BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11001390.3.1
(588 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ270305.1|ATH270305 Arabidopsis thaliana mRNA for puta... 74 3e-011
gb|AY039534.1| Arabidopsis thaliana At2g32810/F24L7.5 mRNA,... 74 3e-011
emb|AX507537.1| Sequence 2232 from Patent WO0216655 74 3e-011
ref|NM_128841.3| Arabidopsis thaliana BGAL9; beta-galactosi... 74 3e-011
gb|CF773444.1|CF773444 AG_FSL_17A07 Arabidopsis ag-1 35S:AG... 70 5e-010
gb|AI994377.1|AI994377 701502945 A. thaliana, Ohio State cl... 62 1e-007
gb|AV527006.1|AV527006 AV527006 Arabidopsis thaliana aboveg... 62 1e-007
gb|BP859518.1|BP859518 BP859518 RAFL21 Arabidopsis thaliana... 62 1e-007
emb|AJ270297.1|ATH270297 Arabidopsis thaliana mRNA for puta... 62 1e-007
gb|AY064990.1| Arabidopsis thaliana AT3g13750/MMM17_18 mRNA... 62 1e-007
gb|AY093197.1| Arabidopsis thaliana galactosidase, putative... 62 1e-007
ref|NM_112225.3| Arabidopsis thaliana BGAL1; beta-galactosi... 62 1e-007
gb|AQ250652.1|AQ250652 T9F14-T7 TAMU Arabidopsis thaliana g... 58 2e-006
gb|BZ379510.1|BZ379510 SALK_113459.49.85.x Arabidopsis thal... 58 2e-006
gb|BZ379511.1|BZ379511 SALK_113461.49.75.x Arabidopsis thal... 58 2e-006
dbj|AP001307.1| Arabidopsis thaliana genomic DNA, chromosom... 58 2e-006
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 58 2e-006
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 58 2e-006
emb|AL092169.1|CNS00VE3 Arabidopsis thaliana genome survey ... 56 7e-006
gb|BE527291.1|BE527291 M68C11STM Arabidopsis developing see... 50 4e-004
gb|AV530038.1|AV530038 AV530038 Arabidopsis thaliana aboveg... 50 4e-004
gb|BP819466.1|BP819466 BP819466 RAFL19 Arabidopsis thaliana... 50 4e-004
emb|AJ270299.1|ATH270299 Arabidopsis thaliana mRNA for puta... 50 4e-004
gb|AY056285.1| Arabidopsis thaliana putative beta-galactosi... 50 4e-004
gb|AY091432.1| Arabidopsis thaliana putative beta-galactosi... 50 4e-004
emb|AX507841.1| Sequence 2536 from Patent WO0216655 50 4e-004
gb|AC006587.5| Arabidopsis thaliana chromosome 2 clone T17D... 50 4e-004
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 50 4e-004
emb|AL022141.1|ATF23E13 Arabidopsis thaliana DNA chromosome... 50 4e-004
emb|AL161589.2|ATCHRIV85 Arabidopsis thaliana DNA chromosom... 50 4e-004
emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ... 50 4e-004
ref|NM_119799.2| Arabidopsis thaliana BGAL3; beta-galactosi... 50 4e-004
ref|NM_179175.1| Arabidopsis thaliana BGAL3; beta-galactosi... 50 4e-004
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 50 4e-004
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 50 4e-004
emb|AL132969.2|ATF8J2 Arabidopsis thaliana DNA chromosome 3... 48 0.002
emb|AJ270298.1|ATH270298 Arabidopsis thaliana mRNA for puta... 44 0.027
emb|AJ270304.1|ATH270304 Arabidopsis thaliana mRNA for puta... 44 0.027
gb|AF367327.1| Arabidopsis thaliana AT3g52840/F8J2_10 mRNA,... 44 0.027
gb|BT000511.1| Arabidopsis thaliana beta-galactosidase prec... 44 0.027
emb|AX506905.1| Sequence 1600 from Patent WO0216655 44 0.027
gb|AF083670.1| Arabidopsis thaliana clone sps21 unknown mRNA 44 0.027
ref|NM_115144.1| Arabidopsis thaliana beta-galactosidase AT... 44 0.027
ref|NM_179790.1| Arabidopsis thaliana BGAL8; beta-galactosi... 44 0.027
gb|BP838397.1|BP838397 BP838397 RAFL19 Arabidopsis thaliana... 42 0.11
gb|BT002279.1| Arabidopsis thaliana At2g32810/F24L7.5 mRNA,... 42 0.11
gb|AC003974.3| Arabidopsis thaliana chromosome 2 clone F24L... 40 0.42
gb|CL481338.1|CL481338 SAIL_33_D05.v2 SAIL Collection Arabi... 38 1.6
gb|T04796.1|T04796 844 Lambda-PRL2 Arabidopsis thaliana cDN... 38 1.6
gb|T76100.1|T76100 10878 Lambda-PRL2 Arabidopsis thaliana c... 38 1.6
gb|AQ250865.1|AQ250865 T20I22-Sp6 TAMU Arabidopsis thaliana... 36 6.5
gb|AQ957277.1|AQ957277 LERAO87TF LERA Arabidopsis thaliana ... 36 6.5
gb|AQ957278.1|AQ957278 LERAO87TR LERA Arabidopsis thaliana ... 36 6.5
gb|BZ665876.1|BZ665876 SGT1706-5-3 Arabidopsis thaliana Ds ... 36 6.5
emb|AL768777.1| Arabidopsis thaliana T-DNA flanking sequenc... 36 6.5
emb|AL768778.1| Arabidopsis thaliana T-DNA flanking sequenc... 36 6.5
emb|AL768779.1| Arabidopsis thaliana T-DNA flanking sequenc... 36 6.5
emb|CR402454.1| Arabidopsis thaliana T-DNA flanking sequenc... 36 6.5
emb|CR402453.1| Arabidopsis thaliana T-DNA flanking sequenc... 36 6.5
gb|T76101.1|T76101 10879 Lambda-PRL2 Arabidopsis thaliana c... 36 6.5
gb|T88517.1|T88517 12213 Lambda-PRL2 Arabidopsis thaliana c... 36 6.5
gb|AU235606.1|AU235606 AU235606 RAFL14 Arabidopsis thaliana... 36 6.5
gb|CB260829.1|CB260829 57-E9571-012-004-A16-T7R MPIZ-ADIS-0... 36 6.5
gb|BP663164.1|BP663164 BP663164 RAFL21 Arabidopsis thaliana... 36 6.5
