BLASTX 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 3067043.2.1 (834 letters) Database: /db/trembl-ebi/tmp/swall 1,165,242 sequences; 374,381,506 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sptr|Q9S7H4|Q9S7H4 Chorismate mutase (EC 5.4.99.5) (Putative cho... 191 7e-48 sptr|Q9C544|Q9C544 Chorismate mutase, putative (Putative chorism... 181 8e-45 sptr|Q9XF60|Q9XF60 Chorismate mutase 3. 178 8e-44 sptr|Q93Y60|Q93Y60 Putative chorismate mutase. 177 2e-43 sw|P42738|CHMU_ARATH Chorismate mutase, chloroplast precursor (E... 175 7e-43 sptr|Q9STB2|Q9STB2 Chorimate mutase (EC 5.4.99.5). 173 3e-42 sw|P32178|CHMU_YEAST Chorismate mutase (EC 5.4.99.5) (CM). 127 2e-28 sptr|O65861|O65861 Chorismate mutase (Fragment). 116 4e-25 sptrnew|EAA32739|EAA32739 Hypothetical protein. 114 2e-24 sptr|Q9Y7B2|Q9Y7B2 Chorismate mutase (EC 5.4.99.5). 110 3e-23 sptr|Q9P4D8|Q9P4D8 Chorismate mutase (EC 5.4.99.5). 108 6e-23 sw|O13739|CHMU_SCHPO Probable chorismate mutase (EC 5.4.99.5) (CM). 106 4e-22 sptr|Q96VZ8|Q96VZ8 Chorismate mutase. 102 8e-21 sptr|O22410|O22410 Cytosolic chorismate mutase 2 (Fragment). 99 5e-20 sptr|O22409|O22409 Plastidic chorismate mutase 1 (Fragment). 73 5e-12 sptr|Q8I748|Q8I748 Retinoid X receptor. 34 2.6 sptr|Q8N775|Q8N775 Hypothetical protein FLJ25965. 32 9.8
>sptr|Q9S7H4|Q9S7H4 Chorismate mutase (EC 5.4.99.5) (Putative chorismate mutase CM2). Length = 265 Score = 191 bits (486), Expect = 7e-48 Identities = 99/197 (50%), Positives = 125/197 (63%), Gaps = 3/197 (1%) Frame = +3 Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182 E E + AK Y+ PE+ PFF +++P +FPT P LHP A V +N IW +YF EL Sbjct: 71 ETEIIQAKVGRYEYPEENPFFLENIPHSVFPTHKYPSALHPKALSVNINKQIWDIYFKEL 130 Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNS 362 LPLF GDDG+Y T A DLACLQ LS+RIH GK+VAEVKF+DAPQ+Y I+ +D + Sbjct: 131 LPLFVKPGDDGNYPSTAASDLACLQALSRRIHYGKFVAEVKFRDAPQDYEPAIRAQDREA 190 Query: 363 LMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLDDNATAGD---SECKVDPKVLSKLYDQWV 533 LM +LTF TFGQ V N+ GD + KVDP + S++Y +W+ Sbjct: 191 LMKLLTFEKVEEMVKKRVQKKAETFGQEVKF--NSGYGDESKKKYKVDPLLASRIYGEWL 248 Query: 534 MPLTKDVEVEYLLRRLD 584 +PLTK VEVEYLLRRLD Sbjct: 249 IPLTKLVEVEYLLRRLD 265 >sptr|Q9C544|Q9C544 Chorismate mutase, putative (Putative chorismate mutase, 16810-15349) (At1g69370). Length = 316 Score = 181 bits (460), Expect = 8e-45 Identities = 85/194 (43%), Positives = 116/194 (59%) Frame = +3 Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182 E E L+AK Y+ P++ PFFPQ LP P+ P P+VLH A + +N +W MYF L Sbjct: 123 ETEKLHAKVDRYKSPDEHPFFPQCLPEPILPPIQYPQVLHRCAESININKKVWNMYFKHL 182 Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNS 362 LP GDDG+ D CLQ+LS+RIH GK+VAE KF++ P Y IKE+D Sbjct: 183 LPRLVKPGDDGNCGSAALCDTMCLQILSKRIHFGKFVAEAKFRENPAAYETAIKEQDRTQ 242 Query: 363 LMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLDDNATAGDSECKVDPKVLSKLYDQWVMPL 542 LM +LT+ FGQ++T++D T D K+ P +++KLY + +MPL Sbjct: 243 