BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.160
(878 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV781800.1|AV781800 AV781800 RAFL4 Arabidopsis thaliana ... 88 3e-015
gb|AV821375.1|AV821375 AV821375 RAFL4 Arabidopsis thaliana ... 88 3e-015
gb|AF378885.1|AF378885 Arabidopsis thaliana AT5g08180/T22D6... 88 3e-015
gb|AY050477.1| Arabidopsis thaliana AT5g08180/T22D6_120 mRN... 88 3e-015
ref|NM_120901.2| Arabidopsis thaliana RNA binding / structu... 88 3e-015
gb|BU634909.1|BU634909 012F05 Infected Arabidopsis Leaf Ara... 80 7e-013
gb|BP624009.1|BP624009 BP624009 RAFL17 Arabidopsis thaliana... 78 3e-012
gb|AV554586.1|AV554586 AV554586 Arabidopsis thaliana roots ... 72 2e-010
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 68 3e-009
emb|AL357612.1|ATT22D6 Arabidopsis thaliana DNA chromosome ... 68 3e-009
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 68 3e-009
gb|BP625528.1|BP625528 BP625528 RAFL17 Arabidopsis thaliana... 64 4e-008
gb|BP624992.1|BP624992 BP624992 RAFL17 Arabidopsis thaliana... 62 2e-007
emb|BX841615.1|CNS09YLP Arabidopsis thaliana Full-length cD... 48 0.003
>gb|AV781800.1|AV781800 AV781800 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-09-E11 3',
mRNA sequence
Length = 622
Score = 87.7 bits (44), Expect = 3e-015
Identities = 101/120 (84%)
Strand = Plus / Plus
Query: 532 cgcaagatcctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtat 591
||||||||| |||||||| ||||| ||||| ||||||||| ||| |||||||| | ||
Sbjct: 313 cgcaagatcttcttttgaaggaacgtatacataaggaacaccagcctcctcacacaagat 372
Query: 592 cggaacatgtgtaatcacatcaataggagaaatatttccagcgatcacacacaatccttt 651
|||| ||| ||||| ||||||||||| ||||| |||||||| || ||||| ||||||||
Sbjct: 373 tggaagatgagtaataacatcaataggtgaaatgtttccagctattacacataatccttt 432
>gb|AV821375.1|AV821375 AV821375 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-09-E11 5',
mRNA sequence
Length = 641
Score = 87.7 bits (44), Expect = 3e-015
Identities = 101/120 (84%)
Strand = Plus / Minus
Query: 532 cgcaagatcctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtat 591
||||||||| |||||||| ||||| ||||| ||||||||| ||| |||||||| | ||
Sbjct: 396 cgcaagatcttcttttgaaggaacgtatacataaggaacaccagcctcctcacacaagat 337
Query: 592 cggaacatgtgtaatcacatcaataggagaaatatttccagcgatcacacacaatccttt 651
|||| ||| ||||| ||||||||||| ||||| |||||||| || ||||| ||||||||
Sbjct: 336 tggaagatgagtaataacatcaataggtgaaatgtttccagctattacacataatccttt 277
>gb|AF378885.1|AF378885 Arabidopsis thaliana AT5g08180/T22D6_120 mRNA, complete cds
Length = 703
Score = 87.7 bits (44), Expect = 3e-015
Identities = 101/120 (84%)
Strand = Plus / Minus
Query: 532 cgcaagatcctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtat 591
||||||||| |||||||| ||||| ||||| ||||||||| ||| |||||||| | ||
Sbjct: 392 cgcaagatcttcttttgaaggaacgtatacataaggaacaccagcctcctcacacaagat 333
Query: 592 cggaacatgtgtaatcacatcaataggagaaatatttccagcgatcacacacaatccttt 651
|||| ||| ||||| ||||||||||| ||||| |||||||| || ||||| ||||||||
Sbjct: 332 tggaagatgagtaataacatcaataggtgaaatgtttccagctattacacataatccttt 273
>gb|AY050477.1| Arabidopsis thaliana AT5g08180/T22D6_120 mRNA, complete cds
Length = 471
Score = 87.7 bits (44), Expect = 3e-015
Identities = 101/120 (84%)
Strand = Plus / Minus
Query: 532 cgcaagatcctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtat 591
||||||||| |||||||| ||||| ||||| ||||||||| ||| |||||||| | ||
