BLASTX 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023309.2.1
(1096 letters)
Database: /db/uniprot/tmp/swall
1,395,590 sequences; 442,889,342 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sptr|Q94GW0|Q94GW0 Putative small nuclear ribonucleoprotein U1A. 385 e-106
sptr|Q41498|Q41498 U1snRNP-specific protein, U1A. 311 1e-83
sptr|Q39244|Q39244 U1SNRNP-specific protein (Small nuclear ribon... 304 1e-81
sptr|O22922|O22922 Putative small nuclear ribonucleoprotein U2B ... 237 2e-61
sptr|Q8LB63|Q8LB63 Putative small nuclear ribonucleoprotein U2B. 235 1e-60
sptr|Q41499|Q41499 Spliceosomal protein. 229 7e-59
sptr|Q9LMJ0|Q9LMJ0 F10K1.32 protein. 227 2e-58
sptr|Q8H1S6|Q8H1S6 Putative spliceosomal protein (U2B). 226 6e-58
sptr|Q8RXP9|Q8RXP9 Putative spliceosomal protein (U2B). 225 8e-58
sw|P09012|RU1A_HUMAN U1 small nuclear ribonucleoprotein A (U1 sn... 196 7e-49
sptr|Q7ZXI5|Q7ZXI5 Hypothetical protein. 191 2e-47
sw|P45429|RU1A_XENLA U1 small nuclear ribonucleoprotein A (U1 sn... 191 2e-47
sptr|Q9CQI7|Q9CQI7 2810052G09Rik protein (U2 small nuclear ribon... 189 5e-47
sw|Q62189|RU1A_MOUSE U1 small nuclear ribonucleoprotein A (U1 sn... 189 8e-47
sptr|Q9CZ66|Q9CZ66 2810052G09Rik protein. 188 1e-46
sptrnew|AAH64308|AAH64308 Hypothetical protein wu:fc19d01. 187 3e-46
sw|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B". 186 5e-46
sptrnew|AAH59527|AAH59527 Hypothetical protein (Fragment). 186 7e-46
sptr|Q9CXX7|Q9CXX7 Small nuclear ribonucleoprotein polypeptide A. 185 1e-45
sptr|Q7PYY3|Q7PYY3 AgCP9692 (Fragment). 184 3e-45
sw|P43332|RU1A_DROME U1 small nuclear ribonucleoprotein A (U1 sn... 182 1e-44
sptr|Q21322|Q21322 Hypothetical protein. 153 5e-36
sptr|Q21323|Q21323 Hypothetical protein. 148 2e-34
sptr|O74968|O74968 Small nuclear ribonucleoprotein. 134 3e-30
sptr|Q7RQA6|Q7RQA6 Hypothetical protein (Fragment). 117 2e-25
sptrnew|CAE85534|CAE85534 Related to small nuclear ribonucleopro... 116 7e-25
sptr|Q7SAK7|Q7SAK7 Hypothetical protein. 116 7e-25
sptr|Q8IEP6|Q8IEP6 U1 small nuclear ribonucleoprotein a, putative. 112 1e-23
sptr|Q86YK2|Q86YK2 Similar to small nuclear ribonucleoprotein po... 110 4e-23
sptr|Q8I2G9|Q8I2G9 Small nuclear ribonucleoprotein (snRNP), puta... 107 4e-22
>sptr|Q94GW0|Q94GW0 Putative small nuclear ribonucleoprotein U1A.
Length = 253
Score = 385 bits (989), Expect = e-106
Identities = 193/236 (81%), Positives = 205/236 (86%)
Frame = +2
Query: 119 PPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 298
PPNVTIY SL AVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT
Sbjct: 20 PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79
Query: 299 EALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDA 478
EALK MQ FPF++K MRIQYAKTKSDIIAKADGTFVPRERRKR DEK EKKQKRE HHD
Sbjct: 80 EALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDV 139
Query: 479 GASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQM 658
SQ+G+GV AYPGVYGAP L+Q+P AG Q+VMMPEIIVPNNILFVQNLPHETTPMMLQM
Sbjct: 140 --SQVGLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQM 197
Query: 659 LFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
LFCQYPGFKEVRM+EAKPGIAFVEYGDE QATAAMN+LQ FKITK+NQM+I+YAKK
Sbjct: 198 LFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253
>sptr|Q41498|Q41498 U1snRNP-specific protein, U1A.
