BLASTX 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594433.2.1
(766 letters)
Database: /db/trembl-ebi/tmp/swall
1,272,877 sequences; 406,886,216 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sptrnew|BAC77529|BAC77529 Replication protein A 70b. 278 7e-74
sptr|O24183|O24183 Replication protein A1. 278 7e-74
sptr|Q9SD82|Q9SD82 Replication factor A-like protein. 212 4e-54
sptr|Q9FME0|Q9FME0 Replication protein A1 (Putative RNA helicase). 208 7e-53
sptr|Q9AVL8|Q9AVL8 Replication protein A 70kDa. 97 3e-19
sptr|Q9SKI4|Q9SKI4 Putative replication protein A1 (At2g06510). 92 1e-17
sptr|Q9FHJ6|Q9FHJ6 Replication protein A1-like. 86 7e-16
sptr|Q8SR55|Q8SR55 DNA replication factor A protein 1. 84 2e-15
sptrnew|EAA32097|EAA32097 Hypothetical protein. 80 2e-14
sptr|Q8X0J1|Q8X0J1 Probable single-stranded DNA-binding protein ... 80 2e-14
sw|P22336|RFA1_YEAST Replication factor-A protein 1 (RF-A) (Sing... 80 3e-14
sw|Q92372|RFA1_SCHPO Replication factor-A protein 1 (Single-stra... 79 6e-14
sptrnew|AAL39476|AAL39476 LD04815p. 79 6e-14
sw|Q24492|RFA1_DROME Replication protein A 70 kDa DNA-binding su... 79 6e-14
sptr|O49671|O49671 Replication A protein-like. 77 2e-13
sw|Q19537|RFA1_CAEEL Probable replication factor A 73 kDa subuni... 77 2e-13
sptr|O97472|O97472 F18A1.5 protein. 76 4e-13
sw|Q01588|RFA1_XENLA Replication protein A 70 kDa DNA-binding su... 75 9e-13
sw|P27694|RFA1_HUMAN Replication protein A 70 kDa DNA-binding su... 73 4e-12
sptrnew|AAP92635|AAP92635 Cb1-727. 72 1e-11
sptr|Q8VEE4|Q8VEE4 Similar to replication protein A1 (70 kDa). 71 2e-11
sptr|Q962V7|Q962V7 Replication protein A subunit 1. 66 6e-10
sw|Q23696|RFA1_CRIFA Replication factor A 51 kDa subunit (RP-A) ... 63 5e-09
sptrnew|EAA01767|EAA01767 AgCP12781 (Fragment). 62 6e-09
sptr|Q9SH74|Q9SH74 Putative replication protein A1. 56 4e-07
sptr|Q9FHV9|Q9FHV9 Replication protein A1-like protein. 52 6e-06
sptr|Q9C8B2|Q9C8B2 Hypothetical 63.2 kDa protein. 51 1e-05
sptr|Q9C926|Q9C926 Putative replication protein. 51 1e-05
sptr|Q9LTU1|Q9LTU1 Replication protein A1-like. 50 2e-05
sptr|O82606|O82606 T2L5.8 protein (Replication protein A1-like). 48 2e-04
>sptrnew|BAC77529|BAC77529 Replication protein A 70b.
Length = 630
Score = 278 bits (710), Expect = 7e-74
Identities = 126/146 (86%), Positives = 139/146 (95%)
Frame = -1
Query: 736 LKPDQNMWYRACKTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSV 557
+KPDQ MWYRACKTCNKKVTE GSGYWCEGCQKND+ECSLRYIMV+KVSDPTGEAW+S+
Sbjct: 485 IKPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGEAWLSL 544
Query: 556 FNEHAEKIIGCSADELDRIRKEEGDDSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRIT 377
FN+ AE+I+GCSADELDRIRKEEGDDSY LKLKEATWVPHLFRVSVTQ+EY NEKRQRIT
Sbjct: 545 FNDQAERIVGCSADELDRIRKEEGDDSYLLKLKEATWVPHLFRVSVTQNEYMNEKRQRIT 604
Query: 376 VRSEAPVEHAAESKYLLEQIAKLTAC 299
VRSEAPV+HAAE+KY+LE+IAKLT C
Sbjct: 605 VRSEAPVDHAAEAKYMLEEIAKLTGC 630
>sptr|O24183|O24183 Replication protein A1.