gb|BT008307.1| Arabidopsis thaliana At3g14280 gene, complet... 36 6.5
gb|AC015445.3|F2J10 Sequence of BAC F2J10 from Arabidopsis ... 36 6.5
gb|AC023673.3|AC023673 Genomic sequence for Arabidopsis tha... 36 6.5
gb|AC010927.5|ATAC010927 Arabidopsis thaliana chromosome II... 36 6.5
gb|AC003680.3| Arabidopsis thaliana chromosome 2 BAC F17K2 ... 36 6.5
gb|AC004238.3| Arabidopsis thaliana chromosome 2 clone F19I... 36 6.5
emb|BX825966.1|CNS0A66T Arabidopsis thaliana Full-length cD... 36 6.5
emb|BX825622.1|CNS0A7P1 Arabidopsis thaliana Full-length cD... 36 6.5
emb|BX825831.1|CNS0A7NA Arabidopsis thaliana Full-length cD... 36 6.5
emb|BX820582.1|CNS0A9M1 Arabidopsis thaliana Full-length cD... 36 6.5
dbj|AB022220.1| Arabidopsis thaliana genomic DNA, chromosom... 36 6.5
emb|CR381926.1| Arabidopsis thaliana transposon insertion S... 36 6.5
emb|CR381927.1| Arabidopsis thaliana transposon insertion S... 36 6.5
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 36 6.5
ref|NM_111836.2| Arabidopsis thaliana endonuclease/ iron io... 36 6.5
ref|NM_112286.3| Arabidopsis thaliana unknown protein AT3G1... 36 6.5
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 36 6.5
>emb|AJ270305.1|ATH270305 Arabidopsis thaliana mRNA for putative beta-galactosidase (BGAL9
gene)
Length = 2664
Score = 73.8 bits (37), Expect = 3e-011
Identities = 107/129 (82%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 57 ttttatcaacgtgg-ggaagcttacaaaattattacatgtattttggtggaaccaatttt 115
|||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| || |||
Sbjct: 871 ttttatcagcgtggaggaagctttcaaaattattatatgtattttggtggaacaaacttt 930
Query: 116 gagcggacagctggtggtccacttcagataactagctatgattatgatgcaccaattgac 175
| || || |||||||||| | | || || ||||||||||||||||| || ||||
Sbjct: 931 ggtcgaacttctggtggtcctttctacattacaagctatgattatgatgctcctcttgat 990
Query: 176 gaatatggt 184
|||||||||
Sbjct: 991 gaatatggt 999
>gb|AY039534.1| Arabidopsis thaliana At2g32810/F24L7.5 mRNA, complete cds
Length = 2972
Score = 73.8 bits (37), Expect = 3e-011
Identities = 107/129 (82%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 57 ttttatcaacgtgg-ggaagcttacaaaattattacatgtattttggtggaaccaatttt 115
|||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| || |||
Sbjct: 895 ttttatcagcgtggaggaagctttcaaaattattatatgtattttggtggaacaaacttt 954
Query: 116 gagcggacagctggtggtccacttcagataactagctatgattatgatgcaccaattgac 175
| || || |||||||||| | | || || ||||||||||||||||| || ||||
Sbjct: 955 ggtcgaacttctggtggtcctttctacattacaagctatgattatgatgctcctcttgat 1014
Query: 176 gaatatggt 184
|||||||||
Sbjct: 1015 gaatatggt 1023
>emb|AX507537.1| Sequence 2232 from Patent WO0216655
Length = 2688
Score = 73.8 bits (37), Expect = 3e-011
Identities = 107/129 (82%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 57 ttttatcaacgtgg-ggaagcttacaaaattattacatgtattttggtggaaccaatttt 115
|||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| || |||
Sbjct: 871 ttttatcagcgtggaggaagctttcaaaattattatatgtattttggtggaacaaacttt 930
Query: 116 gagcggacagctggtggtccacttcagataactagctatgattatgatgcaccaattgac 175
| || || |||||||||| | | || || ||||||||||||||||| || ||||
Sbjct: 931 ggtcgaacttctggtggtcctttctacattacaagctatgattatgatgctcctcttgat 990
Query: 176 gaatatggt 184
|||||||||
Sbjct: 991 gaatatggt 999
>ref|NM_128841.3| Arabidopsis thaliana BGAL9; beta-galactosidase/ sugar binding
AT2G32810 (BGAL9) mRNA, complete cds
Length = 3943
Score = 73.8 bits (37), Expect = 3e-011
Identities = 107/129 (82%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 57 ttttatcaacgtgg-ggaagcttacaaaattattacatgtattttggtggaaccaatttt 115
|||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| || |||
Sbjct: 877 ttttatcagcgtggaggaagctttcaaaattattatatgtattttggtggaacaaacttt 936
Query: 116 gagcggacagctggtggtccacttcagataactagctatgattatgatgcaccaattgac 175
| || || |||||||||| | | || || ||||||||||||||||| || ||||
Sbjct: 937 ggtcgaacttctggtggtcctttctacattacaagctatgattatgatgctcctcttgat 996
Query: 176 gaatatggt 184
|||||||||
Sbjct: 997 gaatatggt 1005
>gb|CF773444.1|CF773444 AG_FSL_17A07 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 17A07, mRNA sequence
Length = 664
Score = 69.9 bits (35), Expect = 5e-010
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 145 aactagctatgattatgatgcaccaattgacgaatatggtatcttaagacaacctaagtg 204
||||||||||||||||||||| || ||||||||||||| | ||| |||||||||||
Sbjct: 167 aactagctatgattatgatgctcctcttgacgaatatggactagaaaggcaacctaagtg 108
Query: 205 ggggcatttgaaaga 219
|||||| ||||||||
Sbjct: 107 ggggcacttgaaaga 93
>gb|AI994377.1|AI994377 701502945 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701502945, mRNA sequence
Length = 519
