BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.536
(819 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AA042137.1|AA042137 24474 CD4-13 Arabidopsis thaliana cD... 68 3e-009
gb|AI995261.1|AI995261 701503270 A. thaliana, Ohio State cl... 68 3e-009
gb|AV784363.1|AV784363 AV784363 RAFL5 Arabidopsis thaliana ... 68 3e-009
gb|AV823405.1|AV823405 AV823405 RAFL5 Arabidopsis thaliana ... 68 3e-009
gb|CB265133.1|CB265133 07-E014661-035-002-N02-T7R MPIZ-ADIS... 68 3e-009
gb|CF652487.1|CF652487 58-L020526w-066-003-D16-SP6P MPIZ-AD... 68 3e-009
gb|CK120324.1|CK120324 207m05.p1 AtM1 Arabidopsis thaliana ... 68 3e-009
gb|AY050769.1| Arabidopsis thaliana putative ribosomal prot... 68 3e-009
emb|BX821549.1|CNS0A8EE Arabidopsis thaliana Full-length cD... 68 3e-009
emb|BX820934.1|CNS0A8QP Arabidopsis thaliana Full-length cD... 68 3e-009
ref|NM_127531.2| Arabidopsis thaliana structural constituen... 68 3e-009
ref|NM_001036297.1| Arabidopsis thaliana structural constit... 68 3e-009
gb|BE529472.1|BE529472 M74D16STM Arabidopsis developing see... 62 2e-007
gb|CF652479.1|CF652479 58-L020167-066-001-D16-SP6P MPIZ-ADI... 62 2e-007
gb|BP842751.1|BP842751 BP842751 RAFL21 Arabidopsis thaliana... 62 2e-007
gb|BP860079.1|BP860079 BP860079 RAFL21 Arabidopsis thaliana... 62 2e-007
gb|BP863424.1|BP863424 BP863424 RAFL21 Arabidopsis thaliana... 62 2e-007
gb|AY079378.1| Arabidopsis thaliana putative ribosomal prot... 62 2e-007
emb|AX506227.1| Sequence 922 from Patent WO0216655 62 2e-007
gb|T22823.1|T22823 4831 Lambda-PRL2 Arabidopsis thaliana cD... 60 6e-007
gb|BE038429.1|BE038429 AA17D06 AA Arabidopsis thaliana cDNA... 58 2e-006
gb|CF652803.1|CF652803 77-L020578-066-004-I20-SP6P MPIZ-ADI... 58 2e-006
emb|AL092805.1|CNS00VVR Arabidopsis thaliana genome survey ... 56 1e-005
gb|AC005169.3| Arabidopsis thaliana chromosome 2 clone F6F2... 56 1e-005
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 56 1e-005
gb|BP796967.1|BP796967 BP796967 RAFL14 Arabidopsis thaliana... 52 2e-004
gb|H37001.1|H37001 15130 Lambda-PRL2 Arabidopsis thaliana c... 48 0.002
gb|T44307.1|T44307 7570 Lambda-PRL2 Arabidopsis thaliana cD... 48 0.002
gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone poo... 48 0.002
gb|AV550092.1|AV550092 AV550092 Arabidopsis thaliana roots ... 48 0.002
emb|AL092803.1|CNS00VVP Arabidopsis thaliana genome survey ... 46 0.009
gb|AV822896.1|AV822896 AV822896 RAFL5 Arabidopsis thaliana ... 46 0.009
gb|AV553363.1|AV553363 AV553363 Arabidopsis thaliana roots ... 46 0.009
gb|AV553570.1|AV553570 AV553570 Arabidopsis thaliana roots ... 46 0.009
gb|BP814878.1|BP814878 BP814878 RAFL19 Arabidopsis thaliana... 46 0.009
gb|BP855931.1|BP855931 BP855931 RAFL21 Arabidopsis thaliana... 46 0.009
emb|AL096692.1|F17A13 Arabidopsis thaliana clone F17A13, **... 46 0.009
gb|AY072328.1| Arabidopsis thaliana putative protein (At4g2... 46 0.009
gb|AY088304.1| Arabidopsis thaliana clone 5426 mRNA, comple... 46 0.009
emb|BX828625.1|CNS0A2F6 Arabidopsis thaliana Full-length cD... 46 0.009
emb|BX829363.1|CNS0A3JN Arabidopsis thaliana Full-length cD... 46 0.009
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 46 0.009
emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosom... 46 0.009
emb|AL161575.2|ATCHRIV71 Arabidopsis thaliana DNA chromosom... 46 0.009
ref|NM_119086.3| Arabidopsis thaliana structural constituen... 46 0.009
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 46 0.009
gb|AV819301.1|AV819301 AV819301 RAFL11 Arabidopsis thaliana... 44 0.038
gb|AV564522.1|AV564522 AV564522 Arabidopsis thaliana green ... 44 0.038
gb|BP564916.1|BP564916 BP564916 RAFL14 Arabidopsis thaliana... 44 0.038
gb|BP566283.1|BP566283 BP566283 RAFL14 Arabidopsis thaliana... 44 0.038
gb|BP597676.1|BP597676 BP597676 RAFL15 Arabidopsis thaliana... 44 0.038
gb|BP647538.1|BP647538 BP647538 RAFL19 Arabidopsis thaliana... 44 0.038
gb|BT000047.1| Arabidopsis thaliana putative protein (At4g2... 44 0.038
gb|CL481155.1|CL481155 SAIL_337_D01.v1 SAIL Collection Arab... 42 0.15
gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseud... 42 0.15
gb|AV534292.1|AV534292 AV534292 Arabidopsis thaliana flower... 42 0.15
>gb|AA042137.1|AA042137 24474 CD4-13 Arabidopsis thaliana cDNA clone E2H7T7, mRNA sequence
Length = 587
Score = 67.9 bits (34), Expect = 3e-009
Identities = 192/244 (78%), Gaps = 3/244 (1%)
Strand = Plus / Minus
Query: 491 tgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttccagcagctg 550
|||||||||||||||||||||| || | ||| || ||||| |||||| |||| ||
Sbjct: 263 tgttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggc-- 206
Query: 551 gctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgt 610
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 205 -ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttgg 147
Query: 611 agaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttca 670
||||||||| | ||||||| |||| || ||||| | || || | || ||||||||||
Sbjct: 146 tgaggttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttca 87
Query: 671 ccaggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgcca 730
||| ||| ||||||| ||| |||| |||| |||||||| | |||||||| |||||||
Sbjct: 86 ccaagaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgcca 27
Query: 731 tttc 734
||||
Sbjct: 26 tttc 23
>gb|AI995261.1|AI995261 701503270 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701503270, mRNA sequence
Length = 420
Score = 67.9 bits (34), Expect = 3e-009
Identities = 192/244 (78%), Gaps = 3/244 (1%)
Strand = Plus / Minus
Query: 491 tgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttccagcagctg 550
|||||||||||||||||||||| || | ||| || ||||| |||||| |||| ||
Sbjct: 285 tgttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggc-- 228
Query: 551 gctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgt 610
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 227 -ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttgg 169