Length = 630
Score = 278 bits (710), Expect = 7e-74
Identities = 126/146 (86%), Positives = 139/146 (95%)
Frame = -1
Query: 736 LKPDQNMWYRACKTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSV 557
+KPDQ MWYRACKTCNKKVTE GSGYWCEGCQKND+ECSLRYIMV+KVSDPTGEAW+S+
Sbjct: 485 IKPDQTMWYRACKTCNKKVTEAMGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGEAWLSL 544
Query: 556 FNEHAEKIIGCSADELDRIRKEEGDDSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRIT 377
FN+ AE+I+GCSADELDRIRKEEGDDSY LKLKEATWVPHLFRVSVTQ+EY NEKRQRIT
Sbjct: 545 FNDQAERIVGCSADELDRIRKEEGDDSYLLKLKEATWVPHLFRVSVTQNEYMNEKRQRIT 604
Query: 376 VRSEAPVEHAAESKYLLEQIAKLTAC 299
VRSEAPV+HAAE+KY+LE+IAKLT C
Sbjct: 605 VRSEAPVDHAAEAKYMLEEIAKLTGC 630
>sptr|Q9SD82|Q9SD82 Replication factor A-like protein.
Length = 604
Score = 212 bits (540), Expect = 4e-54
Identities = 96/143 (67%), Positives = 117/143 (81%), Gaps = 1/143 (0%)
Frame = -1
Query: 736 LKPDQNMWYRACKTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSV 557
+KPDQ MWYRACKTCNKKVTE SGYWCE CQK D ECSLRYIM VKVSD TGE W+S
Sbjct: 457 IKPDQTMWYRACKTCNKKVTEAMDSGYWCESCQKKDQECSLRYIMAVKVSDSTGETWLSA 516
Query: 556 FNEHAEKIIGCSADELDRIRKEEGD-DSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRI 380
FN+ AEKIIGC+AD+L+ ++ EEG+ + + KLKEATW HLFR+SV+Q EYN+EKRQRI
Sbjct: 517 FNDEAEKIIGCTADDLNDLKSEEGEVNEFQTKLKEATWSSHLFRISVSQQEYNSEKRQRI 576
Query: 379 TVRSEAPVEHAAESKYLLEQIAK 311
TVR +P++ AAE++ LL+ I+K
Sbjct: 577 TVRGVSPIDFAAETRLLLQDISK 599
>sptr|Q9FME0|Q9FME0 Replication protein A1 (Putative RNA helicase).
Length = 629
Score = 208 bits (529), Expect = 7e-53
Identities = 93/142 (65%), Positives = 117/142 (82%), Gaps = 1/142 (0%)
Frame = -1
Query: 736 LKPDQNMWYRACKTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSV 557
+KPDQ MWY+ACKTCNKKVTE SGYWCEGCQ+ ECSLRYIM VKV+D +GE W+S
Sbjct: 481 IKPDQTMWYQACKTCNKKVTEALDSGYWCEGCQRKYEECSLRYIMAVKVTDSSGETWISS 540
Query: 556 FNEHAEKIIGCSADELDRIRKEEGD-DSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRI 380
FN+ AEKI+GCSADEL++++ EEG+ + Y KLKEATW H+FRVSVTQ+EYN EKRQR+
Sbjct: 541 FNDEAEKILGCSADELNKLKSEEGEVNEYQTKLKEATWSSHVFRVSVTQNEYNGEKRQRV 600
Query: 379 TVRSEAPVEHAAESKYLLEQIA 314
TV+ AP++ AAE++ LL+ I+
Sbjct: 601 TVKGVAPLDFAAETRLLLQDIS 622
>sptr|Q9AVL8|Q9AVL8 Replication protein A 70kDa.
Length = 654
Score = 96.7 bits (239), Expect = 3e-19
Identities = 47/148 (31%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Frame = -1
Query: 727 DQNMWYRAC------KTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAW 566
+++ +Y AC + CNKKVT++ + C+ C + EC RY++ ++ D +G AW
Sbjct: 506 NESFFYTACPNMIGDRQCNKKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAW 565
Query: 565 VSVFNEHAEKIIGCSADELDRIRKEEGDDSYALKLKEATWVPHLFRVSVTQHEYNNEKRQ 386
V+ F E ++++GCSA EL+ + KE D +A + + +L R+ V + Y +E++
Sbjct: 566 VTAFQEAGQELLGCSATELNAL-KEREDPRFADTMLNCLFQEYLLRLKVKEESYGDERKV 624
Query: 385 RITVRSEAPVEHAAESKYLLEQIAKLTA 302
+ T V+ + ESK+LL+ I+K +A
Sbjct: 625 KNTAVKVEKVDPSGESKFLLDLISKSSA 652
>sptr|Q9SKI4|Q9SKI4 Putative replication protein A1 (At2g06510).