Score = 61.9 bits (31), Expect = 1e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 145 aactagctatgattatgatgcaccaattgacgaatatggtatcttaagacaacctaagtg 204
||||||||||||||||||||| || ||||||||||||| | ||| || ||||||||
Sbjct: 275 aactagctatgattatgatgctcctcttgacgaatatggacttgaaaggcagcctaagtg 334
Query: 205 ggggcatttgaaaga 219
|||||| ||||||||
Sbjct: 335 ggggcacttgaaaga 349
>gb|AV527006.1|AV527006 AV527006 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZ26d04R 5', mRNA
sequence
Length = 527
Score = 61.9 bits (31), Expect = 1e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 145 aactagctatgattatgatgcaccaattgacgaatatggtatcttaagacaacctaagtg 204
||||||||||||||||||||| || ||||||||||||| | ||| || ||||||||
Sbjct: 324 aactagctatgattatgatgctcctcttgacgaatatggacttgaaaggcagcctaagtg 383
Query: 205 ggggcatttgaaaga 219
|||||| ||||||||
Sbjct: 384 ggggcacttgaaaga 398
>gb|BP859518.1|BP859518 BP859518 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-40-P12 5',
mRNA sequence
Length = 400
Score = 61.9 bits (31), Expect = 1e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 145 aactagctatgattatgatgcaccaattgacgaatatggtatcttaagacaacctaagtg 204
||||||||||||||||||||| || ||||||||||||| | ||| || ||||||||
Sbjct: 281 aactagctatgattatgatgctcctcttgacgaatatggacttgaaaggcagcctaagtg 340
Query: 205 ggggcatttgaaaga 219
|||||| ||||||||
Sbjct: 341 ggggcacttgaaaga 355
>emb|AJ270297.1|ATH270297 Arabidopsis thaliana mRNA for putative beta-galactosidase (BGAL1
gene)
Length = 3283
Score = 61.9 bits (31), Expect = 1e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 145 aactagctatgattatgatgcaccaattgacgaatatggtatcttaagacaacctaagtg 204
||||||||||||||||||||| || ||||||||||||| | ||| || ||||||||
Sbjct: 1153 aactagctatgattatgatgctcctcttgacgaatatggacttgaaaggcagcctaagtg 1212
Query: 205 ggggcatttgaaaga 219
|||||| ||||||||
Sbjct: 1213 ggggcacttgaaaga 1227
>gb|AY064990.1| Arabidopsis thaliana AT3g13750/MMM17_18 mRNA sequence
Length = 3124
Score = 61.9 bits (31), Expect = 1e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 145 aactagctatgattatgatgcaccaattgacgaatatggtatcttaagacaacctaagtg 204
||||||||||||||||||||| || ||||||||||||| | ||| || ||||||||
Sbjct: 1095 aactagctatgattatgatgctcctcttgacgaatatggacttgaaaggcagcctaagtg 1154
Query: 205 ggggcatttgaaaga 219
|||||| ||||||||
Sbjct: 1155 ggggcacttgaaaga 1169
>gb|AY093197.1| Arabidopsis thaliana galactosidase, putative (At3g13750) mRNA,
complete cds
Length = 3174
Score = 61.9 bits (31), Expect = 1e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 145 aactagctatgattatgatgcaccaattgacgaatatggtatcttaagacaacctaagtg 204
||||||||||||||||||||| || ||||||||||||| | ||| || ||||||||
Sbjct: 1097 aactagctatgattatgatgctcctcttgacgaatatggacttgaaaggcagcctaagtg 1156
Query: 205 ggggcatttgaaaga 219
|||||| ||||||||
Sbjct: 1157 ggggcacttgaaaga 1171
>ref|NM_112225.3| Arabidopsis thaliana BGAL1; beta-galactosidase/ sugar binding
AT3G13750 (BGAL1) mRNA, complete cds
Length = 3300
Score = 61.9 bits (31), Expect = 1e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 145 aactagctatgattatgatgcaccaattgacgaatatggtatcttaagacaacctaagtg 204
||||||||||||||||||||| || ||||||||||||| | ||| || ||||||||
Sbjct: 1162 aactagctatgattatgatgctcctcttgacgaatatggacttgaaaggcagcctaagtg 1221
Query: 205 ggggcatttgaaaga 219
|||||| ||||||||
Sbjct: 1222 ggggcacttgaaaga 1236
>gb|AQ250652.1|AQ250652 T9F14-T7 TAMU Arabidopsis thaliana genomic clone T9F14, DNA
sequence
Length = 715
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 145 aactagctatgattatgatgcaccaattgacgaatatggta 185
||||||||||||||||||||| || |||||||||||||||
Sbjct: 95 aactagctatgattatgatgctcctcttgacgaatatggta 55
>gb|BZ379510.1|BZ379510 SALK_113459.49.85.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_113459.49.85.x,
DNA sequence
Length = 224
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 145 aactagctatgattatgatgcaccaattgacgaatatggta 185
||||||||||||||||||||| || |||||||||||||||
Sbjct: 180 aactagctatgattatgatgctcctcttgacgaatatggta 220
>gb|BZ379511.1|BZ379511 SALK_113461.49.75.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_113461.49.75.x,
DNA sequence
Length = 224
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 145 aactagctatgattatgatgcaccaattgacgaatatggta 185
||||||||||||||||||||| || |||||||||||||||
Sbjct: 180 aactagctatgattatgatgctcctcttgacgaatatggta 220
>dbj|AP001307.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MMM17
Length = 80733
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 145 aactagctatgattatgatgcaccaattgacgaatatggta 185
||||||||||||||||||||| || |||||||||||||||
Sbjct: 58084 aactagctatgattatgatgctcctcttgacgaatatggta 58124
Score = 38.2 bits (19), Expect = 1.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 197 cctaagtgggggcatttgaaaga 219
