BLASTX 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969865.2.1
(675 letters)
Database: /db/trembl-ebi/tmp/swall
1,272,877 sequences; 406,886,216 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sptr|O22247|O22247 Small nuclear ribonucleoprotein-like protein ... 183 2e-45
sptr|Q8RUH0|Q8RUH0 Putative small nuclear ribonucleoprotein D2. 182 3e-45
sptr|Q8L3W7|Q8L3W7 Small nuclear ribonucleoprotein-like protein. 182 3e-45
sptrnew|EAA13684|EAA13684 EbiP2741 (Fragment). 170 1e-41
sptrnew|AAH51208|AAH51208 Similar to Small nuclear ribonucleopro... 169 2e-41
sw|P43330|SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 (snRN... 169 2e-41
sw|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm... 169 3e-41
sptr|Q8MUE3|Q8MUE3 Small nuclear ribonucleoprotein D2-like protein. 168 5e-41
sw|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm... 159 4e-38
sw|O14036|SMD2_SCHPO Probable small nuclear ribonucleoprotein Sm... 132 4e-30
sptrnew|EAA20539|EAA20539 Small nuclear ribonucleoprotein. 123 2e-27
sptr|O96265|O96265 Small nuclear ribonucleoprotein. (snRNP family). 123 2e-27
sptrnew|EAA31888|EAA31888 Hypothetical protein. 107 1e-22
sptr|Q9C252|Q9C252 Probable small nuclear ribonucleoprotein chai... 107 1e-22
sw|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 (snRN... 102 3e-21
sptr|Q8LHC2|Q8LHC2 P0458E05.28 protein. 102 6e-21
sptr|Q8SR04|Q8SR04 Small nuclear ribonucleoprotein D2. 69 4e-11
sptr|Q94B79|Q94B79 Small nuclear ribonucleoprotein-like protein. 69 7e-11
sptr|Q9AVX5|Q9AVX5 Small nuclear ribonucleoprotein SM D2. 63 4e-09
sptrnew|AAQ16042|AAQ16042 Small nuclear ribonucleoprotein Sm D2. 58 9e-08
sptr|Q9GYZ4|Q9GYZ4 Sm-D2. 58 9e-08
sptr|Q9U1W8|Q9U1W8 Y62E10A.12 protein. 54 2e-06
sptr|Q8IB34|Q8IB34 Ribonucleoprotein, putative. 50 3e-05
sptr|Q8IGW7|Q8IGW7 RE11655p. 50 3e-05
sptr|Q8IMX8|Q8IMX8 CG31184-PA. 50 3e-05
sptr|Q9LMN4|Q9LMN4 F16F4.12 protein (Putative Sm protein). 50 3e-05
sptr|Q9C6K5|Q9C6K5 Sm-like protein. 49 6e-05
sptrnew|AAH54368|AAH54368 1010001J12Rik protein. 49 7e-05
sptrnew|BAB25303|BAB25303 10 day old male pancreas cDNA, RIKEN f... 49 7e-05
sptrnew|BAB22585|BAB22585 Adult male heart cDNA, RIKEN full-leng... 49 7e-05
>sptr|O22247|O22247 Small nuclear ribonucleoprotein-like protein
(At2g47640).
Length = 108
Score = 183 bits (464), Expect = 2e-45
Identities = 90/105 (85%), Positives = 93/105 (88%)
Frame = +3
Query: 87 PMAXXXXXXXXXXXFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 266
PM F+TGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLEN
Sbjct: 4 PMEEDTNGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLEN 63
Query: 267 VREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 401
VREMWTEVPKTGKGKKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 64 VREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108
>sptr|Q8RUH0|Q8RUH0 Putative small nuclear ribonucleoprotein D2.
Length = 109
Score = 182 bits (462), Expect = 3e-45
Identities = 88/91 (96%), Positives = 91/91 (100%)
Frame = +3
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
F+TGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 19 FNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 78
Query: 309 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 401
KKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 79 KKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109
>sptr|Q8L3W7|Q8L3W7 Small nuclear ribonucleoprotein-like protein.