Length = 640
Score = 91.7 bits (226), Expect = 1e-17
Identities = 43/141 (30%), Positives = 82/141 (58%), Gaps = 7/141 (4%)
Frame = -1
Query: 712 YRAC------KTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSVFN 551
Y AC K CNKKVT + + + C+ C + EC RY++ V++ D TG W++ F
Sbjct: 500 YTACPLMIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAFQ 559
Query: 550 EHAEKIIGCSADELDRIRKE-EGDDSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITV 374
E E+I+GC A +L ++ E E ++ +A +++ + ++ ++ + + Y +E+R ++TV
Sbjct: 560 ETGEEIMGCPAKKLYAMKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQRVKMTV 619
Query: 373 RSEAPVEHAAESKYLLEQIAK 311
V + +ESKY+L+ + +
Sbjct: 620 VKVDKVNYTSESKYMLDLLVR 640
>sptr|Q9FHJ6|Q9FHJ6 Replication protein A1-like.
Length = 853
Score = 85.5 bits (210), Expect = 7e-16
Identities = 45/147 (30%), Positives = 81/147 (55%), Gaps = 8/147 (5%)
Frame = -1
Query: 724 QNMWYRAC------KTCNKKVTETFGSGYW-CEGCQKNDSECSLRYIMVVKVSDPTGEAW 566
+N Y AC + C+KKVT G G W CE C K EC RYI+ +++ D T W
Sbjct: 595 ENFCYTACPIMNGDRPCSKKVTNN-GDGTWRCEKCDKCVDECDYRYILQIQLQDHTDLTW 653
Query: 565 VSVFNEHAEKIIGCSADELDRIRKEEGD-DSYALKLKEATWVPHLFRVSVTQHEYNNEKR 389
+ F E E+I+G SA +L ++ E D + + ++ + ++F++ + + Y++E+R
Sbjct: 654 ATAFQEAGEEIMGMSAKDLYYVKYENQDEEKFEDIIRSVAFTKYIFKLKIKEETYSDEQR 713
Query: 388 QRITVRSEAPVEHAAESKYLLEQIAKL 308
+ TV + +++ ++++LE I KL
Sbjct: 714 VKATVVKAEKLNYSSNTRFMLEAIDKL 740
>sptr|Q8SR55|Q8SR55 DNA replication factor A protein 1.
Length = 623
Score = 84.0 bits (206), Expect = 2e-15
Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 2/142 (1%)
Frame = -1
Query: 727 DQNMWYRACKT--CNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSVF 554
+ +WY +CK CNKKV G Y CE C +C RY++ + + D +G+ WVS+F
Sbjct: 483 EDGLWYTSCKGEGCNKKVVMEDGGCYRCERCNMTYEDCDYRYMVTMHLGDFSGQMWVSLF 542
Query: 553 NEHAEKIIGCSADELDRIRKEEGDDSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITV 374
+E A G SA E+ ++ EE ++ + LFR+ Q YN+E R R +
Sbjct: 543 DEVATSFFGISAREM-KVMSEEAPGELQALIRRMYFRECLFRIKSKQDSYNDEIRMRYSG 601
Query: 373 RSEAPVEHAAESKYLLEQIAKL 308
S ++ ESK LL I K+
Sbjct: 602 LSVENLDILKESKRLLGVIEKM 623
>sptrnew|EAA32097|EAA32097 Hypothetical protein.
Length = 610
Score = 80.5 bits (197), Expect = 2e-14
Identities = 52/138 (37%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Frame = -1
Query: 721 NMWYRACKT--CNKKVTETFGSGYW-CEGCQKNDSECSLRYIMVVKVSDPTGEAWVSVFN 551
N Y C++ CN+KVT+ G G W CE CQ N RYIM V V+D TG+ W+S F+
Sbjct: 467 NFAYPGCRSEGCNRKVTD-MGDGTWRCEKCQINHDRPQYRYIMSVNVNDHTGQLWLSCFD 525
Query: 550 EHAEKIIGCSADELDRIRKEEGDDSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVR 371
+ A I+G SADEL IR E + + ++A FR + ++R R V
Sbjct: 526 DTARVIMGKSADELMEIR-ETDETRLPAEFEQANCRKLNFRCRAKMDTFGEQQRIRYQVM 584
Query: 370 SEAPVEHAAESKYLLEQI 317
S AP+++ E L E I
Sbjct: 585 SVAPLDYKMEGNKLNELI 602
>sptr|Q8X0J1|Q8X0J1 Probable single-stranded DNA-binding protein 68k
chain.