|||||||||||||| ||||||||
Sbjct: 58224 cctaagtgggggcacttgaaaga 58246
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 145 aactagctatgattatgatgcaccaattgacgaatatggta 185
||||||||||||||||||||| || |||||||||||||||
Sbjct: 4505539 aactagctatgattatgatgctcctcttgacgaatatggta 4505579
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 146 actagctatgattatgatgcaccaattgacgaatatggta 185
||||||||||| || ||||| || ||||||||||||||||
Sbjct: 19547034 actagctatgactacgatgctcctattgacgaatatggta 19547073
Score = 38.2 bits (19), Expect = 1.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 197 cctaagtgggggcatttgaaaga 219
|||||||||||||| ||||||||
Sbjct: 4505679 cctaagtgggggcacttgaaaga 4505701
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 475 ctgtgaaactgtggcttt 492
||||||||||||||||||
Sbjct: 4752266 ctgtgaaactgtggcttt 4752283
Score = 36.2 bits (18), Expect = 6.5
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 153 atgattatgatgcaccaattga 174
||||| ||||||||||||||||
Sbjct: 3099159 atgatgatgatgcaccaattga 3099138
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 145 aactagctatgattatgatgcaccaattgacgaatatggta 185
||||||||||||||||||||| || |||||||||||||||
Sbjct: 4513238 aactagctatgattatgatgctcctcttgacgaatatggta 4513278
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 146 actagctatgattatgatgcaccaattgacgaatatggta 185
||||||||||| || ||||| || ||||||||||||||||
Sbjct: 19594561 actagctatgactacgatgctcctattgacgaatatggta 19594600
Score = 38.2 bits (19), Expect = 1.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 197 cctaagtgggggcatttgaaaga 219
|||||||||||||| ||||||||
Sbjct: 4513378 cctaagtgggggcacttgaaaga 4513400
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 475 ctgtgaaactgtggcttt 492
||||||||||||||||||
Sbjct: 4762162 ctgtgaaactgtggcttt 4762179
Score = 36.2 bits (18), Expect = 6.5
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 153 atgattatgatgcaccaattga 174
||||| ||||||||||||||||
Sbjct: 3087666 atgatgatgatgcaccaattga 3087687
>emb|AL092169.1|CNS00VE3 Arabidopsis thaliana genome survey sequence T7 end of BAC T9F14 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 353
Score = 56.0 bits (28), Expect = 7e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 145 aactagctatgattatgatgcaccaattgacgaatatggt 184
||||||||||||||||||||| || ||||||||||||||
Sbjct: 40 aactagctatgattatgatgctcctcttgacgaatatggt 1
>gb|BE527291.1|BE527291 M68C11STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600036142R1 5', mRNA sequence
Length = 244
Score = 50.1 bits (25), Expect = 4e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatggtatcttaagacaacctaa 201
||||||||||||||||| || || |||||||||||| | | |||||||||||
Sbjct: 10 agctatgattatgatgctccgatcgacgaatatggtttaatcagacaacctaa 62
>gb|AV530038.1|AV530038 AV530038 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL56f01R 5', mRNA
sequence
Length = 543
Score = 50.1 bits (25), Expect = 4e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatggtatcttaagacaacctaa 201
||||||||||||||||| || || |||||||||||| | | |||||||||||
Sbjct: 486 agctatgattatgatgctccgatcgacgaatatggtttaatcagacaacctaa 538
>gb|BP819466.1|BP819466 BP819466 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-51-G01 5',
mRNA sequence
Length = 394
Score = 50.1 bits (25), Expect = 4e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatggtatcttaagacaacctaa 201
||||||||||||||||| || || |||||||||||| | | |||||||||||
Sbjct: 116 agctatgattatgatgctccgatcgacgaatatggtttaatcagacaacctaa 168
>emb|AJ270299.1|ATH270299 Arabidopsis thaliana mRNA for putative beta-galactosidase (BGAL3
gene)
Length = 3067
Score = 50.1 bits (25), Expect = 4e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatggtatcttaagacaacctaa 201
||||||||||||||||| || || |||||||||||| | | |||||||||||
Sbjct: 989 agctatgattatgatgctccgatcgacgaatatggtttaatcagacaacctaa 1041
>gb|AY056285.1| Arabidopsis thaliana putative beta-galactosidase (At4g36360) mRNA,
complete cds
Length = 2748
Score = 50.1 bits (25), Expect = 4e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatggtatcttaagacaacctaa 201
||||||||||||||||| || || |||||||||||| | | |||||||||||
Sbjct: 1048 agctatgattatgatgctccgatcgacgaatatggtttaatcagacaacctaa 1100
>gb|AY091432.1| Arabidopsis thaliana putative beta-galactosidase (At4g36360) mRNA,
complete cds
Length = 2602
Score = 50.1 bits (25), Expect = 4e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatggtatcttaagacaacctaa 201
||||||||||||||||| || || |||||||||||| | | |||||||||||
Sbjct: 949 agctatgattatgatgctccgatcgacgaatatggtttaatcagacaacctaa 1001
>emb|AX507841.1| Sequence 2536 from Patent WO0216655
Length = 2562
Score = 50.1 bits (25), Expect = 4e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatggtatcttaagacaacctaa 201
