BLASTX 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3202900.2.1
(938 letters)
Database: /db/trembl-ebi/tmp/swall
1,272,877 sequences; 406,886,216 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sptr|Q9LIC1|Q9LIC1 Genomic DNA, chromosome 3, P1 clone:MMM17. 65 1e-09
sptr|Q9R1Q4|Q9R1Q4 Organic cation transporter (Solute carrier fa... 32 9.8
sptr|O08966|O08966 LX1. 32 9.8
>sptr|Q9LIC1|Q9LIC1 Genomic DNA, chromosome 3, P1 clone:MMM17.
Length = 368
Score = 65.5 bits (158), Expect = 1e-09
Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 5/139 (3%)
Frame = -1
Query: 755 VREFGFLSMGHEFDSYPKGRIRAPKDWNWFLEEAKR-TSDDEASGKRRSRSKVLXXXXXX 579
V EFGFL +G EFD YPK R+R K W WFLE++ SD + G ++ R +
Sbjct: 202 VAEFGFLVIGKEFDQYPKSRVRDIKQWEWFLEDSTNGNSDGDEDGDKKGRKGL--GKKRR 259
Query: 578 XXXXXXXXXXXXXXXXEKESTGRVTSVKRPKYTTRSKSSEKHSRENSKTGSGRSI----X 411
+KE + V P Y+TRSK ++K S +S + +G
Sbjct: 260 RKKGNEDDDWSVESDEDKELMVKSKRVVTPTYSTRSKKTKKDSNASSSSSNGAQTKQRGR 319
Query: 410 XXXXXXXXXXXTLGGFLVN 354
TLGGF+V+
Sbjct: 320 ADVEEEDDDDETLGGFIVS 338
>sptr|Q9R1Q4|Q9R1Q4 Organic cation transporter (Solute carrier
family 22 (Organic cation transporter), member 1)
(SLC22A1).
Length = 556
Score = 32.3 bits (72), Expect = 9.8
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = +3
Query: 408 FVDTSATSSLRVFPTMFF*AFRSCRILWS---LHTGNSSRGLFFILTLTSPVFIFAFSIF 578
F D T SLR + + SC +L+ +H G + L+ +S V A F
Sbjct: 335 FADLFRTPSLRKHTLILMYLWFSCAVLYQGLIMHVGATGANLYLDFFYSSLVEFPA--AF 392
Query: 579 LLLVPSQNFRSRSPLAASFIVRGPLCFL 662
++LV P+AAS +V G C L
Sbjct: 393 IILVTIDRIGRIYPIAASNLVAGAACLL 420
>sptr|O08966|O08966 LX1.
Length = 556
Score = 32.3 bits (72), Expect = 9.8
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = +3
Query: 408 FVDTSATSSLRVFPTMFF*AFRSCRILWS---LHTGNSSRGLFFILTLTSPVFIFAFSIF 578
F D T SLR + + SC +L+ +H G + L+ +S V A F
Sbjct: 335 FADLFRTPSLRKHTLILMYLWFSCAVLYQGLIMHVGATGANLYLDFFYSSLVEFPA--AF 392
Query: 579 LLLVPSQNFRSRSPLAASFIVRGPLCFL 662
++LV P+AAS +V G C L
Sbjct: 393 IILVTIDRIGRIYPIAASNLVAGAACLL 420
Database: /db/trembl-ebi/tmp/swall
Posted date: Sep 26, 2003 8:29 PM
Number of letters in database: 406,886,216
Number of sequences in database: 1,272,877
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,316,694
Number of Sequences: 1272877
Number of extensions: 9467478
Number of successful extensions: 24557
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24541
length of database: 406,886,216
effective HSP length: 122
effective length of database: 251,595,222
effective search space used: 47803092180
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)