Query: 611 agaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttca 670
||||||||| | ||||||| |||| || ||||| | || || | || ||||||||||
Sbjct: 168 tgaggttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttca 109
Query: 671 ccaggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgcca 730
||| ||| ||||||| ||| |||| |||| |||||||| | |||||||| |||||||
Sbjct: 108 ccaagaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgcca 49
Query: 731 tttc 734
||||
Sbjct: 48 tttc 45
>gb|AV784363.1|AV784363 AV784363 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-18-M20 3',
mRNA sequence
Length = 648
Score = 67.9 bits (34), Expect = 3e-009
Identities = 192/244 (78%), Gaps = 3/244 (1%)
Strand = Plus / Plus
Query: 491 tgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttccagcagctg 550
|||||||||||||||||||||| || | ||| || ||||| |||||| |||| ||
Sbjct: 335 tgttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggc-- 392
Query: 551 gctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgt 610
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 393 -ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttgg 451
Query: 611 agaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttca 670
||||||||| | ||||||| |||| || ||||| | || || | || ||||||||||
Sbjct: 452 tgaggttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttca 511
Query: 671 ccaggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgcca 730
||| ||| ||||||| ||| |||| |||| |||||||| | |||||||| |||||||
Sbjct: 512 ccaagaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgcca 571
Query: 731 tttc 734
||||
Sbjct: 572 tttc 575
>gb|AV823405.1|AV823405 AV823405 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-18-M20 5',
mRNA sequence
Length = 673
Score = 67.9 bits (34), Expect = 3e-009
Identities = 192/244 (78%), Gaps = 3/244 (1%)
Strand = Plus / Minus
Query: 491 tgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttccagcagctg 550
|||||||||||||||||||||| || | ||| || ||||| |||||| |||| ||
Sbjct: 298 tgttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggc-- 241
Query: 551 gctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgt 610
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 240 -ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttgg 182
Query: 611 agaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttca 670
||||||||| | ||||||| |||| || ||||| | || || | || ||||||||||
Sbjct: 181 tgaggttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttca 122
Query: 671 ccaggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgcca 730
||| ||| ||||||| ||| |||| |||| |||||||| | |||||||| |||||||
Sbjct: 121 ccaagaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgcca 62
Query: 731 tttc 734
||||
Sbjct: 61 tttc 58
>gb|CB265133.1|CB265133 07-E014661-035-002-N02-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA
clone MPIZp2000N022Q 5-PRIME, mRNA sequence
Length = 523
Score = 67.9 bits (34), Expect = 3e-009
Identities = 192/244 (78%), Gaps = 3/244 (1%)
Strand = Plus / Minus
Query: 491 tgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttccagcagctg 550
|||||||||||||||||||||| || | ||| || ||||| |||||| |||| ||
Sbjct: 292 tgttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggc-- 235
Query: 551 gctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgt 610
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 234 -ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttgg 176
Query: 611 agaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttca 670
||||||||| | ||||||| |||| || ||||| | || || | || ||||||||||
Sbjct: 175 tgaggttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttca 116
Query: 671 ccaggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgcca 730
||| ||| ||||||| ||| |||| |||| |||||||| | |||||||| |||||||
Sbjct: 115 ccaagaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgcca 56
Query: 731 tttc 734
||||
Sbjct: 55 tttc 52
>gb|CF652487.1|CF652487 58-L020526w-066-003-D16-SP6P MPIZ-ADIS-066 Arabidopsis thaliana
cDNA clone MPIZp2001D163Q 5-PRIME, mRNA sequence
Length = 661
Score = 67.9 bits (34), Expect = 3e-009
Identities = 192/244 (78%), Gaps = 3/244 (1%)
Strand = Plus / Minus
Query: 491 tgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttccagcagctg 550
|||||||||||||||||||||| || | ||| || ||||| |||||| |||| ||
Sbjct: 284 tgttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggc-- 227
Query: 551 gctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgt 610
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 226 -ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttgg 168
Query: 611 agaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttca 670
||||||||| | ||||||| |||| || ||||| | || || | || ||||||||||
Sbjct: 167 tgaggttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttca 108
Query: 671 ccaggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgcca 730
||| ||| ||||||| ||| |||| |||| |||||||| | |||||||| |||||||
Sbjct: 107 ccaagaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgcca 48
Query: 731 tttc 734
||||
Sbjct: 47 tttc 44
>gb|CK120324.1|CK120324 207m05.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011M05207
5-PRIME, mRNA sequence
Length = 623
Score = 67.9 bits (34), Expect = 3e-009
Identities = 192/244 (78%), Gaps = 3/244 (1%)
Strand = Plus / Minus
Query: 491 tgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttccagcagctg 550
|||||||||||||||||||||| || | ||| || ||||| |||||| |||| ||
Sbjct: 288 tgttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggc-- 231
Query: 551 gctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgt 610
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 230 -ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttgg 172
Query: 611 agaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttca 670
||||||||| | ||||||| |||| || ||||| | || || | || ||||||||||