Length = 105
Score = 182 bits (462), Expect = 3e-45
Identities = 88/91 (96%), Positives = 91/91 (100%)
Frame = +3
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
F+TGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 15 FNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 74
Query: 309 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 401
KKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 75 KKKALPVNRDRFISKMFLRGDSVIIVLRNPK 105
>sptrnew|EAA13684|EAA13684 EbiP2741 (Fragment).
Length = 118
Score = 170 bits (431), Expect = 1e-41
Identities = 80/91 (87%), Positives = 87/91 (95%)
Frame = +3
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
F+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKG
Sbjct: 22 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPRTGKG 81
Query: 309 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 401
KKK PVNKDRFISKMFLRGDSVI+VLRNP+
Sbjct: 82 KKKVKPVNKDRFISKMFLRGDSVILVLRNPQ 112
>sptrnew|AAH51208|AAH51208 Similar to Small nuclear
ribonucleoprotein Sm.
Length = 118
Score = 169 bits (429), Expect = 2e-41
Identities = 80/90 (88%), Positives = 87/90 (96%)
Frame = +3
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
F+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 309 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 398
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>sw|P43330|SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 (snRNP
core protein D2) (Sm-D2).
Length = 118
Score = 169 bits (429), Expect = 2e-41
Identities = 80/90 (88%), Positives = 87/90 (96%)
Frame = +3
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
F+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 309 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 398
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>sw|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2
(snRNP core protein D2) (Sm-D2).
Length = 119
Score = 169 bits (428), Expect = 3e-41
Identities = 80/90 (88%), Positives = 86/90 (95%)
Frame = +3
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
F+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 82
Query: 309 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 398
KKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 83 KKKVKPVNKDRFISKMFLRGDSVILVLRNP 112
>sptr|Q8MUE3|Q8MUE3 Small nuclear ribonucleoprotein D2-like protein.
Length = 119
Score = 168 bits (426), Expect = 5e-41
Identities = 80/90 (88%), Positives = 86/90 (95%)
Frame = +3
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
F+TGPLSVL SVKNNTQVLINCRNNKKLL RV+AFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 25 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKG 84
Query: 309 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 398
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 85 KKKSKPVNKDRYISKMFLRGDSVILVLRNP 114
>sw|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm D2
(snRNP core protein D2) (Sm-D2).
Length = 118
Score = 159 bits (401), Expect = 4e-38
Identities = 76/90 (84%), Positives = 83/90 (92%)
Frame = +3
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
F+ GPLS+L SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 24 FNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKG 83
Query: 309 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 398
KKKA V KDRFISKMFLRGDSVI+V++NP
Sbjct: 84 KKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
>sw|O14036|SMD2_SCHPO Probable small nuclear ribonucleoprotein Sm D2
(snRNP core protein D2) (Sm-D2).
Length = 115
Score = 132 bits (332), Expect = 4e-30
Identities = 65/90 (72%), Positives = 74/90 (82%)
Frame = +3
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
FS GPLSVL +VKN+ QVLINCRNNKKLL RV+AFDRH NMVLENV+EMWTE +T G
Sbjct: 25 FSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASG 84
Query: 309 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 398
KK +NKDRFISKMFLRGD V++V+R P
Sbjct: 85 -KKGKAINKDRFISKMFLRGDGVVLVVRIP 113
>sptrnew|EAA20539|EAA20539 Small nuclear ribonucleoprotein.
Length = 101
Score = 123 bits (308), Expect = 2e-27
Identities = 59/88 (67%), Positives = 72/88 (81%)
Frame = +3
Query: 138 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKK 317
GPL +L VK+N QVLINCRNN+KLLGRV+AFDRHCN++L VRE+W E+ K K KKK
Sbjct: 17 GPLGLLSECVKDNAQVLINCRNNRKLLGRVKAFDRHCNLLLTEVREIWVEIIKDKKKKKK 76
Query: 318 ALPVNKDRFISKMFLRGDSVIIVLRNPK 401
+NKDR+IS +FLRGDSVI++LRNPK
Sbjct: 77 ---INKDRYISILFLRGDSVILILRNPK 101
>sptr|O96265|O96265 Small nuclear ribonucleoprotein. (snRNP family).