Sbjct: 318 cgcaagatcttcttttgaaggaacgtatacataaggaacaccagcctcctcacacaagat 259
Query: 592 cggaacatgtgtaatcacatcaataggagaaatatttccagcgatcacacacaatccttt 651
|||| ||| ||||| ||||||||||| ||||| |||||||| || ||||| ||||||||
Sbjct: 258 tggaagatgagtaataacatcaataggtgaaatgtttccagctattacacataatccttt 199
>ref|NM_120901.2| Arabidopsis thaliana RNA binding / structural constituent of
ribosome AT5G08180 mRNA, complete cds
Length = 731
Score = 87.7 bits (44), Expect = 3e-015
Identities = 101/120 (84%)
Strand = Plus / Minus
Query: 532 cgcaagatcctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtat 591
||||||||| |||||||| ||||| ||||| ||||||||| ||| |||||||| | ||
Sbjct: 392 cgcaagatcttcttttgaaggaacgtatacataaggaacaccagcctcctcacacaagat 333
Query: 592 cggaacatgtgtaatcacatcaataggagaaatatttccagcgatcacacacaatccttt 651
|||| ||| ||||| ||||||||||| ||||| |||||||| || ||||| ||||||||
Sbjct: 332 tggaagatgagtaataacatcaataggtgaaatgtttccagctattacacataatccttt 273
>gb|BU634909.1|BU634909 012F05 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 677
Score = 79.8 bits (40), Expect = 7e-013
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 532 cgcaagatcctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtat 591
||||||||| |||||||| ||||| ||||| ||||||||| ||| |||||||| | ||
Sbjct: 431 cgcaagatcttcttttgaaggaacgtatacataaggaacaccagcctcctcacacaagat 372
Query: 592 cggaacatgtgtaatcacatcaataggagaaatatttccagcgatcacacacaatccttt 651
|||| ||| |||| ||||||||||| ||||| |||||||| || ||||| ||||||||
Sbjct: 371 tggaagatgagtaaaaacatcaataggtgaaatgtttccagctattacacataatccttt 312
>gb|BP624009.1|BP624009 BP624009 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-38-K02 3',
mRNA sequence
Length = 414
Score = 77.8 bits (39), Expect = 3e-012
Identities = 99/119 (83%)
Strand = Plus / Plus
Query: 533 gcaagatcctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtatc 592
|||||||| |||||||| ||||| ||||| ||||||||| ||| |||| ||| | ||
Sbjct: 241 gcaagatcttcttttgaaggaacgtatacataaggaacaccagcctcctaacacaagatt 300
Query: 593 ggaacatgtgtaatcacatcaataggagaaatatttccagcgatcacacacaatccttt 651
|||| ||| ||||| ||||||||||| ||||| |||||||| || ||||| ||||||||
Sbjct: 301 ggaagatgagtaataacatcaataggtgaaatgtttccagctattacacataatccttt 359
>gb|AV554586.1|AV554586 AV554586 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ95g09R 5', mRNA sequence
Length = 320
Score = 71.9 bits (36), Expect = 2e-010
Identities = 99/120 (82%)
Strand = Plus / Minus
Query: 532 cgcaagatcctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtat 591
||||||||| |||||||| ||||| ||||| ||||||||| ||| |||||||| | ||
Sbjct: 300 cgcaagatcttcttttgaaggaacgtatacataaggaacaccagcctcctcacacaagat 241
Query: 592 cggaacatgtgtaatcacatcaataggagaaatatttccagcgatcacacacaatccttt 651
|||| ||| ||||| ||||||||||| ||||| || ||||| || ||||| || |||||
Sbjct: 240 tggaagatgagtaataacatcaataggtgaaatgttgccagctattacacataagccttt 181
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 67.9 bits (34), Expect = 3e-009
Identities = 88/106 (83%)
Strand = Plus / Plus
Query: 542 tcttttgatggaacatatacgtaaggaacattagcttcctcacatagtatcggaacatgt 601
|||||||| ||||| ||||| ||||||||| ||| |||||||| | || |||| |||
Sbjct: 2451135 tcttttgaaggaacgtatacataaggaacaccagcctcctcacacaagattggaagatga 2451194
Query: 602 gtaatcacatcaataggagaaatatttccagcgatcacacacaatc 647
||||| ||||||||||| ||||| |||||||| || ||||| ||||
Sbjct: 2451195 gtaataacatcaataggtgaaatgtttccagctattacacataatc 2451240