Sbjct: 171 tgaggttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttca 112
Query: 671 ccaggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgcca 730
||| ||| ||||||| ||| |||| |||| |||||||| | |||||||| |||||||
Sbjct: 111 ccaagaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgcca 52
Query: 731 tttc 734
||||
Sbjct: 51 tttc 48
>gb|AY050769.1| Arabidopsis thaliana putative ribosomal protein L28 (At2g19730)
mRNA, complete cds
Length = 647
Score = 67.9 bits (34), Expect = 3e-009
Identities = 192/244 (78%), Gaps = 3/244 (1%)
Strand = Plus / Minus
Query: 491 tgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttccagcagctg 550
|||||||||||||||||||||| || | ||| || ||||| |||||| |||| ||
Sbjct: 297 tgttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggc-- 240
Query: 551 gctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgt 610
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 239 -ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttgg 181
Query: 611 agaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttca 670
||||||||| | ||||||| |||| || ||||| | || || | || ||||||||||
Sbjct: 180 tgaggttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttca 121
Query: 671 ccaggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgcca 730
||| ||| ||||||| ||| |||| |||| |||||||| | |||||||| |||||||
Sbjct: 120 ccaagaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgcca 61
Query: 731 tttc 734
||||
Sbjct: 60 tttc 57
>emb|BX821549.1|CNS0A8EE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL52ZB05 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 701
Score = 67.9 bits (34), Expect = 3e-009
Identities = 192/244 (78%), Gaps = 3/244 (1%)
Strand = Plus / Minus
Query: 491 tgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttccagcagctg 550
|||||||||||||||||||||| || | ||| || ||||| |||||| |||| ||
Sbjct: 285 tgttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggc-- 228
Query: 551 gctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgt 610
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 227 -ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttgg 169
Query: 611 agaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttca 670
||||||||| | ||||||| |||| || ||||| | || || | || ||||||||||
Sbjct: 168 tgaggttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttca 109
Query: 671 ccaggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgcca 730
||| ||| ||||||| ||| |||| |||| |||||||| | |||||||| |||||||
Sbjct: 108 ccaagaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgcca 49
Query: 731 tttc 734
||||
Sbjct: 48 tttc 45
>emb|BX820934.1|CNS0A8QP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH82ZG10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 695
Score = 67.9 bits (34), Expect = 3e-009
Identities = 192/244 (78%), Gaps = 3/244 (1%)
Strand = Plus / Minus
Query: 491 tgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttccagcagctg 550
|||||||||||||||||||||| || | ||| || ||||| |||||| |||| ||
Sbjct: 283 tgttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggc-- 226
Query: 551 gctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgt 610
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 225 -ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttgg 167
Query: 611 agaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttca 670
||||||||| | ||||||| |||| || ||||| | || || | || ||||||||||
Sbjct: 166 tgaggttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttca 107
Query: 671 ccaggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgcca 730
||| ||| ||||||| ||| |||| |||| |||||||| | |||||||| |||||||
Sbjct: 106 ccaagaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgcca 47
Query: 731 tttc 734
||||
Sbjct: 46 tttc 43
>ref|NM_127531.2| Arabidopsis thaliana structural constituent of ribosome AT2G19730
transcript variant AT2G19730.1 mRNA, complete cds
Length = 717
Score = 67.9 bits (34), Expect = 3e-009
Identities = 192/244 (78%), Gaps = 3/244 (1%)
Strand = Plus / Minus
Query: 491 tgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttccagcagctg 550
|||||||||||||||||||||| || | ||| || ||||| |||||| |||| ||
Sbjct: 297 tgttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggc-- 240
Query: 551 gctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgt 610
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 239 -ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttgg 181
Query: 611 agaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttca 670
||||||||| | ||||||| |||| || ||||| | || || | || ||||||||||
Sbjct: 180 tgaggttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttca 121
Query: 671 ccaggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgcca 730
||| ||| ||||||| ||| |||| |||| |||||||| | |||||||| |||||||
Sbjct: 120 ccaagaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgcca 61
Query: 731 tttc 734
||||
Sbjct: 60 tttc 57
>ref|NM_001036297.1| Arabidopsis thaliana structural constituent of ribosome AT2G19730
transcript variant AT2G19730.2 mRNA, complete cds
Length = 721
Score = 67.9 bits (34), Expect = 3e-009
Identities = 192/244 (78%), Gaps = 3/244 (1%)
Strand = Plus / Minus
Query: 491 tgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttccagcagctg 550
|||||||||||||||||||||| || | ||| || ||||| |||||| |||| ||
Sbjct: 301 tgttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggc-- 244
Query: 551 gctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgt 610
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 243 -ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttgg 185
Query: 611 agaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttca 670
||||||||| | ||||||| |||| || ||||| | || || | || ||||||||||
Sbjct: 184 tgaggttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttca 125
Query: 671 ccaggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgcca 730