Length = 610
Score = 80.5 bits (197), Expect = 2e-14
Identities = 52/138 (37%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Frame = -1
Query: 721 NMWYRACKT--CNKKVTETFGSGYW-CEGCQKNDSECSLRYIMVVKVSDPTGEAWVSVFN 551
N Y C++ CN+KVT+ G G W CE CQ N RYIM V V+D TG+ W+S F+
Sbjct: 467 NFAYPGCRSEGCNRKVTD-MGDGTWRCEKCQINHDRPQYRYIMSVNVNDHTGQLWLSCFD 525
Query: 550 EHAEKIIGCSADELDRIRKEEGDDSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVR 371
+ A I+G SADEL IR E + + ++A FR + ++R R V
Sbjct: 526 DTARVIMGKSADELMEIR-ETDETRLPAEFEQANCRKLNFRCRAKMDTFGEQQRIRYQVM 584
Query: 370 SEAPVEHAAESKYLLEQI 317
S AP+++ E L E I
Sbjct: 585 SVAPLDYKMEGNKLNELI 602
>sw|P22336|RFA1_YEAST Replication factor-A protein 1 (RF-A)
(Single-stranded DNA-binding protein) (DNA binding
protein BUF2) (Replication protein A 69 kDa DNA- binding
subunit).
Length = 621
Score = 80.1 bits (196), Expect = 3e-14
Identities = 44/144 (30%), Positives = 80/144 (55%), Gaps = 2/144 (1%)
Frame = -1
Query: 736 LKPDQNMWYRAC--KTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWV 563
LK D N Y AC + CNKKV E + CE C N++ + RYI+ + + D T + W+
Sbjct: 476 LKVD-NFAYPACSNENCNKKVLEQPDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWL 534
Query: 562 SVFNEHAEKIIGCSADELDRIRKEEGDDSYALKLKEATWVPHLFRVSVTQHEYNNEKRQR 383
++F++ A++++G A+ L + KEE + + + + FR+ + YN++ R R
Sbjct: 535 TLFDDQAKQLLGVDANTLMSL-KEEDPNEFTKITQSIQMNEYDFRIRAREDTYNDQSRIR 593
Query: 382 ITVRSEAPVEHAAESKYLLEQIAK 311
TV + + + AE+ YL ++++K
Sbjct: 594 YTVANLHSLNYRAEADYLADELSK 617
>sw|Q92372|RFA1_SCHPO Replication factor-A protein 1
(Single-stranded DNA-binding protein p68 subunit).
Length = 609
Score = 79.0 bits (193), Expect = 6e-14
Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 2/138 (1%)
Frame = -1
Query: 724 QNMWYRACKT--CNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSVFN 551
+N+ Y AC CNKKV + GS + CE C K RYI+ + V D TG+ W++VF+
Sbjct: 470 KNVSYPACPAADCNKKVFDQGGS-WRCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNVFD 528
Query: 550 EHAEKIIGCSADELDRIRKEEGDDSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVR 371
+ + I+ +ADEL+ + +E ++++ + EA ++P++F+ Q + E R R TV
Sbjct: 529 DVGKLIMHKTADELNDL-QENDENAFMNCMAEACYMPYIFQCRAKQDNFKGEMRVRYTVM 587
Query: 370 SEAPVEHAAESKYLLEQI 317
S ++ ESK L+ I
Sbjct: 588 SINQMDWKEESKRLINFI 605
>sptrnew|AAL39476|AAL39476 LD04815p.
Length = 603
Score = 79.0 bits (193), Expect = 6e-14
Identities = 44/143 (30%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
Frame = -1
Query: 724 QNMWYRAC--KTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSVFN 551
+N +YRAC CNKKV + + CE C R ++ + + D T WVS FN
Sbjct: 457 ENAFYRACPQSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFN 516
Query: 550 EHAEKIIGCSADELDRIRKEEGDDSYALKLKEA-TWVPHLFRVSVTQHEYNNEKRQRITV 374
E E+++G ++ E+ E D + A ++ A + H+F++ Y + R ++TV
Sbjct: 517 EVGEQLLGHTSQEVGEAL--ENDPAKAEQIFSALNFTSHIFKLRCKNEVYGDMTRNKLTV 574
Query: 373 RSEAPVEHAAESKYLLEQIAKLT 305
+S AP+ H +K+LL+++ +LT
Sbjct: 575 QSVAPINHKEYNKHLLKELQELT 597
>sw|Q24492|RFA1_DROME Replication protein A 70 kDa DNA-binding
subunit (RP-A) (RF-A) (Replication factor-A protein 1)
(Single-stranded DNA-binding protein) (DmRPA1).