LMQLLTYETVEEVVKKRVEIKARIFGQDITINDPETEADPSYKIQPSLVAKLYGERIMPL 302 Query: 543 TKDVEVEYLLRRLD 584 TK+V++EYLLRRLD Sbjct: 303 TKEVQIEYLLRRLD 316 >sptr|Q9XF60|Q9XF60 Chorismate mutase 3. Length = 316 Score = 178 bits (451), Expect = 8e-44 Identities = 83/194 (42%), Positives = 116/194 (59%) Frame = +3 Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182 E E L+AK Y+ P++ PFFPQ LP P+ P P+VLH A + +N +W MYF L Sbjct: 123 ETEKLHAKVDRYKSPDEHPFFPQCLPEPILPPIQYPQVLHRCAESININKKVWNMYFKHL 182 Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNS 362 LP GDDG+ D CLQ+LS+RIH+ K+VA+ KF++ P Y IKE+D Sbjct: 183 LPRLVKPGDDGNCGSAALCDTMCLQILSKRIHLRKFVADAKFRENPAAYETAIKEQDRTQ 242 Query: 363 LMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLDDNATAGDSECKVDPKVLSKLYDQWVMPL 542 LM +LT+ FGQ++T++D T D K+ P +++KLY + +MPL Sbjct: 243 LMQLLTYETVEEVVKKRVEIKARIFGQDITINDPETEADPSYKIQPSLVAKLYGERIMPL 302 Query: 543 TKDVEVEYLLRRLD 584 TK+V++EYLLRRLD Sbjct: 303 TKEVQIEYLLRRLD 316 >sptr|Q93Y60|Q93Y60 Putative chorismate mutase. Length = 294 Score = 177 bits (448), Expect = 2e-43 Identities = 85/194 (43%), Positives = 114/194 (58%) Frame = +3 Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182 E E L+ + Y+ P++ PFFP+DLP PL P PKVLHP A + +N IWKMYFDEL Sbjct: 101 ETEKLHQQVGRYKSPDEHPFFPEDLPEPLLPPLQYPKVLHPIADSININKEIWKMYFDEL 160 Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNS 362 LP +G DG+Y + D CLQ LS+RIH GK+VAE KF+++P+ Y I +D + Sbjct: 161 LPRLVKEGSDGNYGSSALCDTICLQALSKRIHYGKFVAEAKFQESPEAYMPAIIAQDCDQ 220 Query: 363 LMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLDDNATAGDSECKVDPKVLSKLYDQWVMPL 542 LM +LT+ FGQ V L K+ P ++++LY +MPL Sbjct: 221 LMHLLTYETVERAIEHRVEAKAKIFGQEVDLGAEDNGAPPMYKIRPSLVAELYSYRIMPL 280 Query: 543 TKDVEVEYLLRRLD 584 TK+V+V YLLRRLD Sbjct: 281 TKEVQVAYLLRRLD 294 >sw|P42738|CHMU_ARATH Chorismate mutase, chloroplast precursor (EC 5.4.99.5) (CM-1). Length = 334 Score = 175 bits (443), Expect = 7e-43 Identities = 87/199 (43%), Positives = 115/199 (57%), Gaps = 7/199 (3%) Frame = +3 Query: 9 EALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDELLP 188 E L+AK ++ P++ PFFP DLP P+ P PKVLH A + +N IW MYF +L+P Sbjct: 136 EKLHAKVGRFKSPDEHPFFPDDLPEPMLPPLQYPKVLHFAADSININKKIWNMYFRDLVP 195 Query: 189 LFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNSLM 368 GDDG+Y T D CLQ LS+RIH GK+VAE KF+ +P+ Y IK +D ++LM Sbjct: 196 RLVKKGDDGNYGSTAVCDAICLQCLSKRIHYGKFVAEAKFQASPEAYESAIKAQDKDALM 255 Query: 369 DMLTFXXXXXXXXXXXXXXXXTFGQNVTLDDNATAGDSE-------CKVDPKVLSKLYDQ 527 DMLTF T+GQ V + + E K+ P ++ LY Sbjct: 256 DMLTFPTVEDAIKKRVEMKTRTYGQEVKVGMEEKEEEEEEGNESHVYKISPILVGDLYGD 315 Query: 528 WVMPLTKDVEVEYLLRRLD 584 W+MPLTK+V+VEYLLRRLD Sbjct: 316 WIMPLTKEVQVEYLLRRLD 334 >sptr|Q9STB2|Q9STB2 Chorimate mutase (EC 5.4.99.5). Length = 255 Score = 173 bits (438), Expect = 3e-42 Identities = 91/195 (46%), Positives = 122/195 (62%), Gaps = 1/195 (0%) Frame = +3 Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182 E E+L +K Y