||| ||| ||||||| ||| |||| |||| |||||||| | |||||||| |||||||
Sbjct: 124 ccaagaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgcca 65
Query: 731 tttc 734
||||
Sbjct: 64 tttc 61
>gb|BE529472.1|BE529472 M74D16STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600038758R1 5', mRNA sequence
Length = 236
Score = 61.9 bits (31), Expect = 2e-007
Identities = 145/183 (79%)
Strand = Plus / Minus
Query: 552 ctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgta 611
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 217 ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggt 158
Query: 612 gaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcac 671
||||||||| | ||||||| |||| || ||||| | || || | || |||||||||||
Sbjct: 157 gaggttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcac 98
Query: 672 caggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccat 731
|| ||| ||||||| ||| |||| |||| |||||||| | |||||||| ||||||||
Sbjct: 97 caagaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgccat 38
Query: 732 ttc 734
|||
Sbjct: 37 ttc 35
>gb|CF652479.1|CF652479 58-L020167-066-001-D16-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001D161Q 5-PRIME, mRNA sequence
Length = 689
Score = 61.9 bits (31), Expect = 2e-007
Identities = 145/183 (79%)
Strand = Plus / Minus
Query: 552 ctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgta 611
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 227 ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggt 168
Query: 612 gaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcac 671
||||||||| | ||||||| |||| || ||||| | || || | || |||||||||||
Sbjct: 167 gaggttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcac 108
Query: 672 caggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccat 731
|| ||| ||||||| ||| |||| |||| |||||||| | |||||||| ||||||||
Sbjct: 107 caagaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgccat 48
Query: 732 ttc 734
|||
Sbjct: 47 ttc 45
>gb|BP842751.1|BP842751 BP842751 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-55-N20 5',
mRNA sequence
Length = 380
Score = 61.9 bits (31), Expect = 2e-007
Identities = 145/183 (79%)
Strand = Plus / Minus
Query: 552 ctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgta 611
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 243 ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggt 184
Query: 612 gaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcac 671
||||||||| | ||||||| |||| || ||||| | || || | || |||||||||||
Sbjct: 183 gaggttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcac 124
Query: 672 caggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccat 731
|| ||| ||||||| ||| |||| |||| |||||||| | |||||||| ||||||||
Sbjct: 123 caagaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgccat 64
Query: 732 ttc 734
|||
Sbjct: 63 ttc 61
Score = 44.1 bits (22), Expect = 0.038
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 491 tgttctgcttcttggtcttggt 512
||||||||||||||||||||||
Sbjct: 299 tgttctgcttcttggtcttggt 278
>gb|BP860079.1|BP860079 BP860079 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-42-P20 5',
mRNA sequence
Length = 395
Score = 61.9 bits (31), Expect = 2e-007
Identities = 145/183 (79%)
Strand = Plus / Minus
Query: 552 ctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgta 611
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 234 ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttgct 175
Query: 612 gaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcac 671
||||||||| | ||||||| |||| || ||||| | || || | || |||||||||||
Sbjct: 174 gaggttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcac 115
Query: 672 caggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccat 731
|| ||| ||||||| ||| |||| |||| |||||||| | |||||||| ||||||||
Sbjct: 114 caagaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgccat 55
Query: 732 ttc 734
|||
Sbjct: 54 ttc 52
>gb|BP863424.1|BP863424 BP863424 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-66-K15 5',
mRNA sequence
Length = 412
Score = 61.9 bits (31), Expect = 2e-007
Identities = 145/183 (79%)
Strand = Plus / Minus
Query: 552 ctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgta 611
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 239 ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggt 180
Query: 612 gaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcac 671
||||||||| | ||||||| |||| || ||||| | || || | || |||||||||||
Sbjct: 179 gaggttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttcac 120
Query: 672 caggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccat 731
|| ||| ||||||| ||| |||| |||| |||||||| | |||||||| ||||||||
Sbjct: 119 caagaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgccat 60
Query: 732 ttc 734
|||
Sbjct: 59 ttc 57
Score = 44.1 bits (22), Expect = 0.038
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 491 tgttctgcttcttggtcttggt 512
||||||||||||||||||||||
Sbjct: 299 tgttctgcttcttggtcttggt 278
>gb|AY079378.1| Arabidopsis thaliana putative ribosomal protein L28 (At2g19730)
mRNA, complete cds
Length = 463
Score = 61.9 bits (31), Expect = 2e-007
Identities = 189/241 (78%), Gaps = 3/241 (1%)
Strand = Plus / Minus
Query: 491 tgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttccagcagctg 550
|||||||||||||||||||||| || | ||| || ||||| |||||| |||| ||
Sbjct: 238 tgttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggc-- 181
Query: 551 gctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgt 610
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 180 -ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttgg 122
Query: 611 agaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttca 670
||||||||| | ||||||| |||| || ||||| | || || | || ||||||||||
Sbjct: 121 tgaggttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttca 62
Query: 671 ccaggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgcca 730