Length = 253
Score = 311 bits (797), Expect = 1e-83
Identities = 160/239 (66%), Positives = 187/239 (78%), Gaps = 3/239 (1%)
Frame = +2
Query: 119 PPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 298
PPNVTIY S+ AVFSQFGKIL+VLAFKTLKHKGQAWVVFE+V+SA+
Sbjct: 20 PPNVTIYINNLNEKIKLEELKKSMHAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSSAS 79
Query: 299 EALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDA 478
AL++MQGFPFYDK MRIQYAKTKSD++AKADGTFVPRE+RKR ++K KK+ ++
Sbjct: 80 NALRQMQGFPFYDKPMRIQYAKTKSDVVAKADGTFVPREKRKRHEDKGRKKKDQQ----- 134
Query: 479 GASQIGMGVT-AYPGVYG-APQLTQIPIAGGQRVMMPEI-IVPNNILFVQNLPHETTPMM 649
++Q GMG+ AY G YG AP +QIP GG + +PE PN+ILFVQNLPH++TPMM
Sbjct: 135 DSNQAGMGLNPAYAGAYGAAPPFSQIPYMGGAKAAVPEAPAPPNSILFVQNLPHQSTPMM 194
Query: 650 LQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
LQMLFCQYPGFKEVRMIEAKPGIAF+EYGDE Q+T AM LQ FKIT EN M+ITYAKK
Sbjct: 195 LQMLFCQYPGFKEVRMIEAKPGIAFIEYGDEMQSTVAMQALQGFKITAENPMLITYAKK 253
>sptr|Q39244|Q39244 U1SNRNP-specific protein (Small nuclear
ribonucleoprotein U1A) (AT2G47580/T30B22.12).
Length = 250
Score = 304 bits (779), Expect = 1e-81
Identities = 157/240 (65%), Positives = 186/240 (77%), Gaps = 3/240 (1%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ PN TIY SL AVFSQFGKIL++LAFKT KHKGQAWVVF++ SA
Sbjct: 14 VSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESA 73
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ A+ +M FPFYDK MRIQYAKTKSD++AKADGTFVPRE+RKR +EK K+K++ HHD
Sbjct: 74 STAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHHD 133
Query: 476 AGASQIGMGV-TAYPGVYG-APQLTQIPIAGGQRVMMPEI-IVPNNILFVQNLPHETTPM 646
++Q+GM + +AYPGVYG AP L+Q+P GG + MPE PNNILFVQNLPHETTPM
Sbjct: 134 --STQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPM 191
Query: 647 MLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+LQMLFCQY GFKEVRMIEAKPGIAFVE+ DE Q+T AM LQ FKI ++NQM+ITYAKK
Sbjct: 192 VLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKI-QQNQMLITYAKK 250
>sptr|O22922|O22922 Putative small nuclear ribonucleoprotein U2B
(At2g30260).
Length = 232
Score = 237 bits (605), Expect = 2e-61
Identities = 126/237 (53%), Positives = 161/237 (67%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG+ILDV+A KT K +GQAWV F +V +A
Sbjct: 6 IPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAA 65
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
A+++MQ FPFYDK MR+QYAK KSD +AKA+GTFVP++++++ +EK E+K++ +
Sbjct: 66 GHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRPN 125
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
G +A GV AP GQ E + PNNILF+QNLPHETT MMLQ
Sbjct: 126 TANGPSANGPSANNGV-PAPSFQ----PSGQ-----ETMPPNNILFIQNLPHETTSMMLQ 175
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+LF QYPGFKE+RMI+AKPGIAFVEY D+ QA+ AM LQ FKIT +N MVI++AKK
Sbjct: 176 LLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
>sptr|Q8LB63|Q8LB63 Putative small nuclear ribonucleoprotein U2B.
Length = 232
Score = 235 bits (599), Expect = 1e-60
Identities = 125/237 (52%), Positives = 160/237 (67%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG+ILDV+A KT K +GQAWV F +V +A
Sbjct: 6 IPPNHSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAA 65
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
A+++MQ FP YDK MR+QYAK KSD +AKA+GTFVP++++++ +EK E+K++ +
Sbjct: 66 GHAVRQMQNFPXYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREESQRPN 125
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
G +A GV AP GQ E + PNNILF+QNLPHETT MMLQ
Sbjct: 126 TANGPSANGPSANNGV-PAPSFQ----PSGQ-----ETMPPNNILFIQNLPHETTSMMLQ 175
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+LF QYPGFKE+RMI+AKPGIAFVEY D+ QA+ AM LQ FKIT +N MVI++AKK
Sbjct: 176 LLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
>sptr|Q41499|Q41499 Spliceosomal protein.