Length = 603
Score = 79.0 bits (193), Expect = 6e-14
Identities = 44/143 (30%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
Frame = -1
Query: 724 QNMWYRAC--KTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSVFN 551
+N +YRAC CNKKV + + CE C R ++ + + D T WVS FN
Sbjct: 457 ENAFYRACPQSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFN 516
Query: 550 EHAEKIIGCSADELDRIRKEEGDDSYALKLKEA-TWVPHLFRVSVTQHEYNNEKRQRITV 374
E E+++G ++ E+ E D + A ++ A + H+F++ Y + R ++TV
Sbjct: 517 EVGEQLLGHTSQEVGEAL--ENDPAKAEQIFSALNFTSHIFKLRCKNEVYGDMTRNKLTV 574
Query: 373 RSEAPVEHAAESKYLLEQIAKLT 305
+S AP+ H +K+LL+++ +LT
Sbjct: 575 QSVAPINHKEYNKHLLKELQELT 597
>sptr|O49671|O49671 Replication A protein-like.
Length = 717
Score = 77.0 bits (188), Expect = 2e-13
Identities = 44/146 (30%), Positives = 81/146 (55%), Gaps = 8/146 (5%)
Frame = -1
Query: 721 NMWYRAC------KTCNKKVTETFGSGYW-CEGCQKNDSECSLRYIMVVKVSDPTGEAWV 563
N Y AC + C+KKVT+ G G W CE C K+ EC RYI+ +++ D T V
Sbjct: 459 NFCYTACPIMNGDRPCSKKVTDN-GDGTWRCEKCDKSVDECDYRYILQLQIQDHTDLTCV 517
Query: 562 SVFNEHAEKIIGCSADELDRIRKEEGD-DSYALKLKEATWVPHLFRVSVTQHEYNNEKRQ 386
+ F E E+I+G SA +L ++ E D + + +++ + + F++ V + +++E+R
Sbjct: 518 TAFQEAGEEIMGISAKDLYYVKNEHKDEEKFEDIIRKVAFTKYNFKLKVKEETFSDEQRV 577
Query: 385 RITVRSEAPVEHAAESKYLLEQIAKL 308
+ TV + ++A+++ +L + KL
Sbjct: 578 KATVVKVDKLNYSADTRTMLGAMDKL 603
>sw|Q19537|RFA1_CAEEL Probable replication factor A 73 kDa subunit
(RP-A) (RF-A) (Replication factor-A protein 1).
Length = 655
Score = 77.0 bits (188), Expect = 2e-13
Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 5/144 (3%)
Frame = -1
Query: 721 NMWYRACKT--CNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSVFNE 548
N YR C + C KK+ G Y CE C KN ++ Y+M ++SD TG+ +V+ F +
Sbjct: 512 NALYRGCASEGCQKKLVGENGD-YRCEKCNKNMNKFKWLYMMQFELSDETGQVYVTAFGD 570
Query: 547 HAEKIIGCSADELDRIRKEEGDDSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVRS 368
A KI+G SA EL + +E D Y + +VP ++R+ YN E RQ++TV
Sbjct: 571 SAAKIVGKSAAELGELH-DESPDEYNAIFERLQFVPKMWRLRCKMDSYNEEVRQKMTVYG 629
Query: 367 EAPV---EHAAESKYLLEQIAKLT 305
V ++ K ++EQ+ +++
Sbjct: 630 VDDVNQDKYIENLKQMIEQMQQMS 653
>sptr|O97472|O97472 F18A1.5 protein.