||||||||||||||||| || || |||||||||||| | | |||||||||||
Sbjct: 940 agctatgattatgatgctccgatcgacgaatatggtttaatcagacaacctaa 992
>gb|AC006587.5| Arabidopsis thaliana chromosome 2 clone T17D12 map mi54, complete
sequence
Length = 86579
Score = 50.1 bits (25), Expect = 4e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 146 actagctatgattatgatgcaccaattgacgaatatggtat 186
||||| |||||||||||||| |||||||| || ||||||||
Sbjct: 6362 actagttatgattatgatgctccaattgatgagtatggtat 6322
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 149 agctatgattatgatgcaccaattgacgaatatggta 185
||||||||||||||||| || || |||||||||||||
Sbjct: 13092072 agctatgattatgatgctccgatcgacgaatatggta 13092036
>emb|AL022141.1|ATF23E13 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E13 (ESSAII
project)
Length = 94695
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 149 agctatgattatgatgcaccaattgacgaatatggta 185
||||||||||||||||| || || |||||||||||||
Sbjct: 83863 agctatgattatgatgctccgatcgacgaatatggta 83827
>emb|AL161589.2|ATCHRIV85 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85
Length = 198750
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 149 agctatgattatgatgcaccaattgacgaatatggta 185
||||||||||||||||| || || |||||||||||||
Sbjct: 60585 agctatgattatgatgctccgatcgacgaatatggta 60549
>emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2
Length = 198354
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatggta 185
||||||||||||||||| || || |||||||||||||
Sbjct: 190143 agctatgattatgatgctccgatcgacgaatatggta 190179
>ref|NM_119799.2| Arabidopsis thaliana BGAL3; beta-galactosidase/ sugar binding
AT4G36360 (BGAL3) transcript variant AT4G36360.1 mRNA,
complete cds
Length = 3168
Score = 50.1 bits (25), Expect = 4e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatggtatcttaagacaacctaa 201
||||||||||||||||| || || |||||||||||| | | |||||||||||
Sbjct: 1048 agctatgattatgatgctccgatcgacgaatatggtttaatcagacaacctaa 1100
>ref|NM_179175.1| Arabidopsis thaliana BGAL3; beta-galactosidase/ sugar binding
AT4G36360 (BGAL3) transcript variant AT4G36360.2 mRNA,
complete cds
Length = 3165
Score = 50.1 bits (25), Expect = 4e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatggtatcttaagacaacctaa 201
||||||||||||||||| || || |||||||||||| | | |||||||||||
Sbjct: 1048 agctatgattatgatgctccgatcgacgaatatggtttaatcagacaacctaa 1100
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 50.1 bits (25), Expect = 4e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 146 actagctatgattatgatgcaccaattgacgaatatggtat 186
||||| |||||||||||||| |||||||| || ||||||||
Sbjct: 12178585 actagttatgattatgatgctccaattgatgagtatggtat 12178545
Score = 40.1 bits (20), Expect = 0.42
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 149 agctatgattatgatgcaccaattgacgaatatggt 184
||||||||||||||||| || |||| |||||||||
Sbjct: 13930015 agctatgattatgatgctcctcttgatgaatatggt 13929980
Score = 38.2 bits (19), Expect = 1.6
Identities = 32/35 (91%), Gaps = 1/35 (2%)
Strand = Plus / Minus
Query: 57 ttttatcaacgtgg-ggaagcttacaaaattatta 90
|||||||| ||||| |||||||| |||||||||||
Sbjct: 13930467 ttttatcagcgtggaggaagctttcaaaattatta 13930433
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 144 taactagctatgattatg 161
||||||||||||||||||
Sbjct: 18807328 taactagctatgattatg 18807345
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 210 atttgaaagacctacatg 227
||||||||||||||||||
Sbjct: 14714098 atttgaaagacctacatg 14714081
Score = 36.2 bits (18), Expect = 6.5
Identities = 45/54 (83%)
Strand = Plus / Minus
Query: 203 tgggggcatttgaaagacctacatgcagctattaaactttgtgaatcagctctt 256
||||||||| | || ||||| ||||| || || |||||||||||| | ||||||
Sbjct: 13929868 tgggggcatctaaaggaccttcatgctgccataaaactttgtgaacctgctctt 13929815
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 149 agctatgattatgatgcaccaattgacgaatatggta 185
||||||||||||||||| || || |||||||||||||
Sbjct: 17179279 agctatgattatgatgctccgatcgacgaatatggta 17179243
>emb|AL132969.2|ATF8J2 Arabidopsis thaliana DNA chromosome 3, BAC clone F8J2
Length = 99814
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 146 actagctatgattatgatgcaccaattgacgaatatggta 185
||||||||||| || ||||| || ||||||||||||||||
Sbjct: 6963 actagctatgactacgatgctcctattgacgaatatggta 7002
>emb|AJ270298.1|ATH270298 Arabidopsis thaliana mRNA for putative beta-galactosidase (BGAL2
gene)
Length = 2442
Score = 44.1 bits (22), Expect = 0.027
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 146 actagctatgattatgatgcaccaattgacgaatatgg 183
||||||||||| || ||||| || ||||||||||||||
Sbjct: 977 actagctatgactacgatgctcctattgacgaatatgg 1014
>emb|AJ270304.1|ATH270304 Arabidopsis thaliana mRNA for putative beta-galactosidase (BGAL8
gene)