Length = 231
Score = 229 bits (583), Expect = 7e-59
Identities = 123/237 (51%), Positives = 162/237 (68%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN TIY SL +FSQ+G+I+D++A KT K +GQ+WVVF +V +A
Sbjct: 7 IPPNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRIVDIVALKTPKLRGQSWVVFSEVTAA 66
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ A+++MQ FPFYDK MRIQYAK+KSD IAKA+GT+ +++K+ DEK EK+++ E
Sbjct: 67 SNAVRQMQNFPFYDKPMRIQYAKSKSDCIAKAEGTY---DKKKKQDEKVEKRKRTEETPQ 123
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
GA+ G + G A + + P A ++ PNNILF+QNLPHETT MML+
Sbjct: 124 TGAAN-GPRTDSNGGPAAASRQGK-PSA-------QDVAEPNNILFIQNLPHETTSMMLE 174
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+LF QYPGF+EVRMIEAKPGIAFVE+ D+ Q++ AM LQ FKIT +N M ITYAKK
Sbjct: 175 VLFKQYPGFREVRMIEAKPGIAFVEFDDDVQSSVAMQALQGFKITPQNPMAITYAKK 231
>sptr|Q9LMJ0|Q9LMJ0 F10K1.32 protein.
Length = 247
Score = 227 bits (579), Expect = 2e-58
Identities = 123/249 (49%), Positives = 162/249 (65%), Gaps = 12/249 (4%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG++LDV+A KT K +GQAWVVF +V +A
Sbjct: 6 IPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAA 65
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ A+++MQ FPFYDK MRIQYAK+KSD + KA+G+FVP+E++ + +EK E+K+ H +
Sbjct: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKR---HAEE 122
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQI------------PIAGGQRVMMPEIIVPNNILFVQ 619
+ G T G+ A L++I P + MP PNNILF+
Sbjct: 123 TQQPSMPNGATTQNGMPVAISLSRIIPTIQYYLLTDPPFQPSGQDTMP----PNNILFIH 178
Query: 620 NLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKEN 799
NLP ET MMLQ+LF QYPGFKE+RMIEAKPGIAFVEY D+ Q++ AM LQ FKIT +N
Sbjct: 179 NLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQN 238
Query: 800 QMVITYAKK 826
MV+++AKK
Sbjct: 239 PMVVSFAKK 247
>sptr|Q8H1S6|Q8H1S6 Putative spliceosomal protein (U2B).
Length = 229
Score = 226 bits (575), Expect = 6e-58
Identities = 121/237 (51%), Positives = 157/237 (66%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG++LDV+A KT K +GQAWVVF +V +A
Sbjct: 6 IPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAA 65
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ A+++MQ FPFYDK MRIQYAK+KSD + KA+G+FVP+E++ + +EK E+K+ H +
Sbjct: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKR---HAEE 122
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
+ G T G+ P GQ M PNNILF+ NLP ET MMLQ
Sbjct: 123 TQQPSMPNGATTQNGMPVPPFQ-----PSGQDTM-----PPNNILFIHNLPIETNSMMLQ 172
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+LF QYPGFKE+RMIEAKPGIAFVEY D+ Q++ AM LQ FKIT +N MV+++AKK
Sbjct: 173 LLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229
>sptr|Q8RXP9|Q8RXP9 Putative spliceosomal protein (U2B).
Length = 228
Score = 225 bits (574), Expect = 8e-58
Identities = 120/237 (50%), Positives = 156/237 (65%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG++LDV+A KT K +GQAWVVF +V +A
Sbjct: 6 IPPNQSIYIKHISEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAA 65
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ A+++MQ FPFYDK MRIQYAK+KSD + KA+G+FVP+E++ + +EK E+K+ H +
Sbjct: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKR---HAEE 122
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
+ G T G+ P + MP PNNILF+ NLP ET MMLQ
Sbjct: 123 TQQPSMPNGATTQNGM-------PPPFQPSGQDTMP----PNNILFIHNLPIETNSMMLQ 171
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+LF QYPGFKE+RMIEAKPGIAFVEY D+ Q++ AM LQ FKIT N MV+++AKK
Sbjct: 172 LLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPRNPMVVSFAKK 228
>sw|P09012|RU1A_HUMAN U1 small nuclear ribonucleoprotein A (U1 snRNP
protein A) (U1A protein) (U1-A).
Length = 282
Score = 196 bits (497), Expect = 7e-49
Identities = 122/277 (44%), Positives = 160/277 (57%), Gaps = 42/277 (15%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FSQFG+ILD+L ++LK +GQA+V+F++V+SAT
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERR--KRTDEKSEKKQKREHHHD 475
AL+ MQGFPFYDK MRIQYAKT SDIIAK GTFV R+R+ KR + E ++
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQG 127
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIP-----------------------IAGGQ---RVM 577
GA+ + +G P V G P +TQ P +A GQ M
Sbjct: 128 GGATPV-VGAVQGP-VPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAM 185
Query: 578 MPEIIV--------------PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPG 715
P+ ++ PN+ILF+ NLP ET +ML MLF Q+PGFKEVR++ +
Sbjct: 186 PPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHD 245
Query: 716 IAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
IAFVE+ +E QA AA + LQ FKIT+ N M I++AKK
Sbjct: 246 IAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>sptr|Q7ZXI5|Q7ZXI5 Hypothetical protein.