PE+ PFFP +L + P VLHP A V VN+ I +Y +++ Sbjct: 63 ETESLQSKVGRYLAPEENPFFPDNLSDSIIPLTKCTPVLHPAAESVNVNEKILDIYINQM 122 Query: 183 LPLFTVD-GDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSN 359 LPLF + DD ++A T A D+ LQ LS+RIH GK+VAEVKF+D+ EY I +D + Sbjct: 123 LPLFCTEVNDDANFATTAACDIQLLQALSRRIHYGKFVAEVKFRDSIDEYKPFILAQDRD 182 Query: 360 SLMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLDDNATAGDSECKVDPKVLSKLYDQWVMP 539 +LM +LTF FGQ V+L+DNA + + K+DP ++S+LYD+WVMP Sbjct: 183 ALMKLLTFEAVEEMVKKRVAKKAKVFGQEVSLNDNAE--EVKGKIDPLLVSRLYDEWVMP 240 Query: 540 LTKDVEVEYLLRRLD 584 LTK VEVEYLLRRLD Sbjct: 241 LTKLVEVEYLLRRLD 255 >sw|P32178|CHMU_YEAST Chorismate mutase (EC 5.4.99.5) (CM). Length = 256 Score = 127 bits (319), Expect = 2e-28 Identities = 68/194 (35%), Positives = 108/194 (55%), Gaps = 2/194 (1%) Frame = +3 Query: 9 EALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDELLP 188 E +++ ++ P++ PFFP + P+ P++L P+A V ND I K+Y ++++P Sbjct: 68 EIAHSRIRRFESPDETPFFPDKIQKSFLPSINYPQILAPYAPEVNYNDKIKKVYIEKIIP 127 Query: 189 LFTV-DGDD-GSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNS 362 L + DGDD ++ D+ CLQ LS+RIH GK+VAE KF+ Y++LIK KD Sbjct: 128 LISKRDGDDKNNFGSVATRDIECLQSLSRRIHFGKFVAEAKFQSDIPLYTKLIKSKDVEG 187 Query: 363 LMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLDDNATAGDSECKVDPKVLSKLYDQWVMPL 542 +M +T +G + T + E ++ P+ L K+Y + V+P+ Sbjct: 188 IMKNITNSAVEEKILERLTKKAEVYGVDPTNE------SGERRITPEYLVKIYKEIVIPI 241 Query: 543 TKDVEVEYLLRRLD 584 TK+VEVEYLLRRL+ Sbjct: 242 TKEVEVEYLLRRLE 255 >sptr|O65861|O65861 Chorismate mutase (Fragment). Length = 131 Score = 116 bits (290), Expect = 4e-25 Identities = 49/122 (40%), Positives = 74/122 (60%) Frame = +3 Query: 18 NAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDELLPLFT 197 + + Y P++ PFFP P P+ P P+VLHP A+ + +N +W+MYF ++LP Sbjct: 2 HGQVGRYSSPDEHPFFPHVPPEPVLPPLHYPQVLHPIANSININHKVWEMYFRDILPRLV 61 Query: 198 VDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNSLMDML 377 +GDDG++ T D CLQ LS+RIH GK+V E KF+ P+ Y I E++ +M +L Sbjct: 62 KEGDDGNFGSTAVCDTMCLQALSKRIHYGKFVGECKFRSNPKSYEAAIIEQNREKVMGLL 121 Query: 378 TF 383 T+ Sbjct: 122 TY 123 >sptrnew|EAA32739|EAA32739 Hypothetical protein. Length = 269 Score = 114 bits (284), Expect = 2e-24 Identities = 63/201 (31%), Positives = 112/201 (55%), Gaps = 7/201 (3%) Frame = +3 Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182 + E L + Y+ P++ PFFP + P+ + P++LHP + V VND I + Y + Sbjct: 68 QQERLQSLMRRYESPDEYPFFPDAVQKPILESIDYPQILHP--NNVNVNDQIKEFYTQKF 125 Query: 183 LPLFTVD---GDDG----SYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLI 341 LP D D G +Y + D+ACLQ +S+RIH GK+VAE KF+ +++++ I Sbjct: 126 LPSVCPDFGREDRGVNKENYGSSATCDIACLQAISRRIHFGKFVAESKFQSETEKFTKYI 185 Query: 342 KEKDSNSLMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLDDNATAGDSECKVDPKVLSKLY 521 + D ++ + +T T+G + ++ A+ +S+ K++ + + +Y Sbjct: 186 QAGDREAIGEAITNQAVEKKVLERLKLKAETYGTDPSI--GASEAESQRKINVEAVVAMY 243 Query: 522 