||| ||| ||||||| ||| |||| |||| |||||||| | |||||||| |||||||
Sbjct: 61 ccaagaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgcca 2
Query: 731 t 731
|
Sbjct: 1 t 1
>emb|AX506227.1| Sequence 922 from Patent WO0216655
Length = 432
Score = 61.9 bits (31), Expect = 2e-007
Identities = 189/241 (78%), Gaps = 3/241 (1%)
Strand = Plus / Minus
Query: 491 tgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttccagcagctg 550
|||||||||||||||||||||| || | ||| || ||||| |||||| |||| ||
Sbjct: 238 tgttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggc-- 181
Query: 551 gctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgt 610
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 180 -ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttgg 122
Query: 611 agaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttca 670
||||||||| | ||||||| |||| || ||||| | || || | || ||||||||||
Sbjct: 121 tgaggttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttca 62
Query: 671 ccaggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgcca 730
||| ||| ||||||| ||| |||| |||| |||||||| | |||||||| |||||||
Sbjct: 61 ccaagaaacagttgttgttcttcacgatctcccagatcaattgtcctggaactgtcgcca 2
Query: 731 t 731
|
Sbjct: 1 t 1
>gb|T22823.1|T22823 4831 Lambda-PRL2 Arabidopsis thaliana cDNA clone 107I10T7, mRNA
sequence
Length = 489
Score = 60.0 bits (30), Expect = 6e-007
Identities = 190/244 (77%), Gaps = 3/244 (1%)
Strand = Plus / Minus
Query: 491 tgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttccagcagctg 550
|||||||||||||||||||||| || ||| || ||||| |||||| |||| ||
Sbjct: 272 tgttctgcttcttggtcttggtggtgncgagnacaacagcttggtccttgtcagcggc-- 215
Query: 551 gctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgt 610
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 214 -ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttgg 156
Query: 611 agaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttca 670
||||||||| | ||||||| |||| || ||||| | || || | || ||||||||||
Sbjct: 155 tgaggttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttca 96
Query: 671 ccaggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgcca 730
||| ||| ||||||| ||| | || |||| |||||||| | |||||||| |||||||
Sbjct: 95 ccaagaaanagttgttgttcttnacgatctcccagatcaattgtcctggaactgtcgcca 36
Query: 731 tttc 734
||||
Sbjct: 35 tttc 32
>gb|BE038429.1|BE038429 AA17D06 AA Arabidopsis thaliana cDNA 5' similar to ribosomal
protein l28, mRNA sequence
Length = 699
Score = 58.0 bits (29), Expect = 2e-006
Identities = 172/219 (78%), Gaps = 3/219 (1%)
Strand = Plus / Minus
Query: 491 tgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttccagcagctg 550
|||||||||||||||||||||| || | ||| || ||||| |||||| |||| ||
Sbjct: 243 tgttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggc-- 186
Query: 551 gctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgt 610
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 185 -ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttgg 127
Query: 611 agaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttca 670
||||||||| | ||||||| |||| || ||||| | || || | || ||||||||||
Sbjct: 126 tgaggttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttca 67
Query: 671 ccaggaaggagttgttcttcctcacaatctgccagatca 709
||| ||| ||||||| ||| |||| |||| ||||||||
Sbjct: 66 ccaagaaacagttgttgttcttcacgatctcccagatca 28
>gb|CF652803.1|CF652803 77-L020578-066-004-I20-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001I204Q 5-PRIME, mRNA sequence
Length = 616
Score = 58.0 bits (29), Expect = 2e-006
Identities = 172/219 (78%), Gaps = 3/219 (1%)
Strand = Plus / Minus
Query: 491 tgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttccagcagctg 550
|||||||||||||||||||||| || | ||| || ||||| |||||| |||| ||
Sbjct: 218 tgttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggc-- 161
Query: 551 gctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgt 610
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 160 -ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttgg 102
Query: 611 agaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttca 670
||||||||| | ||||||| |||| || ||||| | || || | || ||||||||||
Sbjct: 101 tgaggttgttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttca 42
Query: 671 ccaggaaggagttgttcttcctcacaatctgccagatca 709
||| ||| ||||||| ||| |||| |||| ||||||||
Sbjct: 41 ccaagaaacagttgttgttcttcacgatctcccagatca 3
>emb|AL092805.1|CNS00VVR Arabidopsis thaliana genome survey sequence SP6 end of BAC T10J14
of TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 517
Score = 56.0 bits (28), Expect = 1e-005
Identities = 121/152 (79%)
Strand = Plus / Plus
Query: 583 ccagagtacttgtaggagtgtacattgtagaggttgttgggctccttggtgaactgcacc 642
||||||| |||||| ||||| || ||| ||||||||| | ||||||| |||| || |||
Sbjct: 262 ccagagtgcttgtaagagtgaacgttggtgaggttgttagtctccttgctgaattgaacc 321
Query: 643 ttggcattgccgttgccaaactgcttcaccaggaaggagttgttcttcctcacaatctgc 702
|| | || || | || ||||||||||||| ||| ||||||| ||| |||| |||| |
Sbjct: 322 ttagagtttcctctaccgaactgcttcaccaagaaacagttgttgttcttcacgatctcc 381
Query: 703 cagatcagatcccctggaacggtcgccatttc 734
||||||| | |||||||| |||||||||||
Sbjct: 382 cagatcaattgtcctggaactgtcgccatttc 413
>gb|AC005169.3| Arabidopsis thaliana chromosome 2 clone F6F22 map mi148, complete
sequence
Length = 126386
Score = 56.0 bits (28), Expect = 1e-005
Identities = 121/152 (79%)
Strand = Plus / Plus
Query: 583 ccagagtacttgtaggagtgtacattgtagaggttgttgggctccttggtgaactgcacc 642
||||||| |||||| ||||| || ||| ||||||||| | ||||||| |||| || |||
Sbjct: 111495 ccagagtgcttgtaagagtgaacgttggtgaggttgttagtctccttgctgaattgaacc 111554
Query: 643 ttggcattgccgttgccaaactgcttcaccaggaaggagttgttcttcctcacaatctgc 702
|| | || || | || ||||||||||||| ||| ||||||| ||| |||| |||| |
Sbjct: 111555 ttagagtttcctctaccgaactgcttcaccaagaaacagttgttgttcttcacgatctcc 111614
Query: 703 cagatcagatcccctggaacggtcgccatttc 734
||||||| | |||||||| |||||||||||