Length = 282
Score = 191 bits (484), Expect = 2e-47
Identities = 121/283 (42%), Positives = 154/283 (54%), Gaps = 46/283 (16%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ PN TIY SL A+FSQFG+ILD+L + LK +GQA+V+F++ +SA
Sbjct: 6 VRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKETSSA 65
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+ MQGFPFYDK MRIQY+KT SDIIAK GTFV R+R K ++K+K +
Sbjct: 66 TNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTFVERDR------KRQEKRKVKVPEV 119
Query: 476 AGASQIGMGVTAYPGVYG-------APQLTQIP----IAG-------------------- 562
G G PGV G P +TQ P +AG
Sbjct: 120 QGVKNAMPGAALLPGVPGQMAAMQNMPGMTQAPRMMHMAGQAPYMHHPGMMPPPGMAPGQ 179
Query: 563 -------------GQRVMMPEII--VPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRM 697
GQ M I PN+ILF+ NLP ET +ML MLF Q+PGFKEVR+
Sbjct: 180 MPPGGMPHGQLMPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL 239
Query: 698 IEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+ + IAFVE+ +E QA AA +LQ FKIT+ N M I++AKK
Sbjct: 240 VPGRHDIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282
>sw|P45429|RU1A_XENLA U1 small nuclear ribonucleoprotein A (U1 snRNP
protein A) (U1A protein) (U1-A).
Length = 282
Score = 191 bits (484), Expect = 2e-47
Identities = 121/283 (42%), Positives = 154/283 (54%), Gaps = 46/283 (16%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ PN TIY SL A+FSQFG+ILD+L + LK +GQA+V+F++ +SA
Sbjct: 6 VRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKETSSA 65
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+ MQGFPFYDK MRIQY+KT SDIIAK GTFV R+R K ++K+K +
Sbjct: 66 TNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTFVERDR------KRQEKRKVKVPEV 119
Query: 476 AGASQIGMGVTAYPGVYG-------APQLTQIP----IAG-------------------- 562
G G PGV G P +TQ P +AG
Sbjct: 120 QGVKNAMPGAALLPGVPGQMAAMQDMPGMTQAPRMMHMAGQAPYMHHPGMMPPPGMAPGQ 179
Query: 563 -------------GQRVMMPEII--VPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRM 697
GQ M I PN+ILF+ NLP ET +ML MLF Q+PGFKEVR+
Sbjct: 180 MPPGGMPHGQLMPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL 239
Query: 698 IEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+ + IAFVE+ +E QA AA +LQ FKIT+ N M I++AKK
Sbjct: 240 VPGRHDIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282
>sptr|Q9CQI7|Q9CQI7 2810052G09Rik protein (U2 small nuclear
ribonucleoprotein B).
Length = 225
Score = 189 bits (481), Expect = 5e-47
Identities = 108/237 (45%), Positives = 143/237 (60%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 3 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 62
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY K MRIQYAKT SDII+K GTF +E++K EKK+ +
Sbjct: 63 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK------EKKKAKTMEQA 116
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
A A+ G G P +P+ PN ILF+ NLP ET MML
Sbjct: 117 AAAANKKPG-------QGTPNAANTQGTAAPNPQVPD-YPPNYILFLNNLPEETNEMMLS 168
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+PGFKEVR++ + IAFVE+ ++ QA AA + LQ FKIT + M ITYAKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>sw|Q62189|RU1A_MOUSE U1 small nuclear ribonucleoprotein A (U1 snRNP
protein A) (U1A protein) (U1-A).
Length = 287
Score = 189 bits (479), Expect = 8e-47
Identities = 116/273 (42%), Positives = 154/273 (56%), Gaps = 39/273 (14%)
Frame = +2
Query: 125 NVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEA 304
N TIY SL A+FSQFG+ILD+L + +K +GQA+V+F++V SAT A
Sbjct: 15 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNA 74
Query: 305 LKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERR--KRTDEKSEKKQKREHHHDA 478
L+ MQGFPFYDK MRIQYAKT SDIIAK GT+V R+R+ KR + E ++
Sbjct: 75 LRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGG 134
Query: 479 GASQIGMGVTAYPGVYGAPQLTQI--------------------PIAGGQ---RVMMPEI 589
A+ + V PG+ PQ +I +A GQ M P+
Sbjct: 135 AAAPVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQ 194
Query: 590 IV--------------PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFV 727
++ PN+ILF+ NLP ET +ML MLF Q+PGFKEVR++ + IAFV
Sbjct: 195 LMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFV 254
Query: 728 EYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
E+ +E QA AA + LQ FKIT+ N M I++AKK
Sbjct: 255 EFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287
>sptr|Q9CZ66|Q9CZ66 2810052G09Rik protein.