Length = 2781
Score = 44.1 bits (22), Expect = 0.027
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 146 actagctatgattatgatgcaccaattgacgaatatgg 183
||||| |||||||||||||| |||||||| || |||||
Sbjct: 971 actagttatgattatgatgctccaattgatgagtatgg 1008
>gb|AF367327.1| Arabidopsis thaliana AT3g52840/F8J2_10 mRNA, complete cds
Length = 2476
Score = 44.1 bits (22), Expect = 0.027
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 146 actagctatgattatgatgcaccaattgacgaatatgg 183
||||||||||| || ||||| || ||||||||||||||
Sbjct: 1020 actagctatgactacgatgctcctattgacgaatatgg 1057
>gb|BT000511.1| Arabidopsis thaliana beta-galactosidase precursor-like protein
(At3g52840/F8J2_10) mRNA, complete cds
Length = 2184
Score = 44.1 bits (22), Expect = 0.027
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 146 actagctatgattatgatgcaccaattgacgaatatgg 183
||||||||||| || ||||| || ||||||||||||||
Sbjct: 931 actagctatgactacgatgctcctattgacgaatatgg 968
>emb|AX506905.1| Sequence 1600 from Patent WO0216655
Length = 2520
Score = 44.1 bits (22), Expect = 0.027
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 146 actagctatgattatgatgcaccaattgacgaatatgg 183
||||| |||||||||||||| |||||||| || |||||
Sbjct: 925 actagttatgattatgatgctccaattgatgagtatgg 962
>gb|AF083670.1| Arabidopsis thaliana clone sps21 unknown mRNA
Length = 1784
Score = 44.1 bits (22), Expect = 0.027
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 146 actagctatgattatgatgcaccaattgacgaatatgg 183
||||||||||| || ||||| || ||||||||||||||
Sbjct: 1008 actagctatgactacgatgctcctattgacgaatatgg 1045
>ref|NM_115144.1| Arabidopsis thaliana beta-galactosidase AT3G52840 mRNA, complete cds
Length = 2476
Score = 44.1 bits (22), Expect = 0.027
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 146 actagctatgattatgatgcaccaattgacgaatatgg 183
||||||||||| || ||||| || ||||||||||||||
Sbjct: 1021 actagctatgactacgatgctcctattgacgaatatgg 1058
>ref|NM_179790.1| Arabidopsis thaliana BGAL8; beta-galactosidase/ sugar binding
AT2G28470 (BGAL8) mRNA, complete cds
Length = 3055
Score = 44.1 bits (22), Expect = 0.027
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 146 actagctatgattatgatgcaccaattgacgaatatgg 183
||||| |||||||||||||| |||||||| || |||||
Sbjct: 1245 actagttatgattatgatgctccaattgatgagtatgg 1282
>gb|BP838397.1|BP838397 BP838397 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-23-M13 5',
mRNA sequence
Length = 380
Score = 42.1 bits (21), Expect = 0.11
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 151 ctatgattatgatgcaccaattgacgaatatgg 183
||||||||||||||| || || |||||||||||
Sbjct: 123 ctatgattatgatgctccgatcgacgaatatgg 155
>gb|BT002279.1| Arabidopsis thaliana At2g32810/F24L7.5 mRNA, complete cds
Length = 1758
Score = 42.1 bits (21), Expect = 0.11
Identities = 75/93 (80%)
Strand = Plus / Plus
Query: 92 atgtattttggtggaaccaattttgagcggacagctggtggtccacttcagataactagc 151
||||||||||||||||| || |||| || || |||||||||| | | || || |||
Sbjct: 1 atgtattttggtggaacaaactttggtcgaacttctggtggtcctttctacattacaagc 60
Query: 152 tatgattatgatgcaccaattgacgaatatggt 184
|||||||||||||| || |||| |||||||||
Sbjct: 61 tatgattatgatgctcctcttgatgaatatggt 93
Score = 36.2 bits (18), Expect = 6.5
Identities = 45/54 (83%)
Strand = Plus / Plus
Query: 203 tgggggcatttgaaagacctacatgcagctattaaactttgtgaatcagctctt 256
||||||||| | || ||||| ||||| || || |||||||||||| | ||||||
Sbjct: 112 tgggggcatctaaaggaccttcatgctgccataaaactttgtgaacctgctctt 165
>gb|AC003974.3| Arabidopsis thaliana chromosome 2 clone F24L7 map TEn5, complete
sequence
Length = 92612
Score = 40.1 bits (20), Expect = 0.42
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatggt 184
||||||||||||||||| || |||| |||||||||
Sbjct: 16223 agctatgattatgatgctcctcttgatgaatatggt 16258
Score = 38.2 bits (19), Expect = 1.6
Identities = 32/35 (91%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 57 ttttatcaacgtgg-ggaagcttacaaaattatta 90
|||||||| ||||| |||||||| |||||||||||
Sbjct: 15771 ttttatcagcgtggaggaagctttcaaaattatta 15805
Score = 36.2 bits (18), Expect = 6.5
Identities = 45/54 (83%)
Strand = Plus / Plus
Query: 203 tgggggcatttgaaagacctacatgcagctattaaactttgtgaatcagctctt 256
||||||||| | || ||||| ||||| || || |||||||||||| | ||||||
Sbjct: 16370 tgggggcatctaaaggaccttcatgctgccataaaactttgtgaacctgctctt 16423
>gb|CL481338.1|CL481338 SAIL_33_D05.v2 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_33_D05.v2, DNA sequence
Length = 1592
Score = 38.2 bits (19), Expect = 1.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 44 tgctgttgctcgtttttat 62
|||||||||||||||||||
Sbjct: 912 tgctgttgctcgtttttat 894
>gb|T04796.1|T04796 844 Lambda-PRL2 Arabidopsis thaliana cDNA clone 4G4T7P, mRNA
sequence
Length = 379