Sbjct: 111615 cagatcaattgtcctggaactgtcgccatttc 111646
Score = 44.1 bits (22), Expect = 0.038
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 491 tgttctgcttcttggtcttggt 512
||||||||||||||||||||||
Sbjct: 110936 tgttctgcttcttggtcttggt 110957
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 56.0 bits (28), Expect = 1e-005
Identities = 121/152 (79%)
Strand = Plus / Minus
Query: 583 ccagagtacttgtaggagtgtacattgtagaggttgttgggctccttggtgaactgcacc 642
||||||| |||||| ||||| || ||| ||||||||| | ||||||| |||| || |||
Sbjct: 8518982 ccagagtgcttgtaagagtgaacgttggtgaggttgttagtctccttgctgaattgaacc 8518923
Query: 643 ttggcattgccgttgccaaactgcttcaccaggaaggagttgttcttcctcacaatctgc 702
|| | || || | || ||||||||||||| ||| ||||||| ||| |||| |||| |
Sbjct: 8518922 ttagagtttcctctaccgaactgcttcaccaagaaacagttgttgttcttcacgatctcc 8518863
Query: 703 cagatcagatcccctggaacggtcgccatttc 734
||||||| | |||||||| |||||||||||
Sbjct: 8518862 cagatcaattgtcctggaactgtcgccatttc 8518831
Score = 44.1 bits (22), Expect = 0.038
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 491 tgttctgcttcttggtcttggt 512
||||||||||||||||||||||
Sbjct: 8519541 tgttctgcttcttggtcttggt 8519520
>gb|BP796967.1|BP796967 BP796967 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-01-J10 5',
mRNA sequence
Length = 391
Score = 52.0 bits (26), Expect = 2e-004
Identities = 190/244 (77%), Gaps = 3/244 (1%)
Strand = Plus / Minus
Query: 491 tgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttccagcagctg 550
|||||||||||||||||||||| || | ||| || ||||| |||||| |||| ||
Sbjct: 296 tgttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggc-- 239
Query: 551 gctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgt 610
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 238 -ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttgg 180
Query: 611 agaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttca 670
|||||| || | ||||||| |||| || ||||| | || || | || ||||||||||
Sbjct: 179 tgaggtttttagtctccttgctgaattgaaccttagagtttcctctaccgaactgcttca 120
Query: 671 ccaggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgcca 730
||| ||| ||||||| ||| |||| |||| ||| |||| | |||||||| |||||||
Sbjct: 119 ccaagaaacagttgttgttcttcacgatctcccaaatcaattgtcctggaactgtcgcca 60
Query: 731 tttc 734
||||
Sbjct: 59 tttc 56
>gb|H37001.1|H37001 15130 Lambda-PRL2 Arabidopsis thaliana cDNA clone 181H5T7, mRNA
sequence
Length = 355
Score = 48.1 bits (24), Expect = 0.002
Identities = 142/182 (78%)
Strand = Plus / Minus
Query: 552 ctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgta 611
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 227 ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggt 168
Query: 612 gaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcac 671
||||||||| | | ||||| |||| || ||||| | || || | || |||||||||||
Sbjct: 167 gaggttgttagtcnccttgctgaattgaaccttagagtttcctctaccgaactgcttcac 108
Query: 672 caggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccat 731
|| ||| ||||||| ||| | || |||| |||||||| | |||||||| ||||||||
Sbjct: 107 caagaaacagttgttgttcttnacgatctcccagatcaattgtcctggaactgtcgccat 48
Query: 732 tt 733
||
Sbjct: 47 tt 46
>gb|T44307.1|T44307 7570 Lambda-PRL2 Arabidopsis thaliana cDNA clone 123O19T7, mRNA
sequence
Length = 406
Score = 48.1 bits (24), Expect = 0.002
Identities = 142/182 (78%)
Strand = Plus / Minus
Query: 552 ctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgta 611
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 228 ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggt 169
Query: 612 gaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcac 671
||||||||| | | ||||| |||| || ||||| | || || | || |||||||||||
Sbjct: 168 gaggttgttagtcnccttgctgaattgaaccttagagtttcctctaccgaactgcttcac 109
Query: 672 caggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccat 731
|| ||| ||||||| ||| | || |||| |||||||| | |||||||| ||||||||
Sbjct: 108 caagaaacagttgttgttcttnacgatctcccagatcaattgtcctggaactgtcgccat 49
Query: 732 tt 733
||
Sbjct: 48 tt 47
>gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH10 similar to putative protein, mRNA
sequence
Length = 305
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 796 ccgcgtacctgcccgggcggccgc 819
||||||||||||||||||||||||
Sbjct: 274 ccgcgtacctgcccgggcggccgc 297
>gb|AV550092.1|AV550092 AV550092 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ108b04R 5', mRNA sequence
Length = 422
Score = 48.1 bits (24), Expect = 0.002
Identities = 122/154 (79%), Gaps = 3/154 (1%)
Strand = Plus / Minus
Query: 491 tgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttccagcagctg 550
|||||||||||||||||||||| || | ||| || ||||| |||||| |||| ||
Sbjct: 200 tgttctgcttcttggtcttggtggtggcgagcacaacagcttggtccttgtcagcggc-- 143
Query: 551 gctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtacattgt 610
|||||| || ||||| || |||||||| | ||||||| |||||| ||||| || |||
Sbjct: 142 -ctggatggtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttgg 84
Query: 611 agaggttgttgggctccttggtgaactgcacctt 644
||||||||| | ||||||| |||| || |||||
Sbjct: 83 tgaggttgttagtctccttgctgaattgaacctt 50
>emb|AL092803.1|CNS00VVP Arabidopsis thaliana genome survey sequence SP6 end of BAC T10J13
of TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 394
Score = 46.1 bits (23), Expect = 0.009
Identities = 101/127 (79%)
Strand = Plus / Plus
Query: 583 ccagagtacttgtaggagtgtacattgtagaggttgttgggctccttggtgaactgcacc 642
||||||| |||||| ||||| || ||| ||||||||| | ||||||| |||| || |||
Sbjct: 262 ccagagtgcttgtaagagtgaacgttggtgaggttgttagtctccttgctgaattgaacc 321
Query: 643 ttggcattgccgttgccaaactgcttcaccaggaaggagttgttcttcctcacaatctgc 702
|| | || || | || ||||||||||||| ||| ||||||| ||| |||| |||| |
Sbjct: 322 ttagagtttcctctaccgaactgcttcaccaagaaacagttgttgttcttcacgatctcc 381
Query: 703 cagatca 709
|||||||
Sbjct: 382 cagatca 388
>gb|AV822896.1|AV822896 AV822896 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-12-O17 5',