DQWVMPLTKDVEVEYLLRRLD 584 +++V+PLTK VEVEYL++RL+ Sbjct: 244 EEFVIPLTKVVEVEYLMQRLE 264 >sptr|Q9Y7B2|Q9Y7B2 Chorismate mutase (EC 5.4.99.5). Length = 267 Score = 110 bits (274), Expect = 3e-23 Identities = 68/201 (33%), Positives = 100/201 (49%), Gaps = 8/201 (3%) Frame = +3 Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182 E E L ++ YQ P++ PFFP L P+ PK+LH + V VN+ I Y ++ Sbjct: 68 ETERLQSRVRRYQSPDEYPFFPSALEKPILQPLDYPKILHD--NDVNVNETIKTRYVQDI 125 Query: 183 LPL----FTVDGDDG----SYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRL 338 LP F D G +Y D++CLQ LS+RIH GK+VAE KF+ +++ L Sbjct: 126 LPAICPQFGGREDRGETQENYGSAATCDVSCLQALSRRIHFGKFVAESKFQKETEKFVAL 185 Query: 339 IKEKDSNSLMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLDDNATAGDSECKVDPKVLSKL 518 IK D + + +T T+G D S K+D + + + Sbjct: 186 IKAGDRKEIDEAITDAKVEQKVLERLALKAKTYG-----TDPGFPEQSGPKIDVQAVQDM 240 Query: 519 YDQWVMPLTKDVEVEYLLRRL 581 Y ++V+PLTK VEVEYL++RL Sbjct: 241 YKEYVIPLTKVVEVEYLMQRL 261 >sptr|Q9P4D8|Q9P4D8 Chorismate mutase (EC 5.4.99.5). Length = 280 Score = 108 bits (271), Expect = 6e-23 Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 2/194 (1%) Frame = +3 Query: 9 EALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDELLP 188 E ++++ Y P++VPFFP L P P VL +A + VN I K+Y E++P Sbjct: 66 ERIHSQVRRYDAPDEVPFFPNVLEKTFLPKINYPSVLASYADEINVNKEILKIYTSEIVP 125 Query: 189 LFTVDG--DDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNS 362 + + D+ CLQ LS+RIH G++VAE KF + LIK++D Sbjct: 126 GIAAGSGEQEDNLGSCAMADIECLQSLSRRIHFGRFVAEAKFISEGDKIVDLIKKRDVEG 185 Query: 363 LMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLDDNATAGDSECKVDPKVLSKLYDQWVMPL 542 + ++T +G + TL + KV P+V+ K+Y +V+PL Sbjct: 186 IEALITNAEVEKRILDRLLEKGRAYGTDPTL---KFTQHIQSKVKPEVIVKIYKDFVIPL 242 Query: 543 TKDVEVEYLLRRLD 584 TK VEV+YLLRRL+ Sbjct: 243 TKKVEVDYLLRRLE 256 >sw|O13739|CHMU_SCHPO Probable chorismate mutase (EC 5.4.99.5) (CM). Length = 251 Score = 106 bits (264), Expect = 4e-22 Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 1/194 (0%) Frame = +3 Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182 E E + A Y PE+ PF +LP P+ P LHP + V VN I + Y +E+ Sbjct: 65 EEEKVYALVRRYASPEEYPF-TDNLPEPILPKFSGKFPLHP--NNVNVNSEILEYYINEI 121 Query: 183 LPLFTVDGDD-GSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSN 359 +P + GDD +Y TV D+ CLQ LS+RIH GK+VAE K+ P++Y +LI +D Sbjct: 122 VPKISSPGDDFDNYGSTVVCDIRCLQSLSRRIHYGKFVAEAKYLANPEKYKKLILARDIK 181 Query: 360 SLMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLDDNATAGDSECKVDPKVLSKLYDQWVMP 539 + + + +G+ D A +++ ++ +Y +V+P Sbjct: 182 GIENEIVDAAQEERVLKRLHYKALNYGR-----DAADPTKPSDRINADCVASIYKDYVIP 236 Query: 540 LTKDVEVEYLLRRL 581 +TK VEV+YLL RL Sbjct: 237 MTKKVEVDYLLARL 250 >sptr|Q96VZ8|Q96VZ8 Chorismate mutase. Length = 295 Score = 102 bits (253), Expect = 8e-21 Identities = 68/212 (32%), Positives = 101/212 (47%), Gaps = 18/212 (8%) Frame = +3 Query: 3 EAEALNAKAXHYQKPEDVPFFPQD-LPSPLFPTKPSPKVLHPFASL---VTVNDAIWKMY 