',
mRNA sequence
Length = 432
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 477 aactggaaaactccgtagacatcaggaactttgaaggatgt 517
|||||||| || ||||||||||||||||| ||||| |||||
Sbjct: 373 aactggaatacaccgtagacatcaggaaccttgaaagatgt 413
>gb|BP783581.1|BP783581 BP783581 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-87-D15 3',
mRNA sequence
Length = 414
Score = 50.1 bits (25), Expect = 0.001
Identities = 100/125 (80%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctttgtaaaagacaaacca 446
||||||||||| || || |||||||| ||||| ||||||||||| | || ||| || |
Sbjct: 287 ctctcatactcattgtgtctgtaaggccgcaccggaatctgcttcgaaagagataatgta 346
Query: 447 gtatatcccagcctctggtactcaactttgaactggaaaactccgtagacatcaggaact 506
|| || || ||| | | || ||||| || |||||||| || |||||||||||||||||
Sbjct: 347 gtgtagcctagcttttcatattcaaccttaaactggaatacaccgtagacatcaggaacc 406
Query: 507 ttgaa 511
|||||
Sbjct: 407 ttgaa 411
>gb|BP793887.1|BP793887 BP793887 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-58-B17 3',
mRNA sequence
Length = 422
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 477 aactggaaaactccgtagacatcaggaactttgaaggatgt 517
|||||||| || ||||||||||||||||| ||||| |||||
Sbjct: 377 aactggaatacaccgtagacatcaggaaccttgaaagatgt 417
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctt 430
||||||||||| || || |||||||| ||||| |||||||||||
Sbjct: 286 ctctcatactcattgtgtctgtaaggccgcaccggaatctgctt 329
>gb|AV792945.1|AV792945 AV792945 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-17-G23 3',
mRNA sequence
Length = 439
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctt 430
||||||||||| || || |||||||| ||||| |||||||||||
Sbjct: 286 ctctcatactcattgtgtctgtaaggccgcaccggaatctgctt 329
>gb|AV797929.1|AV797929 AV797929 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-14-F12 3',
mRNA sequence
Length = 407
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctt 430
||||||||||| || || |||||||| ||||| |||||||||||
Sbjct: 285 ctctcatactcattgtgtctgtaaggccgcaccggaatctgctt 328
>gb|AV809092.1|AV809092 AV809092 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-58-B15 3',
mRNA sequence
Length = 440
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctt 430
||||||||||| || || |||||||| ||||| |||||||||||
Sbjct: 288 ctctcatactcattgtgtctgtaaggccgcaccggaatctgctt 331
>gb|AV813637.1|AV813637 AV813637 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-79-F11 3',
mRNA sequence
Length = 405
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctt 430
||||||||||| || || |||||||| ||||| |||||||||||
Sbjct: 287 ctctcatactcattgtgtctgtaaggccgcaccggaatctgctt 330
>gb|AV440737.1|AV440737 AV440737 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APZ08b01_f 3', mRNA
sequence
Length = 256
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctt 430
||||||||||| || || |||||||| ||||| |||||||||||
Sbjct: 198 ctctcatactcattgtgtctgtaaggccgcaccggaatctgctt 241
>gb|BP566046.1|BP566046 BP566046 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-52-E23 3',
mRNA sequence
Length = 437
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctt 430
||||||||||| || || |||||||| ||||| |||||||||||
Sbjct: 285 ctctcatactcattgtgtctgtaaggccgcaccggaatctgctt 328
>gb|BP569638.1|BP569638 BP569638 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-68-F20 3',
mRNA sequence
Length = 453
Score = 48.1 bits (24), Expect = 0.004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 468 tcaactttgaactggaaaactccgtagacatcaggaactt 507
||||| || |||||||| || |||||||||||||||||||
Sbjct: 367 tcaaccttaaactggaatacaccgtagacatcaggaactt 406
Score = 42.1 bits (21), Expect = 0.23
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctg 427
||||||||||| || || |||||||| ||||| ||||||||
Sbjct: 286 ctctcatactcattgtgtctgtaaggccgcaccggaatctg 326
>gb|BP573855.1|BP573855 BP573855 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-85-N09 3',
mRNA sequence
Length = 400
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctt 430
||||||||||| || || |||||||| ||||| |||||||||||
Sbjct: 286 ctctcatactcattgtgtctgtaaggccgcaccggaatctgctt 329
>gb|BP579972.1|BP579972 BP579972 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-25-A10 3',
mRNA sequence
Length = 461
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctt 430
||||||||||| || || |||||||| ||||| |||||||||||
Sbjct: 287 ctctcatactcattgtgtctgtaaggccgcaccggaatctgctt 330
>gb|BP594644.1|BP594644 BP594644 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-26-L11 3',
mRNA sequence
Length = 452
Score = 48.1 bits (24), Expect = 0.004
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctt 430
||||||||||| || || |||||||||||||| |||||||||||
Sbjct: 285 ctctcatactcattgtgtctgtaagggcgcac-ggaatctgctt 327
>gb|BP597175.1|BP597175 BP597175 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-38-E13 3',
mRNA sequence
Length = 415
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctt 430
||||||||||| || || |||||||| ||||| |||||||||||
Sbjct: 342 ctctcatactcattgtgtctgtaaggccgcaccggaatctgctt 385
>gb|BP609163.1|BP609163 BP609163 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-81-C18 3',
mRNA sequence
Length = 399
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctt 430
||||||||||| || || |||||||| ||||| |||||||||||
Sbjct: 286 ctctcatactcattgtgtctgtaaggccgcaccggaatctgctt 329
>gb|BP614087.1|BP614087 BP614087 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-95-I11 3',
mRNA sequence
Length = 423
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 387 ctctcatactcgttatgcctgtaagggcgcactggaatctgctt 430
||||||||||| || || |||||||| ||||| |||||||||||
Sbjct: 285 ctctcatactcattgtgtctgtaaggccgcaccggaatctgctt 328
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 541,723
Number of Sequences: 1013581
Number of extensions: 541723
Number of successful extensions: 40015
Number of sequences better than 0.5: 65
Number of HSP's better than 0.5 without gapping: 64
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 39578
Number of HSP's gapped (non-prelim): 437
length of query: 1263
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1243
effective length of database: 888,669,252
effective search space: 1104615880236
effective search space used: 1104615880236
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)