Length = 101
Score = 123 bits (308), Expect = 2e-27
Identities = 59/88 (67%), Positives = 72/88 (81%)
Frame = +3
Query: 138 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKK 317
GPL +L VK+N QVLINCRNN+K+LGRV+AFDRHCN++L VRE+W EV K K KKK
Sbjct: 17 GPLGLLSECVKDNAQVLINCRNNRKILGRVKAFDRHCNLLLTGVREIWVEVVKDKKKKKK 76
Query: 318 ALPVNKDRFISKMFLRGDSVIIVLRNPK 401
+NKDR+IS +FLRGDSVI++LRNPK
Sbjct: 77 ---INKDRYISILFLRGDSVILILRNPK 101
>sptrnew|EAA31888|EAA31888 Hypothetical protein.
Length = 126
Score = 107 bits (268), Expect = 1e-22
Identities = 51/78 (65%), Positives = 64/78 (82%)
Frame = +3
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
FS GPLS+L +V++++QVLI+ RN +K+L RV+AFDRH NMVLENV+EMWTE P+ G
Sbjct: 32 FSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPRLANG 91
Query: 309 KKKALPVNKDRFISKMFL 362
KK PVNKDRFISKMF+
Sbjct: 92 -KKGKPVNKDRFISKMFV 108
>sptr|Q9C252|Q9C252 Probable small nuclear ribonucleoprotein chain
D2.
Length = 126
Score = 107 bits (268), Expect = 1e-22
Identities = 51/78 (65%), Positives = 64/78 (82%)
Frame = +3
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
FS GPLS+L +V++++QVLI+ RN +K+L RV+AFDRH NMVLENV+EMWTE P+ G
Sbjct: 32 FSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPRLANG 91
Query: 309 KKKALPVNKDRFISKMFL 362
KK PVNKDRFISKMF+
Sbjct: 92 -KKGKPVNKDRFISKMFV 108
>sw|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 (snRNP
core protein D2) (Sm-D2).
Length = 110
Score = 102 bits (255), Expect = 3e-21
Identities = 49/90 (54%), Positives = 67/90 (74%)
Frame = +3
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
F GP+S++ ++ T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE
Sbjct: 26 FKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE------- 78
Query: 309 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 398
KK +N++RFISK+FLRGDSVI+VL+ P
Sbjct: 79 KKGKNVINRERFISKLFLRGDSVIVVLKTP 108
>sptr|Q8LHC2|Q8LHC2 P0458E05.28 protein.
Length = 50
Score = 102 bits (253), Expect = 6e-21
Identities = 49/50 (98%), Positives = 50/50 (100%)
Frame = +3
Query: 252 MVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 401
MVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL+NPK
Sbjct: 1 MVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLKNPK 50
>sptr|Q8SR04|Q8SR04 Small nuclear ribonucleoprotein D2.
Length = 135
Score = 69.3 bits (168), Expect = 4e-11
Identities = 35/83 (42%), Positives = 57/83 (68%)
Frame = +3
Query: 138 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKK 317
GPLS++ ++ VL++ R+N+K+LGRV A+DRH N+++E+ +E+ T K KG+KK
Sbjct: 20 GPLSLVRRAMVKMKPVLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTRGK-NKGRKK 78
Query: 318 ALPVNKDRFISKMFLRGDSVIIV 386
R + K+F+RGD+VI+V
Sbjct: 79 RQGCEFSRKLGKVFIRGDTVILV 101
>sptr|Q94B79|Q94B79 Small nuclear ribonucleoprotein-like protein.