Length = 658
Score = 76.3 bits (186), Expect = 4e-13
Identities = 44/130 (33%), Positives = 73/130 (56%), Gaps = 2/130 (1%)
Frame = -1
Query: 712 YRACKT--CNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSVFNEHAE 539
Y+ C + C KKV E+ G Y CE C K+ ++ Y+M ++SD TG+ +V+ F + A
Sbjct: 515 YKGCASEGCQKKVIESDGE-YRCEKCNKSMNKFKWLYMMQFELSDETGQVYVTAFGDSAA 573
Query: 538 KIIGCSADELDRIRKEEGDDSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAP 359
K++G +A E+ + K+E + Y + +VP ++R+ YN E RQ++TV S
Sbjct: 574 KVVGKTAQEVGDL-KDENLNEYNATFERLQFVPKMWRLRCKMETYNEEVRQKMTVFS--- 629
Query: 358 VEHAAESKYL 329
VE + KY+
Sbjct: 630 VEEVNQDKYI 639
>sw|Q01588|RFA1_XENLA Replication protein A 70 kDa DNA-binding
subunit (RP-A) (RF-A) (Replication factor-A protein 1)
(Single-stranded DNA-binding protein).
Length = 609
Score = 75.1 bits (183), Expect = 9e-13
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 2/141 (1%)
Frame = -1
Query: 724 QNMWYRACKT--CNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSVFN 551
+N Y+AC + CNKKV + + CE C K R I+ ++D W++ F
Sbjct: 465 ENCLYQACPSQDCNKKVIDQQNGLFRCEKCNKEFPNFKYRLILSANIADFGENQWITCFQ 524
Query: 550 EHAEKIIGCSADELDRIRKEEGDDSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVR 371
E AE I+G +A L + KE+ + +Y + A + + FR V YN+E R + T
Sbjct: 525 ESAESILGQNATYLGEL-KEKNEQAYDEVFQNANFRSYTFRARVKLETYNDESRIKATAV 583
Query: 370 SEAPVEHAAESKYLLEQIAKL 308
PV+H S+ L+ I K+
Sbjct: 584 DVKPVDHKEYSRRLIMNIRKM 604
>sw|P27694|RFA1_HUMAN Replication protein A 70 kDa DNA-binding
subunit (RP-A) (RF-A) (Replication factor-A protein 1)
(Single-stranded DNA-binding protein).
Length = 616
Score = 73.2 bits (178), Expect = 4e-12
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 2/140 (1%)
Frame = -1
Query: 724 QNMWYRACKT--CNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSVFN 551
+N Y+AC T CNKKV + Y CE C R I+ V ++D WV+ F
Sbjct: 474 ENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQ 533
Query: 550 EHAEKIIGCSADELDRIRKEEGDDSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVR 371
E AE I+G +A L + K++ + ++ + A + +FRV V YN+E R + TV
Sbjct: 534 ESAEAILGQNAAYLGEL-KDKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVM 592
Query: 370 SEAPVEHAAESKYLLEQIAK 311
PV++ + L+ I +
Sbjct: 593 DVKPVDYREYGRRLVMSIRR 612
>sptrnew|AAP92635|AAP92635 Cb1-727.
Length = 680
Score = 71.6 bits (174), Expect = 1e-11
Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
Frame = -1
Query: 724 QNMWYRACKT--CNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSVFN 551
+N Y+AC T CNKKV + Y CE C + R I+ V ++D WV+ F
Sbjct: 532 ENCMYQACPTQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNIADFQENQWVTCFQ 591
Query: 550 EHAEKIIGCSADELDRIRKEEG-------DDSYALKLKEATWVPHLFRVSVTQHEYNNEK 392
E AE I+G + L ++++ G + ++ + A + FR+ V YN+E
Sbjct: 592 ESAEAILGQNTVYLGELKEKVGCVFVSMNEQAFEEVFQNANFRSFTFRIRVKLETYNDES 651
Query: 391 RQRITVRSEAPVEHAAESKYLLEQIAK 311
R + TV PV++ SK L+ I K
Sbjct: 652 RIKATVIDVKPVDYRDYSKRLIMNIRK 678
>sptr|Q8VEE4|Q8VEE4 Similar to replication protein A1 (70 kDa).
Length = 623
Score = 70.9 bits (172), Expect = 2e-11
Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 2/140 (1%)
Frame = -1
Query: 724 QNMWYRACKT--CNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSVFN 551
+N Y+AC T CNKKV + Y CE C + R I+ ++D WV+ F
Sbjct: 483 ENCMYQACPTQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQWVTCFQ 542
Query: 550 EHAEKIIGCSADELDRIRKEEGDDSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVR 371
E AE I+G + L + KE+ + ++ + A + FR+ V YN+E R + TV
Sbjct: 543 ESAEAILGQNTMYLGEL-KEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVM 601
Query: 370 SEAPVEHAAESKYLLEQIAK 311
PV+ + L+ I K
Sbjct: 602 DVKPVDFRDYGRRLIANIRK 621
>sptr|Q962V7|Q962V7 Replication protein A subunit 1.