Length = 225
Score = 188 bits (477), Expect = 1e-46
Identities = 108/237 (45%), Positives = 142/237 (59%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 3 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 62
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY K MRIQYAKT SDII+K GTF +E++K EKK+ +
Sbjct: 63 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK------EKKKAKTMEQA 116
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
A A+ G G P +P+ PN ILF+ NLP ET MML
Sbjct: 117 AAAANKKPG-------QGTPNAANTQGTAAPNPQVPD-YPPNYILFLNNLPEETNEMMLS 168
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+PGFKEVR++ + IAFVE+ + QA AA + LQ FKIT + M ITYAKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFEYDGQAGAARDALQGFKITPSHAMKITYAKK 225
>sptrnew|AAH64308|AAH64308 Hypothetical protein wu:fc19d01.
Length = 281
Score = 187 bits (474), Expect = 3e-46
Identities = 116/275 (42%), Positives = 152/275 (55%), Gaps = 41/275 (14%)
Frame = +2
Query: 125 NVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEA 304
N TIY SL A+FSQFG+ILD+L +TLK KGQA+V+F+++ SA+ A
Sbjct: 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEINSASNA 68
Query: 305 LKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGA 484
L+ MQGFPFYDK MRIQY+K SDIIAK GTFV R+R+K + + +GA
Sbjct: 69 LRSMQGFPFYDKPMRIQYSKQDSDIIAKMKGTFVERDRKKEKKKPKVPEAGAGKKGGSGA 128
Query: 485 SQIGMGVTAYPGVYGAPQLTQIP----------------------IAGGQRV-------- 574
+ GV A + G P ++Q P +A GQ
Sbjct: 129 TPAMAGVPA--AIPGMPPMSQAPRMMPMPGQPPYMPPPGMMPPPNMAPGQMPPGAMPPGG 186
Query: 575 --------MMPEII---VPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIA 721
MP+ + PN+ILF+ NLP ET +ML MLF Q+PGFKEVR++ + IA
Sbjct: 187 MMPGQMPGQMPQQVSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIA 246
Query: 722 FVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
FVE+ +E QA AA LQ FKIT+ N M I++AKK
Sbjct: 247 FVEFDNEVQAGAAREALQGFKITQSNAMKISFAKK 281
>sw|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B".
Length = 225
Score = 186 bits (472), Expect = 5e-46
Identities = 108/237 (45%), Positives = 142/237 (59%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 3 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 62
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY K MRIQYAKT SDII+K GTF +E++K EKK+ +
Sbjct: 63 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK------EKKKAKT---- 112
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
Q PG G P +P+ PN ILF+ NLP ET MML
Sbjct: 113 --VEQTATTTNKKPG-QGTPNSANTQGNSTPNPQVPD-YPPNYILFLNNLPEETNEMMLS 168
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+PGFKEVR++ + IAFVE+ ++ QA AA + LQ FKIT + M ITYAKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>sptrnew|AAH59527|AAH59527 Hypothetical protein (Fragment).
Length = 229
Score = 186 bits (471), Expect = 7e-46
Identities = 106/238 (44%), Positives = 145/238 (60%), Gaps = 1/238 (0%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG+I+D++A KT++ +GQA+V+F+++++A
Sbjct: 12 IRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFKELSAA 71
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY+K MRIQYAKT SD+++K GT+ +E++K EKK+K +
Sbjct: 72 TNALRQLQGFPFYNKPMRIQYAKTDSDLVSKMRGTYGDKEKKK------EKKKKAQEQAA 125
Query: 476 AGASQIGMG-VTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMML 652
A A++ G V P Q+ P PN ILF+ NLP ET MML
Sbjct: 126 ANANKKPAGAVNTQPPPPATVQIPDNP--------------PNYILFLNNLPEETNEMML 171
Query: 653 QMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+PGFKEVR++ K I+FVE+ E QA A + LQ F+IT M ITYAKK
Sbjct: 172 SMLFNQFPGFKEVRLVPGKHDISFVEFESEAQAGVAKDALQGFRITATCAMKITYAKK 229
>sptr|Q9CXX7|Q9CXX7 Small nuclear ribonucleoprotein polypeptide A.
Length = 287
Score = 185 bits (469), Expect = 1e-45
Identities = 116/273 (42%), Positives = 156/273 (57%), Gaps = 39/273 (14%)
Frame = +2
Query: 125 NVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEA 304
N TIY SL A+FSQFG+ILD+L + +K +GQA+V+F++V SAT A
Sbjct: 15 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNA 74
Query: 305 LKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRER-RKRTDEKSEKKQKREHHHDAG 481
L+ MQGFPFYDK MRIQYAKT SDIIAK GT+V R+R R++ KS++ + G
Sbjct: 75 LRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQVG 134
Query: 482 ASQIGMGVT-AYPGVYGAPQLTQI--------------------PIAGGQ---RVMMPEI 589
+ G++ PG+ PQ +I +A GQ M P+
Sbjct: 135 QLRPWWGLSQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQ 194
Query: 590 IV--------------PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFV 727
++ PN+ILF+ NLP ET +ML MLF Q+PGFKEVR++ + IAFV
Sbjct: 195 LMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFV 254
Query: 728 EYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
E+ +E QA AA + LQ FKIT+ N M I++AKK
Sbjct: 255 EFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287
>sptr|Q7PYY3|Q7PYY3 AgCP9692 (Fragment).