mRNA sequence
Length = 676
Score = 46.1 bits (23), Expect = 0.009
Identities = 98/123 (79%)
Strand = Plus / Minus
Query: 612 gaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcac 671
|||||||||| ||| ||| ||||||| ||||||||||| || | || || ||||||||
Sbjct: 198 gaggttgttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 139
Query: 672 caggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccat 731
|| ||| ||||||| || |||| |||| |||||||| | |||||||| || |||||
Sbjct: 138 caagaaacagttgtttctcttcacgatctcccagatcaactgtcctggaactgtggccat 79
Query: 732 ttc 734
|||
Sbjct: 78 ttc 76
>gb|AV553363.1|AV553363 AV553363 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ60g08R 5', mRNA sequence
Length = 548
Score = 46.1 bits (23), Expect = 0.009
Identities = 98/123 (79%)
Strand = Plus / Minus
Query: 612 gaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcac 671
|||||||||| ||| ||| ||||||| ||||||||||| || | || || ||||||||
Sbjct: 165 gaggttgttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 106
Query: 672 caggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccat 731
|| ||| ||||||| || |||| |||| |||||||| | |||||||| || |||||
Sbjct: 105 caagaaacagttgtttctcttcacgatctcccagatcaactgtcctggaactgtggccat 46
Query: 732 ttc 734
|||
Sbjct: 45 ttc 43
>gb|AV553570.1|AV553570 AV553570 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ66c10R 5', mRNA sequence
Length = 505
Score = 46.1 bits (23), Expect = 0.009
Identities = 98/123 (79%)
Strand = Plus / Minus
Query: 612 gaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcac 671
|||||||||| ||| ||| ||||||| ||||||||||| || | || || ||||||||
Sbjct: 178 gaggttgttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 119
Query: 672 caggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccat 731
|| ||| ||||||| || |||| |||| |||||||| | |||||||| || |||||
Sbjct: 118 caagaaacagttgtttctcttcacgatctcccagatcaactgtcctggaactgtggccat 59
Query: 732 ttc 734
|||
Sbjct: 58 ttc 56
>gb|BP814878.1|BP814878 BP814878 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-37-C10 5',
mRNA sequence
Length = 391
Score = 46.1 bits (23), Expect = 0.009
Identities = 98/123 (79%)
Strand = Plus / Minus
Query: 612 gaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcac 671
|||||||||| ||| ||| ||||||| ||||||||||| || | || || ||||||||
Sbjct: 229 gaggttgttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 170
Query: 672 caggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccat 731
|| ||| ||||||| || |||| |||| |||||||| | |||||||| || |||||
Sbjct: 169 caagaaacagttgtttctcttcacgatctcccagatcaactgtcctggaactgtggccat 110
Query: 732 ttc 734
|||
Sbjct: 109 ttc 107
>gb|BP855931.1|BP855931 BP855931 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-28-E24 5',
mRNA sequence
Length = 410
Score = 46.1 bits (23), Expect = 0.009
Identities = 98/123 (79%)
Strand = Plus / Minus
Query: 612 gaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcac 671
|||||||||| ||| ||| ||||||| ||||||||||| || | || || ||||||||
Sbjct: 161 gaggttgttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 102
Query: 672 caggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccat 731
|| ||| ||||||| || |||| |||| |||||||| | |||||||| || |||||
Sbjct: 101 caagaaacagttgtttctcttcacgatctcccagatcaactgtcctggaactgtggccat 42
Query: 732 ttc 734
|||
Sbjct: 41 ttc 39
>emb|AL096692.1|F17A13 Arabidopsis thaliana clone F17A13, *** SEQUENCING IN PROGRESS ***
Length = 100310
Score = 46.1 bits (23), Expect = 0.009
Identities = 98/123 (79%)
Strand = Plus / Plus
Query: 612 gaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcac 671
|||||||||| ||| ||| ||||||| ||||||||||| || | || || ||||||||
Sbjct: 79886 gaggttgttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 79945
Query: 672 caggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccat 731
|| ||| ||||||| || |||| |||| |||||||| | |||||||| || |||||
Sbjct: 79946 caagaaacagttgtttctcttcacgatctcccagatcaactgtcctggaactgtggccat 80005
Query: 732 ttc 734
|||
Sbjct: 80006 ttc 80008
>gb|AY072328.1| Arabidopsis thaliana putative protein (At4g29410) mRNA, complete
cds
Length = 660
Score = 46.1 bits (23), Expect = 0.009
Identities = 98/123 (79%)
Strand = Plus / Minus
Query: 612 gaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcac 671
|||||||||| ||| ||| ||||||| ||||||||||| || | || || ||||||||
Sbjct: 197 gaggttgttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 138
Query: 672 caggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccat 731
|| ||| ||||||| || |||| |||| |||||||| | |||||||| || |||||
Sbjct: 137 caagaaacagttgtttctcttcacgatctcccagatcaactgtcctggaactgtggccat 78
Query: 732 ttc 734
|||
Sbjct: 77 ttc 75
>gb|AY088304.1| Arabidopsis thaliana clone 5426 mRNA, complete sequence
Length = 665
Score = 46.1 bits (23), Expect = 0.009
Identities = 98/123 (79%)
Strand = Plus / Minus
Query: 612 gaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcac 671
|||||||||| ||| ||| ||||||| ||||||||||| || | || || ||||||||
Sbjct: 202 gaggttgttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 143
Query: 672 caggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccat 731
|| ||| ||||||| || |||| |||| |||||||| | |||||||| || |||||
Sbjct: 142 caagaaacagttgtttctcttcacgatctcccagatcaactgtcctggaactgtggccat 83
Query: 732 ttc 734
|||
Sbjct: 82 ttc 80
>emb|BX828625.1|CNS0A2F6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL22ZH11 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 691
Score = 46.1 bits (23), Expect = 0.009
Identities = 98/123 (79%)
Strand = Plus / Minus
Query: 612 gaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcac 671
|||||||||| ||| ||| ||||||| ||||||||||| || | || || ||||||||
Sbjct: 184 gaggttgttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 125
Query: 672 caggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccat 731
|| ||| ||||||| || |||| |||| |||||||| | |||||||| || |||||
Sbjct: 124 caagaaacagttgtttctcttcacgatctcccagatcaactgtcctggaactgtggccat 65