Length = 135
Score = 68.6 bits (166), Expect = 7e-11
Identities = 36/63 (57%), Positives = 42/63 (66%)
Frame = +3
Query: 129 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 308
F+TGPLSVLMMSVKNNTQVLINCRNN+KLLGRVR L+ + K K
Sbjct: 19 FNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRLLTGTATWFLKMSEKCGLRFRKPEKE 78
Query: 309 KKK 317
++K
Sbjct: 79 RRK 81
>sptr|Q9AVX5|Q9AVX5 Small nuclear ribonucleoprotein SM D2.
Length = 82
Score = 62.8 bits (151), Expect = 4e-09
Identities = 29/83 (34%), Positives = 54/83 (65%)
Frame = +3
Query: 141 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 320
P + V+N+ V+I RNNK+++G++ +D+H N++LENV E+ G+ +
Sbjct: 3 PFDYISGCVRNDKSVMIILRNNKRMIGKIINYDKHLNLLLENV----NEIKFVGENFSEL 58
Query: 321 LPVNKDRFISKMFLRGDSVIIVL 389
+ + K +FI K+FLRGD+++++L
Sbjct: 59 IKI-KSKFIPKVFLRGDNIVLIL 80
>sptrnew|AAQ16042|AAQ16042 Small nuclear ribonucleoprotein Sm D2.
Length = 111
Score = 58.2 bits (139), Expect = 9e-08
Identities = 36/88 (40%), Positives = 49/88 (55%)
Frame = +3
Query: 138 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKK 317
GP +L +VKN T+V I R NK L+ V AFD+H N+VL + E+ T V
Sbjct: 32 GPFCLLDSAVKNGTRVFIQSRYNKSLVATVVAFDKHFNLVLRDAVEL-TMVNNE------ 84
Query: 318 ALPVNKDRFISKMFLRGDSVIIVLRNPK 401
K+R I MFLRG SV+ ++R P+
Sbjct: 85 ----QKERSIRNMFLRGASVVFIVRLPQ 108
>sptr|Q9GYZ4|Q9GYZ4 Sm-D2.
Length = 111
Score = 58.2 bits (139), Expect = 9e-08
Identities = 36/88 (40%), Positives = 49/88 (55%)
Frame = +3
Query: 138 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKK 317
GP +L +VKN T+V I R NK L+ V AFD+H N+VL + E+ T V
Sbjct: 32 GPFCLLDSAVKNGTRVFIQSRYNKSLVATVVAFDKHFNLVLRDAVEL-TMVNNE------ 84
Query: 318 ALPVNKDRFISKMFLRGDSVIIVLRNPK 401
K+R I MFLRG SV+ ++R P+
Sbjct: 85 ----QKERSIRNMFLRGASVVFIVRLPQ 108
>sptr|Q9U1W8|Q9U1W8 Y62E10A.12 protein.
Length = 102
Score = 53.9 bits (128), Expect = 2e-06
Identities = 31/82 (37%), Positives = 50/82 (60%)
Frame = +3
Query: 141 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 320
PL +L +S+ + +V + RN+++L GR+RAFD+H NMVL V E T + + +
Sbjct: 17 PLDLLRLSL--DERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETIT-TREVDEDTFEE 73
Query: 321 LPVNKDRFISKMFLRGDSVIIV 386
+ R + +F+RGDSVI+V
Sbjct: 74 IYKQTKRVVPMLFVRGDSVILV 95
>sptr|Q8IB34|Q8IB34 Ribonucleoprotein, putative.
Length = 74
Score = 50.1 bits (118), Expect = 3e-05
Identities = 22/69 (31%), Positives = 43/69 (62%)
Frame = +3
Query: 180 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMF 359
++ + C+ +++L+G++ A+D H NM+L NVRE + + K + +R + +F
Sbjct: 4 EIFLKCKGDRELIGKLDAYDNHLNMILSNVRETY---KYSVKENDEETVKKMERNLDMVF 60
Query: 360 LRGDSVIIV 386
+RGDS+I+V
Sbjct: 61 VRGDSIILV 69
>sptr|Q8IGW7|Q8IGW7 RE11655p.