Length = 223
Score = 184 bits (466), Expect = 3e-45
Identities = 109/243 (44%), Positives = 143/243 (58%), Gaps = 6/243 (2%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG+ILD++A+KTLK +GQA+++F++++SA
Sbjct: 10 IRPNHTIYINNLNEKINKVELKKSLYAIFSQFGQILDIVAYKTLKMRGQAFIIFKEISSA 69
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKR------TDEKSEKKQK 457
T A++ MQGFPFYDK MRI+Y+KT SD+IAK GTF R +R + T++K KK K
Sbjct: 70 TNAMRTMQGFPFYDKPMRIKYSKTDSDMIAKLKGTFQERPKRVKQPKPIQTEDKKAKKLK 129
Query: 458 REHHHDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHET 637
+AG +G T P PN ILF+ NLP ET
Sbjct: 130 -----NAGE----VGATNNSATAEQP--------------------PNQILFLTNLPEET 160
Query: 638 TPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITY 817
MML MLF Q+PGFKEVR++ + IAFVE+ E Q+ AA LQ FKIT + M I++
Sbjct: 161 NEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFATELQSGAAREALQGFKITPTHAMKISF 220
Query: 818 AKK 826
AKK
Sbjct: 221 AKK 223
>sw|P43332|RU1A_DROME U1 small nuclear ribonucleoprotein A (U1 snRNP
protein A) (U1-A) (Sex determination protein snf).
Length = 216
Score = 182 bits (461), Expect = 1e-44
Identities = 106/242 (43%), Positives = 139/242 (57%), Gaps = 7/242 (2%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FSQFG+ILD++A KTLK +GQA+V+F+++ SA+
Sbjct: 5 PNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASN 64
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKR-------TDEKSEKKQKR 460
AL+ MQGFPFYDK M+I Y+K+ SDI+AK GTF R ++ + TDEK +KK+K
Sbjct: 65 ALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFKERPKKVKPPKPAPGTDEKKDKKKKP 124
Query: 461 EHHHDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETT 640
++ + T P PN ILF+ NLP ET
Sbjct: 125 SSAENSNPN----AQTEQP--------------------------PNQILFLTNLPEETN 154
Query: 641 PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYA 820
MML MLF Q+PGFKEVR++ + IAFVE+ E Q+ AA LQ FKIT + M IT+A
Sbjct: 155 EMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFA 214
Query: 821 KK 826
KK
Sbjct: 215 KK 216
>sptr|Q21322|Q21322 Hypothetical protein.
Length = 206
Score = 153 bits (386), Expect = 5e-36
Identities = 85/239 (35%), Positives = 130/239 (54%), Gaps = 2/239 (0%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ PN T+Y SL AVF QFG+I+ V+ F+TLK +GQA V+F+++ +A
Sbjct: 4 VAPNSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFKELPAA 63
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDE--KSEKKQKREHH 469
+ A + + GFPFY+K MRIQ+A+ SD++A+ GT++ RE + +++ K K +K+E+
Sbjct: 64 SAAREALNGFPFYEKPMRIQFAREDSDVVAQEKGTYIKREPKYLSEKILKKPKSRKKENG 123
Query: 470 HDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMM 649
D A PN ILF NLP T M
Sbjct: 124 GDGPAP------------------------------------PNKILFCTNLPDSATAEM 147
Query: 650 LQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
L+++F Q+ G K++RM+ +PGIAFVE+ ++ A A L +FKI+ E+ M + YAKK
Sbjct: 148 LEIMFNQFAGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFKISAEHTMRVDYAKK 206
>sptr|Q21323|Q21323 Hypothetical protein.
Length = 217
Score = 148 bits (373), Expect = 2e-34
Identities = 89/237 (37%), Positives = 127/237 (53%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL VF+QFG+I+ +++F+ K +GQA +VF++V+SA
Sbjct: 4 INPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSA 63
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ AL+ +QGFPFY K MRIQYA+ SD+I++A GTFV + +KS K K+ +
Sbjct: 64 SNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTFVEKR------QKSTKIAKKPYEKP 117
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
A G +A PQ T P +PNNILF N+P T P +Q
Sbjct: 118 A-----KNGKSAAEPTQKEPQETDGP------------GLPNNILFCSNIPEGTEPEQIQ 160
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+F Q+PG +EVR + AF+EY E + A L +F+IT Q+ + +A K
Sbjct: 161 TIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALDNFRITPTQQITVKFASK 217
>sptr|O74968|O74968 Small nuclear ribonucleoprotein.