Score = 38.2 bits (19), Expect = 1.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 197 cctaagtgggggcatttgaaaga 219
|||||||||||||| ||||||||
Sbjct: 25 cctaagtgggggcacttgaaaga 47
>gb|T76100.1|T76100 10878 Lambda-PRL2 Arabidopsis thaliana cDNA clone 142M10T7, mRNA
sequence
Length = 403
Score = 38.2 bits (19), Expect = 1.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 197 cctaagtgggggcatttgaaaga 219
|||||||||||||| ||||||||
Sbjct: 9 cctaagtgggggcacttgaaaga 31
>gb|AQ250865.1|AQ250865 T20I22-Sp6 TAMU Arabidopsis thaliana genomic clone T20I22, DNA
sequence
Length = 852
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 417 tctggatttttggaaaat 434
||||||||||||||||||
Sbjct: 845 tctggatttttggaaaat 828
>gb|AQ957277.1|AQ957277 LERAO87TF LERA Arabidopsis thaliana genomic clone LERAO87, DNA
sequence
Length = 734
Score = 36.2 bits (18), Expect = 6.5
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 153 atgattatgatgcaccaattga 174
||||| ||||||||||||||||
Sbjct: 328 atgatgatgatgcaccaattga 349
>gb|AQ957278.1|AQ957278 LERAO87TR LERA Arabidopsis thaliana genomic clone LERAO87, DNA
sequence
Length = 699
Score = 36.2 bits (18), Expect = 6.5
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 153 atgattatgatgcaccaattga 174
||||| ||||||||||||||||
Sbjct: 654 atgatgatgatgcaccaattga 633
>gb|BZ665876.1|BZ665876 SGT1706-5-3 Arabidopsis thaliana Ds insertion lines Arabidopsis
thaliana genomic clone SGT1706, DNA sequence
Length = 204
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 210 atttgaaagacctacatg 227
||||||||||||||||||
Sbjct: 91 atttgaaagacctacatg 74
>emb|AL768777.1| Arabidopsis thaliana T-DNA flanking sequence GK-079A12-011888,
genomic survey sequence
Length = 424
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 475 ctgtgaaactgtggcttt 492
||||||||||||||||||
Sbjct: 155 ctgtgaaactgtggcttt 172
>emb|AL768778.1| Arabidopsis thaliana T-DNA flanking sequence GK-079A12-011917,
genomic survey sequence
Length = 609
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 475 ctgtgaaactgtggcttt 492
||||||||||||||||||
Sbjct: 252 ctgtgaaactgtggcttt 269
>emb|AL768779.1| Arabidopsis thaliana T-DNA flanking sequence GK-079A12-011918,
genomic survey sequence
Length = 519
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 475 ctgtgaaactgtggcttt 492
||||||||||||||||||
Sbjct: 231 ctgtgaaactgtggcttt 248
>emb|CR402454.1| Arabidopsis thaliana T-DNA flanking sequence GK-855C02-025847,
genomic survey sequence
Length = 148
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 144 taactagctatgattatg 161
||||||||||||||||||
Sbjct: 62 taactagctatgattatg 79
>emb|CR402453.1| Arabidopsis thaliana T-DNA flanking sequence GK-855C02-025758,
genomic survey sequence
Length = 495
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 144 taactagctatgattatg 161
||||||||||||||||||
Sbjct: 49 taactagctatgattatg 66
>gb|T76101.1|T76101 10879 Lambda-PRL2 Arabidopsis thaliana cDNA clone 142M15T7, mRNA
sequence
Length = 472
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 475 ctgtgaaactgtggcttt 492
||||||||||||||||||
Sbjct: 186 ctgtgaaactgtggcttt 169
>gb|T88517.1|T88517 12213 Lambda-PRL2 Arabidopsis thaliana cDNA clone 157M6T7, mRNA
sequence
Length = 413
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 475 ctgtgaaactgtggcttt 492
||||||||||||||||||
Sbjct: 239 ctgtgaaactgtggcttt 222
>gb|AU235606.1|AU235606 AU235606 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-25-N02 5',
mRNA sequence
Length = 623
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 475 ctgtgaaactgtggcttt 492
||||||||||||||||||
Sbjct: 226 ctgtgaaactgtggcttt 209
>gb|CB260829.1|CB260829 57-E9571-012-004-A16-T7R MPIZ-ADIS-012 Arabidopsis thaliana cDNA
clone MPIZp769A164Q 5-PRIME, mRNA sequence
Length = 593
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 475 ctgtgaaactgtggcttt 492
||||||||||||||||||
Sbjct: 241 ctgtgaaactgtggcttt 224
>gb|BP663164.1|BP663164 BP663164 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-46-P15 3',
mRNA sequence
Length = 399
Score = 36.2 bits (18), Expect = 6.5
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 329 aatgtccacacaaatggaagcatttc 354
|||||| |||| ||||||||||||||
Sbjct: 387 aatgtcgacaccaatggaagcatttc 362
>gb|BT008307.1| Arabidopsis thaliana At3g14280 gene, complete cds
Length = 426
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 475 ctgtgaaactgtggcttt 492
||||||||||||||||||
Sbjct: 132 ctgtgaaactgtggcttt 115
>gb|AC015445.3|F2J10 Sequence of BAC F2J10 from Arabidopsis thaliana chromosome 1,
complete sequence
Length = 91720
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 402 ataaatatgcttcagtct 419
||||||||||||||||||
Sbjct: 4823 ataaatatgcttcagtct 4840