Length = 467
Score = 65.9 bits (159), Expect = 6e-10
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Frame = -1
Query: 715 WYRACKTCNKKVTETFGSG--YWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSVFNEHA 542
WY AC TCNKKVTE G + CE C K + RY++ ++V+D +AW+++FNE
Sbjct: 309 WYDACPTCNKKVTEEGAQGDRFRCEKCDKTVTPTQ-RYLVSIQVTDNVSQAWLTLFNEAG 367
Query: 541 EKIIGCSADELDRIRKEEGDDSYALKLKEATW-VPHLFRVSVTQHEYNN 398
+ G A EL R +E D Y KL + P + R+ V + +N
Sbjct: 368 IEFFGMEAAELKRRAQE--DPLYIAKLAQGRMNRPVVMRLRVKEETSSN 414
>sw|Q23696|RFA1_CRIFA Replication factor A 51 kDa subunit (RP-A)
(RF-A) (Replication factor-A protein 1) (Single-stranded
DNA-binding protein P51 subunit).
Length = 467
Score = 62.8 bits (151), Expect = 5e-09
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Frame = -1
Query: 715 WYRACKTCNKKVTETFGSG--YWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSVFNEHA 542
WY AC TCNKKVTE G + CE C RY++ ++V+D + W+++FNE
Sbjct: 309 WYDACPTCNKKVTEEGAQGDRFRCEKCDATVVPTQ-RYLVSIQVTDNVSQVWLTLFNEAG 367
Query: 541 EKIIGCSADELDRIRKEEGDDSYALKLKEA 452
+ G A EL R +E D Y KL +A
Sbjct: 368 VEFFGMEASELKRRAQE--DPLYIAKLAQA 395
>sptrnew|EAA01767|EAA01767 AgCP12781 (Fragment).
Length = 614
Score = 62.4 bits (150), Expect = 6e-09
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 5/144 (3%)
Frame = -1
Query: 721 NMWYRACKT--CNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSVFNE 548
N Y+AC CNKKV + + CE C R ++ + + D T WV+VF E
Sbjct: 470 NAVYKACPQADCNKKVIDQENGQFRCEKCNAEFPNFKYRLLVNMLIGDWTSNRWVTVFTE 529
Query: 547 HAEKIIGCSADELD---RIRKEEGDDSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRIT 377
AE+++G S+ E+ +KEE + + ++ +F++ + + R + +
Sbjct: 530 LAEEMLGKSSQEIGSSLEYQKEEAEKLFT----SISFKSFVFKLRTKVEYFGEQPRNKTS 585
Query: 376 VRSEAPVEHAAESKYLLEQIAKLT 305
S APV H + L++ I +LT
Sbjct: 586 AVSVAPVNHKEYNALLIKSIQELT 609
>sptr|Q9SH74|Q9SH74 Putative replication protein A1.
Length = 458
Score = 56.2 bits (134), Expect = 4e-07
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Frame = -1
Query: 727 DQNMWYRACKTCNKKVTE----TFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVS 560
D + +Y CK CNKKVT+ + + WCE C+ + RY + VKV D +GE +
Sbjct: 266 DWSWYYIVCKKCNKKVTKVVMTSLKAQLWCETCRAPITNVLARYKLHVKVMDSSGEMKLM 325
Query: 559 VFNEHAEKIIGCSADEL 509
+F+ + +I+GC A+ L
Sbjct: 326 LFDAMSSEIVGCPANNL 342
>sptr|Q9FHV9|Q9FHV9 Replication protein A1-like protein.
Length = 543
Score = 52.4 bits (124), Expect = 6e-06
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Frame = -1
Query: 727 DQNMWYRACKTCNKK---VTETFGSG----------YWCEGCQKNDSECSLRYIMVVKVS 587
D +Y C CN+K V E+ +G +WC+ CQ++ + RY + V+V
Sbjct: 275 DWGWFYFGCPKCNRKTELVKESTSTGKMVKTPMKPKFWCDKCQESITNVEARYKLHVRVM 334
Query: 586 DPTGEAWVSVFNEHAEKIIGCSADELDRIRKEEGDD 479
D T E + VF +A K+IG S++EL + EE D
Sbjct: 335 DQTAEIKLMVFENNATKLIGKSSEELVDGQYEEIKD 370
>sptr|Q9C8B2|Q9C8B2 Hypothetical 63.2 kDa protein.