Length = 249
Score = 134 bits (336), Expect = 3e-30
Identities = 81/235 (34%), Positives = 128/235 (54%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
P+ T+Y L +F +GK++DV A KTL+ +GQA+VVF+++ +A+
Sbjct: 24 PSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASR 83
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAG 481
ALK +QG+P Y K M IQY+K+KSDII + + P E R K ++K +RE
Sbjct: 84 ALKDLQGYPLYGKPMMIQYSKSKSDIIVQRES---PEEIETR---KKDRKNRREMLKRTS 137
Query: 482 ASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQML 661
A Q A + P + A + + +++ PN +L +QN+P E +L +
Sbjct: 138 ALQ----PAAPKPTHKKPVPKRNVGAERKSTINEDLLPPNKVLLLQNIPQEVNADVLTQI 193
Query: 662 FCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
F + GF+EVRM+ + GIAFVEY + +AT A N ++ NQ+ +T+A+K
Sbjct: 194 FEAFSGFQEVRMVPGRRGIAFVEYDSDREATVAKNGTTGMSLS-GNQIKVTFARK 247
>sptr|Q7RQA6|Q7RQA6 Hypothetical protein (Fragment).
Length = 189
Score = 117 bits (294), Expect = 2e-25
Identities = 77/233 (33%), Positives = 106/233 (45%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN T+Y L F +G +LDV+ K+ K +GQA+V+F ++AS+
Sbjct: 6 IPPNQTLYVNNLEDKINVNDLKYLLYEFFCPYGNVLDVVIKKSNKLRGQAFVIFSNIASS 65
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T A K ++G PF +K + I YAKTKS II K DGT+ P + K + K
Sbjct: 66 TLAYKNLKGKPFLNKNININYAKTKSKIIEKLDGTYNPIKNYKSANNYENK--------- 116
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
+ LFVQNLP E L+
Sbjct: 117 ---------------------------------------INQFTLFVQNLPDEINKNALE 137
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVIT 814
+LF QYPGF EVR I + +AF+++ AMN LQSF IT ++ M I+
Sbjct: 138 ILFNQYPGFSEVRYIPGR-NVAFIDFNSYQNGEVAMNGLQSFXITPDHPMKIS 189
>sptrnew|CAE85534|CAE85534 Related to small nuclear
ribonucleoprotein snRNP U1A.
Length = 247
Score = 116 bits (290), Expect = 7e-25
Identities = 76/240 (31%), Positives = 117/240 (48%), Gaps = 5/240 (2%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
P T+Y +L +FS++G ++D++A LK KGQA+VVF+ SA
Sbjct: 8 PIATVYVRNLEERVKPEPLKEALRTIFSEYGNVIDIVAKTNLKAKGQAFVVFDKPESAQA 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSD--IIAKADGTFVPRERRKRTDEKSEKK--QKREHH 469
A+ +QGF ++K M + A+T+SD +I + + +R+R EK +K+ + E
Sbjct: 68 AIDELQGFELFEKPMVVTLARTRSDATVIQTGNEEEFDQHKRRRIAEKDKKRALEVAEQQ 127
Query: 470 HDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMM 649
+ G A P + G V+ E + PN ILFVQNLP + T
Sbjct: 128 NRLKRPLQGAAPDARPAKNQRGAGLKATGQGPAAVVPDEYLPPNRILFVQNLPDDFTKDD 187
Query: 650 LQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITK-ENQMVITYAKK 826
L +F ++ GF+EVR + + GIAFVEY E A A N + E M +TY ++
Sbjct: 188 LTTIFSRFDGFREVRTVPGRSGIAFVEYDAEAGAITAKENTAGMALKNGEKIMKVTYQRQ 247
>sptr|Q7SAK7|Q7SAK7 Hypothetical protein.
Length = 247
Score = 116 bits (290), Expect = 7e-25
Identities = 76/240 (31%), Positives = 117/240 (48%), Gaps = 5/240 (2%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
P T+Y +L +FS++G ++D++A LK KGQA+VVF+ SA
Sbjct: 8 PIATVYVRNLEERVKPEPLKEALRTIFSEYGNVIDIVAKTNLKAKGQAFVVFDKPESAQA 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSD--IIAKADGTFVPRERRKRTDEKSEKK--QKREHH 469
A+ +QGF ++K M + A+T+SD +I + + +R+R EK +K+ + E
Sbjct: 68 AIDELQGFELFEKPMVVTLARTRSDATVIQTGNEEEFDQHKRRRIAEKDKKRALEVAEQQ 127
Query: 470 HDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMM 649
+ G A P + G V+ E + PN ILFVQNLP + T
Sbjct: 128 NRLKRPLQGAAPDARPAKNQRGAGLKATGQGPAAVVPDEYLPPNRILFVQNLPDDFTKDD 187
Query: 650 LQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITK-ENQMVITYAKK 826
L +F ++ GF+EVR + + GIAFVEY E A A N + E M +TY ++
Sbjct: 188 LTTIFSRFDGFREVRTVPGRSGIAFVEYDAEAGAITAKENTAGMALKNGEKIMKVTYQRQ 247
>sptr|Q8IEP6|Q8IEP6 U1 small nuclear ribonucleoprotein a, putative.