Query: 732 ttc 734
|||
Sbjct: 64 ttc 62
>emb|BX829363.1|CNS0A3JN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL95ZC06 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 675
Score = 46.1 bits (23), Expect = 0.009
Identities = 98/123 (79%)
Strand = Plus / Minus
Query: 612 gaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcac 671
|||||||||| ||| ||| ||||||| ||||||||||| || | || || ||||||||
Sbjct: 187 gaggttgttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 128
Query: 672 caggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccat 731
|| ||| ||||||| || |||| |||| |||||||| | |||||||| || |||||
Sbjct: 127 caagaaacagttgtttctcttcacgatctcccagatcaactgtcctggaactgtggccat 68
Query: 732 ttc 734
|||
Sbjct: 67 ttc 65
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 46.1 bits (23), Expect = 0.009
Identities = 98/123 (79%)
Strand = Plus / Plus
Query: 612 gaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcac 671
|||||||||| ||| ||| ||||||| ||||||||||| || | || || ||||||||
Sbjct: 10382621 gaggttgttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 10382680
Query: 672 caggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccat 731
|| ||| ||||||| || |||| |||| |||||||| | |||||||| || |||||
Sbjct: 10382681 caagaaacagttgtttctcttcacgatctcccagatcaactgtcctggaactgtggccat 10382740
Query: 732 ttc 734
|||
Sbjct: 10382741 ttc 10382743
>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70
Length = 198429
Score = 46.1 bits (23), Expect = 0.009
Identities = 98/123 (79%)
Strand = Plus / Plus
Query: 612 gaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcac 671
|||||||||| ||| ||| ||||||| ||||||||||| || | || || ||||||||
Sbjct: 197925 gaggttgttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 197984
Query: 672 caggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccat 731
|| ||| ||||||| || |||| |||| |||||||| | |||||||| || |||||
Sbjct: 197985 caagaaacagttgtttctcttcacgatctcccagatcaactgtcctggaactgtggccat 198044
Query: 732 ttc 734
|||
Sbjct: 198045 ttc 198047
>emb|AL161575.2|ATCHRIV71 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 71
Length = 200001
Score = 46.1 bits (23), Expect = 0.009
Identities = 98/123 (79%)
Strand = Plus / Plus
Query: 612 gaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcac 671
|||||||||| ||| ||| ||||||| ||||||||||| || | || || ||||||||
Sbjct: 4496 gaggttgttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 4555
Query: 672 caggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccat 731
|| ||| ||||||| || |||| |||| |||||||| | |||||||| || |||||
Sbjct: 4556 caagaaacagttgtttctcttcacgatctcccagatcaactgtcctggaactgtggccat 4615
Query: 732 ttc 734
|||
Sbjct: 4616 ttc 4618
>ref|NM_119086.3| Arabidopsis thaliana structural constituent of ribosome AT4G29410
mRNA, complete cds
Length = 709
Score = 46.1 bits (23), Expect = 0.009
Identities = 98/123 (79%)
Strand = Plus / Minus
Query: 612 gaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcac 671
|||||||||| ||| ||| ||||||| ||||||||||| || | || || ||||||||
Sbjct: 202 gaggttgttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 143
Query: 672 caggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccat 731
|| ||| ||||||| || |||| |||| |||||||| | |||||||| || |||||
Sbjct: 142 caagaaacagttgtttctcttcacgatctcccagatcaactgtcctggaactgtggccat 83
Query: 732 ttc 734
|||
Sbjct: 82 ttc 80
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 46.1 bits (23), Expect = 0.009
Identities = 98/123 (79%)
Strand = Plus / Plus
Query: 612 gaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcac 671
|||||||||| ||| ||| ||||||| ||||||||||| || | || || ||||||||
Sbjct: 14469851 gaggttgttgctctctttgctgaactgaaccttggcattacctctaccgaattgcttcac 14469910
Query: 672 caggaaggagttgttcttcctcacaatctgccagatcagatcccctggaacggtcgccat 731
|| ||| ||||||| || |||| |||| |||||||| | |||||||| || |||||
Sbjct: 14469911 caagaaacagttgtttctcttcacgatctcccagatcaactgtcctggaactgtggccat 14469970
Query: 732 ttc 734
|||
Sbjct: 14469971 ttc 14469973
>gb|AV819301.1|AV819301 AV819301 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-03-J09 3',
mRNA sequence
Length = 421
Score = 44.1 bits (22), Expect = 0.038
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 491 tgttctgcttcttggtcttggt 512
||||||||||||||||||||||
Sbjct: 340 tgttctgcttcttggtcttggt 361
>gb|AV564522.1|AV564522 AV564522 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ205g07F 3', mRNA sequence
Length = 387
Score = 44.1 bits (22), Expect = 0.038
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 491 tgttctgcttcttggtcttggt 512
||||||||||||||||||||||
Sbjct: 337 tgttctgcttcttggtcttggt 358
>gb|BP564916.1|BP564916 BP564916 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-09-P11 3',
mRNA sequence
Length = 436
Score = 44.1 bits (22), Expect = 0.038
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 491 tgttctgcttcttggtcttggt 512
||||||||||||||||||||||
Sbjct: 410 tgttctgcttcttggtcttggt 431
>gb|BP566283.1|BP566283 BP566283 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-53-D19 3',
mRNA sequence
Length = 438
Score = 44.1 bits (22), Expect = 0.038
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 491 tgttctgcttcttggtcttggt 512
||||||||||||||||||||||
Sbjct: 408 tgttctgcttcttggtcttggt 429
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 477,921
Number of Sequences: 1013581
Number of extensions: 477921
Number of successful extensions: 31098
Number of sequences better than 0.5: 56
Number of HSP's better than 0.5 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30536
Number of HSP's gapped (non-prelim): 562
length of query: 819
length of database: 908,940,872
effective HSP length: 20
effective length of query: 799
effective length of database: 888,669,252
effective search space: 710046732348
effective search space used: 710046732348
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)