Length = 567
Score = 51.2 bits (121), Expect = 1e-05
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Frame = -1
Query: 727 DQNMWYRACKTCNKKVTETFGS-----------GYWCEGCQKNDSECSLRYIMVVKVSDP 581
D +Y +CKTCNKKV +WC+ C + RY++ KV D
Sbjct: 285 DWAWYYISCKTCNKKVNHIHAGVNGVNNKGKKPRFWCDTCTSVVTNVVSRYMIYAKVMDS 344
Query: 580 TGEAWVSVFNEHAEKIIGCSADELDRIRKEEGDD 479
TGEA + +F+ +IIG SA + +E DD
Sbjct: 345 TGEAKLLLFDSICSEIIGESAASVFNGSVDEIDD 378
>sptr|Q9C926|Q9C926 Putative replication protein.
Length = 566
Score = 51.2 bits (121), Expect = 1e-05
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Frame = -1
Query: 727 DQNMWYRACKTCNKKV---TETFGSG-----YWCEGCQKNDSECSLRYIMVVKVSDPTGE 572
D + +Y A CNKKV +T SG Y C+ C + + RY + + + D TGE
Sbjct: 299 DYSWYYYAHIKCNKKVFKSKKTLSSGAKKIIYRCDKCATDVTSIEARYWLHLDIMDNTGE 358
Query: 571 AWVSVFNEHAEKIIGCSADELDRIRKEEGDDSYAL 467
+ + +F+ E IIGC A EL + E+ D+ L
Sbjct: 359 SKLMLFDSFVEPIIGCPATELLDVTNEQIDEPQPL 393
>sptr|Q9LTU1|Q9LTU1 Replication protein A1-like.
Length = 581
Score = 50.4 bits (119), Expect = 2e-05
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Frame = -1
Query: 727 DQNMWYRACKTCNKKVTETFGS-----------GYWCEGCQKNDSECSLRYIMVVKVSDP 581
D +Y +C+ CNKKVT +WC+ C+ + RY++ KV D
Sbjct: 298 DWAWYYISCRACNKKVTHIHSGVHGVNNKGKKPRFWCDSCKTVVTNVIARYMIYAKVMDN 357
Query: 580 TGEAWVSVFNEHAEKIIGCSADELDRIRKEEGDDSYAL--KLKEATWVPHLFRVSV 419
TGE+ + +F++ +IIG +A + +E DD L LK LF VS+
Sbjct: 358 TGESKLLLFDQICTEIIGETAPSVLNGSVDEIDDPDDLPDALKNLYGKTFLFLVSI 413
>sptr|O82606|O82606 T2L5.8 protein (Replication protein A1-like).
Length = 1073
Score = 47.8 bits (112), Expect = 2e-04
Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 11/150 (7%)
Frame = -1
Query: 727 DQNMWYRACKTCNKKVTETFGS-----------GYWCEGCQKNDSECSLRYIMVVKVSDP 581
D +Y +CKTCNKKV +WC+ C+ + RY++ KV D
Sbjct: 274 DWAWYYISCKTCNKKVNHIHAGVNGVNNKGKKPKFWCDTCKSVVTNVVSRYMIYAKVMDS 333
Query: 580 TGEAWVSVFNEHAEKIIGCSADELDRIRKEEGDDSYALKLKEATWVPHLFRVSVTQHEYN 401
T EA + +F+ +IIG SA + E +D L + F V + N
Sbjct: 334 TSEAKLVLFDSICFEIIGESATSVLNGSVNEIEDPEDLPDSVKNLIGKTFLFLVWVEKDN 393
Query: 400 NEKRQRITVRSEAPVEHAAESKYLLEQIAK 311
+ I S+ ++ K LLE A+
Sbjct: 394 ISDGKEIYKVSKVLLKDGLLEKQLLEDSAE 423
Database: /db/trembl-ebi/tmp/swall
Posted date: Sep 26, 2003 8:29 PM
Number of letters in database: 406,886,216
Number of sequences in database: 1,272,877
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 549,506,089
Number of Sequences: 1272877
Number of extensions: 11435596
Number of successful extensions: 30481
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30423
length of database: 406,886,216
effective HSP length: 120
effective length of database: 254,140,976
effective search space used: 34054890784
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)