Length = 453
Score = 112 bits (279), Expect = 1e-23
Identities = 81/281 (28%), Positives = 134/281 (47%), Gaps = 44/281 (15%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN T+Y +L +F+ +G+I D++ K+ KGQAWVV++D A
Sbjct: 171 IPPNETLYIKNLNDRVKTDEMKKNLKDLFNTYGEIKDLIVMKSFWRKGQAWVVYDDKECA 230
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEK-SEKKQK-REHH 469
T+AL +QG+ + K M+I ++ KSDI AK DGTFV R + + +K E++QK +E
Sbjct: 231 TKALNALQGYVLFGKIMQINFSHNKSDIHAKRDGTFVERSKEPKKPKKILEREQKQKEIF 290
Query: 470 HDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEII-----------------VP 598
+ + M + + G ++ + I ++ +I +P
Sbjct: 291 EQMHKNYLEMQKNNFNMLNGNKEINKPEIIDLSQMDKQTLIAKAQAKANEDKNKKNEELP 350
Query: 599 NN-------------------------ILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIE 703
NN ILFV+N+ LF Y GF E R+I
Sbjct: 351 NNNIFSSYYQMNNIAPVQNYPVVMPYKILFVENVVENVDTQAFNDLFKNYAGFVEARIIP 410
Query: 704 AKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+ +AFV++ DET AT AM +Q++++ + +++ I+YAK+
Sbjct: 411 QR-NVAFVDFTDETTATFAMKAVQNYEL-QGSKLKISYAKR 449
>sptr|Q86YK2|Q86YK2 Similar to small nuclear ribonucleoprotein
polypeptide B'' (Fragment).
Length = 109
Score = 110 bits (275), Expect = 4e-23
Identities = 53/104 (50%), Positives = 74/104 (71%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 3 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 62
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKR 427
T AL+++QGFPFY K MRIQYAKT SDII+K GTF +E++K+
Sbjct: 63 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKK 106
>sptr|Q8I2G9|Q8I2G9 Small nuclear ribonucleoprotein (snRNP),
putative.
Length = 193
Score = 107 bits (266), Expect = 4e-22
Identities = 78/234 (33%), Positives = 106/234 (45%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN T+Y L F +G I+D+ K+ K +GQA++VF ++AS+
Sbjct: 6 IPPNQTLYVNNLEDKINVNDLKFLLYEFFCPYGNIIDINIKKSNKGRGQAFIVFNNIASS 65
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T A K ++G F K + I YAKTKS II K +GT+ P K K EH +
Sbjct: 66 TLAYKNLKGKMFLKKNININYAKTKSTIIQKIEGTYNPLLNYK-------SKHNIEHKSN 118
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
+Y L VQNLP E L+
Sbjct: 119 L--------------IY--------------------------TLLVQNLPDEINKNALE 138
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITY 817
+LF QYPGF EVR I K IAFV++ + A +M LQ+FKIT + M I++
Sbjct: 139 ILFNQYPGFYEVRYIPGK-NIAFVDFTAQEHAEISMTGLQNFKITPHHPMKISW 191
Score = 33.1 bits (74), Expect = 7.7
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Frame = +2
Query: 590 IVPNNILFVQNLPHETTPMMLQML----FCQYPGFKEVRMIEAKPGI--AFVEYGDETQA 751
I PN L+V NL + L+ L FC Y ++ + ++ G AF+ + + +
Sbjct: 6 IPPNQTLYVNNLEDKINVNDLKFLLYEFFCPYGNIIDINIKKSNKGRGQAFIVFNNIASS 65
Query: 752 TAAMNNLQSFKITKENQMVITYAK 823
T A NL+ K+N + I YAK
Sbjct: 66 TLAYKNLKGKMFLKKN-ININYAK 88
Database: /db/uniprot/tmp/swall
Posted date: Mar 5, 2004 7:45 PM
Number of letters in database: 442,889,342
Number of sequences in database: 1,395,590
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 747,995,160
Number of Sequences: 1395590
Number of extensions: 15543551
Number of successful extensions: 45693
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45537
length of database: 442,889,342
effective HSP length: 124
effective length of database: 269,836,182
effective search space used: 64760683680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)