>emb|AL357612.1|ATT22D6 Arabidopsis thaliana DNA chromosome 5, BAC clone T22D6 (ESSA project)
Length = 89988
Score = 67.9 bits (34), Expect = 3e-009
Identities = 88/106 (83%)
Strand = Plus / Plus
Query: 542 tcttttgatggaacatatacgtaaggaacattagcttcctcacatagtatcggaacatgt 601
|||||||| ||||| ||||| ||||||||| ||| |||||||| | || |||| |||
Sbjct: 58767 tcttttgaaggaacgtatacataaggaacaccagcctcctcacacaagattggaagatga 58826
Query: 602 gtaatcacatcaataggagaaatatttccagcgatcacacacaatc 647
||||| ||||||||||| ||||| |||||||| || ||||| ||||
Sbjct: 58827 gtaataacatcaataggtgaaatgtttccagctattacacataatc 58872
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 67.9 bits (34), Expect = 3e-009
Identities = 88/106 (83%)
Strand = Plus / Plus
Query: 542 tcttttgatggaacatatacgtaaggaacattagcttcctcacatagtatcggaacatgt 601
|||||||| ||||| ||||| ||||||||| ||| |||||||| | || |||| |||
Sbjct: 2632099 tcttttgaaggaacgtatacataaggaacaccagcctcctcacacaagattggaagatga 2632158
Query: 602 gtaatcacatcaataggagaaatatttccagcgatcacacacaatc 647
||||| ||||||||||| ||||| |||||||| || ||||| ||||
Sbjct: 2632159 gtaataacatcaataggtgaaatgtttccagctattacacataatc 2632204
>gb|BP625528.1|BP625528 BP625528 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-44-C08 3',
mRNA sequence
Length = 436
Score = 63.9 bits (32), Expect = 4e-008
Identities = 83/100 (83%)
Strand = Plus / Plus
Query: 532 cgcaagatcctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtat 591
||||||||| |||||||| ||||| |||| ||||||||| ||| |||||||| | ||
Sbjct: 337 cgcaagatcttcttttgaaggaacgtataaataaggaacaccagcctcctcacacaagat 396
Query: 592 cggaacatgtgtaatcacatcaataggagaaatatttcca 631
|||| ||| ||||| ||||||||||| ||||| ||||||
Sbjct: 397 tggaagatgagtaataacatcaataggtgaaatgtttcca 436
>gb|BP624992.1|BP624992 BP624992 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-42-D24 3',
mRNA sequence
Length = 425
Score = 61.9 bits (31), Expect = 2e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 532 cgcaagatcctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtat 591
||||||||| |||||||| ||||| ||||| ||||||||| ||| |||||||| | ||
Sbjct: 336 cgcaagatcttcttttgaaggaacgtatacataaggaacaccagcctcctcacacaagat 395
Query: 592 cggaacatgtgtaatcacatcaatagg 618
|||| ||| ||||| |||||||||||
Sbjct: 396 tggaagatgagtaataacatcaatagg 422
>emb|BX841615.1|CNS09YLP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB12ZG04 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 658
Score = 48.1 bits (24), Expect = 0.003
Identities = 90/112 (80%)
Strand = Plus / Minus
Query: 531 tcgcaagatcctcttttgatggaacatatacgtaaggaacattagcttcctcacatagta 590
|||||||||| |||||||| |||||||||| || ||||| ||| ||||||| | |
Sbjct: 396 tcgcaagatcttcttttgaaagaacatatacaaaaagaacaccagccccctcacacaaaa 337
Query: 591 tcggaacatgtgtaatcacatcaataggagaaatatttccagcgatcacaca 642
| |||| ||| ||||| ||||||||||| |||| |||||||| || |||||
Sbjct: 336 ttggaagatgagtaataacatcaataggtcaaatctttccagctattacaca 285
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 387,787
Number of Sequences: 1013581
Number of extensions: 387787
Number of successful extensions: 27323
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 26986
Number of HSP's gapped (non-prelim): 338
length of query: 878
length of database: 908,940,872
effective HSP length: 20
effective length of query: 858
effective length of database: 888,669,252
effective search space: 762478218216
effective search space used: 762478218216
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)