>gb|AC023673.3|AC023673 Genomic sequence for Arabidopsis thaliana BAC F21D18 from chromosome I,
complete sequence
Length = 109367
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 85 ttattacatgtattttgg 102
||||||||||||||||||
Sbjct: 53959 ttattacatgtattttgg 53942
>gb|AC010927.5|ATAC010927 Arabidopsis thaliana chromosome III BAC T22K18 genomic sequence,
complete sequence
Length = 96232
Score = 36.2 bits (18), Expect = 6.5
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 153 atgattatgatgcaccaattga 174
||||| ||||||||||||||||
Sbjct: 55876 atgatgatgatgcaccaattga 55855
>gb|AC003680.3| Arabidopsis thaliana chromosome 2 BAC F17K2 genomic sequence, complete
sequence
Length = 91854
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 144 taactagctatgattatg 161
||||||||||||||||||
Sbjct: 53598 taactagctatgattatg 53615
>gb|AC004238.3| Arabidopsis thaliana chromosome 2 clone F19I3 map ve016, complete
sequence
Length = 108484
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 210 atttgaaagacctacatg 227
||||||||||||||||||
Sbjct: 35696 atttgaaagacctacatg 35679
>emb|BX825966.1|CNS0A66T Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL76ZF08 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 750
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 475 ctgtgaaactgtggcttt 492
||||||||||||||||||
Sbjct: 234 ctgtgaaactgtggcttt 217
>emb|BX825622.1|CNS0A7P1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL4ZF09 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 721
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 475 ctgtgaaactgtggcttt 492
||||||||||||||||||
Sbjct: 244 ctgtgaaactgtggcttt 227
>emb|BX825831.1|CNS0A7NA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL65ZH03 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 713
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 475 ctgtgaaactgtggcttt 492
||||||||||||||||||
Sbjct: 240 ctgtgaaactgtggcttt 223
>emb|BX820582.1|CNS0A9M1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH4ZE04 of Hormone Treated Callus of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1690
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 144 taactagctatgattatg 161
||||||||||||||||||
Sbjct: 1106 taactagctatgattatg 1089
>dbj|AB022220.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLN21
Length = 83906
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 475 ctgtgaaactgtggcttt 492
||||||||||||||||||
Sbjct: 26253 ctgtgaaactgtggcttt 26270
>emb|CR381926.1| Arabidopsis thaliana transposon insertion STS GT_5.107168, sequence
tagged site
Length = 494
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 210 atttgaaagacctacatg 227
||||||||||||||||||
Sbjct: 199 atttgaaagacctacatg 216
>emb|CR381927.1| Arabidopsis thaliana transposon insertion STS GT_5.107178, sequence
tagged site
Length = 493
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 210 atttgaaagacctacatg 227
||||||||||||||||||
Sbjct: 205 atttgaaagacctacatg 222
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 402 ataaatatgcttcagtct 419
||||||||||||||||||
Sbjct: 2930519 ataaatatgcttcagtct 2930502
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 85 ttattacatgtattttgg 102
||||||||||||||||||
Sbjct: 2126763 ttattacatgtattttgg 2126780
>ref|NM_111836.2| Arabidopsis thaliana endonuclease/ iron ion binding AT3G10010 mRNA,
complete cds
Length = 4115
Score = 36.2 bits (18), Expect = 6.5
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 153 atgattatgatgcaccaattga 174
||||| ||||||||||||||||
Sbjct: 256 atgatgatgatgcaccaattga 235
>ref|NM_112286.3| Arabidopsis thaliana unknown protein AT3G14280 mRNA, complete cds
Length = 1212
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 475 ctgtgaaactgtggcttt 492
||||||||||||||||||
Sbjct: 241 ctgtgaaactgtggcttt 224
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 402 ataaatatgcttcagtct 419
||||||||||||||||||
Sbjct: 18574925 ataaatatgcttcagtct 18574908
Score = 36.2 bits (18), Expect = 6.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 85 ttattacatgtattttgg 102
||||||||||||||||||
Sbjct: 17771170 ttattacatgtattttgg 17771187
Database: At_nucl_with_EST.fasta
Posted date: May 2, 2006 2:53 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 293,750
Number of Sequences: 1013581
Number of extensions: 293750
Number of successful extensions: 21024
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19592
Number of HSP's gapped (non-prelim): 1424
length of query: 588
length of database: 908,940,872
effective HSP length: 20
effective length of query: 568
effective length of database: 888,669,252
effective search space: 504764135136
effective search space used: 504764135136
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)