170 E E +AKA + P++ PF P D LP P+ + P +L+ AS V VN I + Y Sbjct: 68 ETETFHAKARRFTSPDEHPFTPLDRLPQPILKPQKFPTLLYEPASTHPSVNVNSRILRFY 127 Query: 171 FDELLPLFTVDG-------DDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEY 329 + ++P T G DDG+Y + D+ LQ LS+RIH G +V+E KF AP + Sbjct: 128 VEHIVPGITGAGKGKTESEDDGNYGSSATRDVEVLQALSRRIHFGMFVSESKFLAAPHNF 187 Query: 330 --SRLIKEKDSNSLMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLDDNATAGDSE-----C 488 L ++ +L ++T +G + +D E Sbjct: 188 IPHILASPPNTEALAGLITKPAVEAKLLVRLANKARVYGCEMDVDGRLIEVPDEEMGARG 247 Query: 489 KVDPKVLSKLYDQWVMPLTKDVEVEYLLRRLD 584 K+D + +Y WV+PLTKDVEV+YL+ RLD Sbjct: 248 KIDLASVVGMYKDWVIPLTKDVEVDYLIHRLD 279 >sptr|O22410|O22410 Cytosolic chorismate mutase 2 (Fragment). Length = 82 Score = 99.4 bits (246), Expect = 5e-20 Identities = 43/82 (52%), Positives = 57/82 (69%) Frame = +3 Query: 60 FFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDELLPLFTVDGDDGSYAQTVAL 239 F P +LPS L P P++LHP A+ + +N+ IW Y ++LLPLFT +GDDG+Y T Sbjct: 1 FDPDNLPSSLLPQYNHPQILHPTAAAININETIWDAYVNQLLPLFTTEGDDGNYVPTATS 60 Query: 240 DLACLQVLSQRIHIGKYVAEVK 305 DL CLQ +S+RIH GK+VAE K Sbjct: 61 DLQCLQAISRRIHYGKFVAEAK 82 >sptr|O22409|O22409 Plastidic chorismate mutase 1 (Fragment). Length = 70 Score = 72.8 bits (177), Expect = 5e-12 Identities = 31/70 (44%), Positives = 41/70 (58%) Frame = +3 Query: 66 PQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDELLPLFTVDGDDGSYAQTVALDL 245 P+ LP P+ P P+VLHP + +N IW MYF L+P +G+DG+Y T D Sbjct: 1 PEHLPEPISPPLQYPQVLHPVTESININSKIWDMYFRNLVPRLVKEGEDGNYGATAVCDT 60 Query: 246 ACLQVLSQRI 275 CLQ LS+RI Sbjct: 61 ICLQALSKRI 70 >sptr|Q8I748|Q8I748 Retinoid X receptor. Length = 548 Score = 33.9 bits (76), Expect = 2.6 Identities = 20/54 (37%), Positives = 27/54 (50%) Frame = +3 Query: 45 PEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDELLPLFTVDG 206 P +P+FPQ SP T P P++L AS + + KM FD P+ T G Sbjct: 254 PPSIPYFPQSYDSP---TSPVPRMLSHAASRMYGSLPNLKMEFDRSTPMSTPTG 304 >sptr|Q8N775|Q8N775 Hypothetical protein FLJ25965. Length = 439 Score = 32.0 bits (71), Expect = 9.8 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +3 Query: 18 NAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFAS 134 N A HY K + FP +P P PT+ +LHP S Sbjct: 257 NLPASHYYKYKQQFIFPDVVPVPETPTRAPQVILHPVTS 295 Database: /db/trembl-ebi/tmp/swall Posted date: Jul 11, 2003 8:27 PM Number of letters in database: 374,381,506 Number of sequences in database: 1,165,242 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 548,830,755 Number of Sequences: 1165242 Number of extensions: 11262047 Number of successful extensions: 30089 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 28317 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 30014 length of database: 374,381,506 effective HSP length: 120 effective length of database: 234,552,466 effective search space used: 36824737162 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
S1: 41 (21.7 bits)