Length = 103
Score = 50.1 bits (118), Expect = 3e-05
Identities = 30/82 (36%), Positives = 48/82 (58%)
Frame = +3
Query: 141 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 320
PL ++ +S+ + +V + RN ++L GR+ AFD+H NMVL + E T V + ++
Sbjct: 18 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 75
Query: 321 LPVNKDRFISKMFLRGDSVIIV 386
K R I +F+RGD VI+V
Sbjct: 76 YKTAK-RTIPMLFVRGDGVILV 96
>sptr|Q8IMX8|Q8IMX8 CG31184-PA.
Length = 103
Score = 50.1 bits (118), Expect = 3e-05
Identities = 30/82 (36%), Positives = 48/82 (58%)
Frame = +3
Query: 141 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 320
PL ++ +S+ + +V + RN ++L GR+ AFD+H NMVL + E T V + ++
Sbjct: 18 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 75
Query: 321 LPVNKDRFISKMFLRGDSVIIV 386
K R I +F+RGD VI+V
Sbjct: 76 YKTAK-RTIPMLFVRGDGVILV 96
>sptr|Q9LMN4|Q9LMN4 F16F4.12 protein (Putative Sm protein).
Length = 97
Score = 49.7 bits (117), Expect = 3e-05
Identities = 25/82 (30%), Positives = 52/82 (63%)
Frame = +3
Query: 141 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 320
PL ++ +S++ ++ + R++++L G++ AFD+H NM+L +V E+ T + + ++
Sbjct: 12 PLDLIRLSIEE--RIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEI 69
Query: 321 LPVNKDRFISKMFLRGDSVIIV 386
+ K R + +F+RGD VI+V
Sbjct: 70 VRTTK-RTVPFLFVRGDGVILV 90
>sptr|Q9C6K5|Q9C6K5 Sm-like protein.
Length = 98
Score = 48.9 bits (115), Expect = 6e-05
Identities = 27/82 (32%), Positives = 51/82 (62%)
Frame = +3
Query: 141 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 320
PL ++ +S+ + ++ + R++++L G++ AFD+H NM+L +V E T V + ++
Sbjct: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEI 69
Query: 321 LPVNKDRFISKMFLRGDSVIIV 386
+ K R I +F+RGD VI+V
Sbjct: 70 VRTTK-RTIEFLFVRGDGVILV 90
>sptrnew|AAH54368|AAH54368 1010001J12Rik protein.
Length = 102
Score = 48.5 bits (114), Expect = 7e-05
Identities = 26/82 (31%), Positives = 50/82 (60%)
Frame = +3
Query: 141 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 320
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 321 LPVNKDRFISKMFLRGDSVIIV 386
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>sptrnew|BAB25303|BAB25303 10 day old male pancreas cDNA, RIKEN
full-length enriched library, clone:1810049N07
product:MDS017 homolog.
Length = 102
Score = 48.5 bits (114), Expect = 7e-05
Identities = 26/82 (31%), Positives = 50/82 (60%)
Frame = +3
Query: 141 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 320
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 321 LPVNKDRFISKMFLRGDSVIIV 386
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>sptrnew|BAB22585|BAB22585 Adult male heart cDNA, RIKEN full-length
enriched library, clone:1010001J12 product:MDS017
homolog.
Length = 102
Score = 48.5 bits (114), Expect = 7e-05
Identities = 26/82 (31%), Positives = 50/82 (60%)
Frame = +3
Query: 141 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 320
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 321 LPVNKDRFISKMFLRGDSVIIV 386
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
Database: /db/trembl-ebi/tmp/swall
Posted date: Sep 26, 2003 8:29 PM
Number of letters in database: 406,886,216
Number of sequences in database: 1,272,877
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,773,302
Number of Sequences: 1272877
Number of extensions: 9839863
Number of successful extensions: 27466
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27420
length of database: 406,886,216
effective HSP length: 118
effective length of database: 256,686,730
effective search space used: 27208793380
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)