BLASTX 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5735869.2.1
(539 letters)
Database: /db/trembl-ebi/tmp/swall
1,272,877 sequences; 406,886,216 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sptrnew|CAD41529|CAD41529 OSJNBb0020O11.3 protein. 71 7e-18
sptr|Q9FDZ8|Q9FDZ8 F6N15.19 (Hypothetical 28.3 kDa protein). 51 1e-07
sptr|O81315|O81315 F6N15.19 protein. 47 1e-04
sptrnew|CAD97467|CAD97467 Keratin associated protein KAP10.10. 33 2.0
sptr|Q84U23|Q84U23 LIPLESS2. 32 5.8
sptr|Q86285|Q86285 ORF protein. 31 9.9
>sptrnew|CAD41529|CAD41529 OSJNBb0020O11.3 protein.
Length = 288
Score = 70.9 bits (172), Expect(2) = 7e-18
Identities = 30/40 (75%), Positives = 33/40 (82%)
Frame = -1
Query: 500 GKGYXXXWDXERMATINDFIWTDSEISKMVRCFDSDGDDK 381
GKGY WD ERMAT++DFIWTDSEISKM+ CFDSD D K
Sbjct: 226 GKGYITPWDLERMATVHDFIWTDSEISKMIHCFDSDRDGK 265
Score = 40.8 bits (94), Expect(2) = 7e-18
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -2
Query: 385 INLEDFRSIVSQCNMLQEHEK*G 317
INLEDFR+IVS+CNMLQE EK G
Sbjct: 266 INLEDFRTIVSRCNMLQEPEKSG 288
>sptr|Q9FDZ8|Q9FDZ8 F6N15.19 (Hypothetical 28.3 kDa protein).
Length = 254
Score = 51.2 bits (121), Expect(2) = 1e-07
Identities = 20/40 (50%), Positives = 27/40 (67%)
Frame = -1
Query: 500 GKGYXXXWDXERMATINDFIWTDSEISKMVRCFDSDGDDK 381
GKG+ D +MAT++DF WT+ E+ M+RCFD D D K
Sbjct: 196 GKGFITLRDVAKMATVHDFTWTEEELQDMIRCFDMDKDGK 235
Score = 25.4 bits (54), Expect(2) = 1e-07
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = -2
Query: 385 INLEDFRSIVSQCNMLQ 335
++L++FR IVS+C ML+
Sbjct: 236 LSLDEFRKIVSRCRMLK 252
>sptr|O81315|O81315 F6N15.19 protein.
Length = 257
Score = 47.4 bits (111), Expect = 1e-04
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = -1
Query: 500 GKGYXXXWDXERMATINDFIWTDSEISKMVRCFDSDGDDK 381
GKG+ D +MAT++DF WT+ E+ M+R FD D D K
Sbjct: 93 GKGFITRRDVAKMATVHDFTWTEEELQDMIRSFDMDKDGK 132
>sptrnew|CAD97467|CAD97467 Keratin associated protein KAP10.10.
Length = 251
Score = 33.1 bits (74), Expect = 2.0
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +1
Query: 205 LCSMALCPLLSQQC*CNFTG*AMQN*STSICRPATLVILTSH--APATCCIEIQCCGNPR 378
+C + +C S C C + + S CRP++ V L H +TCC+ + CG
Sbjct: 155 VCYVPVCSGASTSC-CQQSSCQPACCTASCCRPSSSVSLLCHPVCKSTCCVPVPSCGASA 213
Query: 379 GLSSPSLSKQRTILDI 426
PS + + + +
Sbjct: 214 SSCQPSCCRTASCVSL 229
>sptr|Q84U23|Q84U23 LIPLESS2.
Length = 505
Score = 31.6 bits (70), Expect = 5.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 230 SGHRAIEHNLCSCSLSSPVDRGFYDSTD 147
S H +H+ C+CS SSPV R F+ D
Sbjct: 59 SVHSCCDHDTCTCSSSSPVTRQFFPVED 86
>sptr|Q86285|Q86285 ORF protein.
Length = 436
Score = 30.8 bits (68), Expect = 9.9
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Frame = +3
Query: 123 LQSPSPKQVSRIIKSPINWT*QAATTKVMFNGS--------MSATIPTVLMQFHRLGHAK 278
L S K + P NWT + + FN S AT+ +L Q RLG
Sbjct: 336 LSPVSKKSCRECYRIPRNWT-----SSIYFNNSGDGTIAKDSKATVLKILPQLARLGKLN 390
Query: 279 LEYKHLQTSNTR 314
L + T NTR
Sbjct: 391 LSTNEISTDNTR 402
Database: /db/trembl-ebi/tmp/swall
Posted date: Sep 26, 2003 8:29 PM
Number of letters in database: 406,886,216
Number of sequences in database: 1,272,877
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 348,550,042
Number of Sequences: 1272877
Number of extensions: 6542037
Number of successful extensions: 15027
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15026
length of database: 406,886,216
effective HSP length: 115
effective length of database: 260,505,361
effective search space used: 16672343104
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)