BLASTX 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2550809.2.1
(876 letters)
Database: /db/trembl-ebi/tmp/swall
1,272,877 sequences; 406,886,216 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sptr|O23322|O23322 RNA polymerase II FIFTH largest subunit homol... 175 8e-43
sptr|Q8LE42|Q8LE42 RNA polymerase II fifth largest subunit-like ... 147 2e-34
sptr|Q9LIK8|Q9LIK8 RNA polymerase II fifth largest subunit-like ... 138 1e-31
sptr|O23308|O23308 Hypothetical 22.0 kDa protein. 94 2e-18
sw|P46279|RPB7_SOYBN DNA-directed RNA polymerase II 19 kDa polyp... 83 6e-15
sptrnew|AAO64087|AAO64087 Putative RNA polymerase II. 78 1e-13
sptrnew|BAC43532|BAC43532 Putative RNA polymerase II. 78 1e-13
sw|P38421|RPB7_ARATH DNA-directed RNA polymerase II 19 kDa polyp... 78 1e-13
sptr|Q8IJC9|Q8IJC9 DNA-directed RNA polymerase II, putative. 61 2e-08
sptr|O29148|O29148 DNA-directed RNA polymerase, subunit E' (RPOE1). 58 2e-07
sptr|Q8SRG5|Q8SRG5 DNA-directed RNA polymerase II 19kDa subunit. 57 3e-07
sptr|Q9N3C9|Q9N3C9 Hypothetical 22.1 kDa protein. 56 6e-07
sptrnew|AAH05580|AAH05580 Polymerase (RNA) II (DNA directed) pol... 56 7e-07
sptr|Q9C474|Q9C474 RNA polymerase II subunit 7. 56 7e-07
sptrnew|AAH55278|AAH55278 Polymerase (RNA) II (DNA directed) pol... 56 7e-07
sw|P52433|RPB7_HUMAN DNA-directed RNA polymerase II 19 kDa polyp... 56 7e-07
sptrnew|EAA17978|EAA17978 RNA polymerase II subunit 7. 55 2e-06
sptrnew|EAA00949|EAA00949 AgCP12809 (Fragment). 54 2e-06
sptr|Q7ZW41|Q7ZW41 Hypothetical protein. 54 2e-06
sptr|Q9VFB5|Q9VFB5 CG31155-PA. 52 8e-06
sw|O14459|RPB7_SCHPO DNA-directed RNA polymerase II 19 kDa polyp... 51 2e-05
sptr|Q9HNL1|Q9HNL1 DNA-directed RNA polymerase subunit E'. 47 3e-04
sptr|Q8TVE1|Q8TVE1 DNA-directed RNA polymerase subunit E'. 47 3e-04
sw|P34087|RPB7_YEAST DNA-directed RNA polymerase II 19 kDa polyp... 46 8e-04
sptr|O26364|O26364 DNA-dependent RNA polymerase, subunit E'. 45 0.001
sptr|O59571|O59571 188AA long hypothetical DNA-directed RNA poly... 45 0.001
sptr|Q8U439|Q8U439 DNA-directed RNA polymerase, subunit e'. 44 0.003
sptr|Q9UY23|Q9UY23 DNA-directed RNA polymerase, subunit E' (RPOE1). 44 0.004
sptr|Q980A3|Q980A3 DNA-directed RNA polymerase, subunit E' (rpoE... 43 0.005
sptr|Q98S95|Q98S95 RNA polymerase II RPB7 subunit-like protein. 43 0.006
>sptr|O23322|O23322 RNA polymerase II FIFTH largest subunit homolog
(RNA polymerase II FIFTH largest subunit like protein).
Length = 161
Score = 175 bits (443), Expect = 8e-43
Identities = 82/158 (51%), Positives = 120/158 (75%), Gaps = 1/158 (0%)
Frame = -1
Query: 726 LDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFT 547
+D KGL+L++AI+V LLE ++A+KE GYY+AV L I EGK+RE TG+VLFPV F+
Sbjct: 1 MDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGEGKIREHTGEVLFPVMFS 60
Query: 546 CITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDH-S 370
+T K KGE++ G V ++LKHGVF++ GP+E+++L+ M +YKYI GEN +FMN+ S
Sbjct: 61 GMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPDYKYIPGENPIFMNEKTS 120
Query: 369 KLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
+++ +T VR V+G +WME +R+FQ LA++ GD+LGPL
Sbjct: 121 RIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPL 158
>sptr|Q8LE42|Q8LE42 RNA polymerase II fifth largest subunit-like
protein.
Length = 174
Score = 147 bits (371), Expect = 2e-34
Identities = 77/174 (44%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F++ ++ W+V I +D GL+L++AI++RLLE + +A+K+ GY I L+ I E
Sbjct: 1 MFIKVKLPWDVTIPAEDMDT-GLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGE 59
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
GK++E TG++ FPV F I K KGE++ G V ++ K GVFLKSGP E I+L+ M
Sbjct: 60 GKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPG 119
Query: 417 YKYIGGENAMFMNDH-SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGP 259
Y++I GEN FMN + S+++ VRF VL W EA++ F LA+I GD LGP
Sbjct: 120 YEFIPGENPFFMNQYMSRIQIGARVRFVVLDTEWREAEKDFMALASIDGDNLGP 173
>sptr|Q9LIK8|Q9LIK8 RNA polymerase II fifth largest subunit-like
protein.
Length = 157
Score = 138 bits (347), Expect = 1e-31
Identities = 72/153 (47%), Positives = 101/153 (66%), Gaps = 1/153 (0%)
Frame = -1
Query: 714 GLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQ 535
GL+L++AI++RLLE + +A+K+ GY I L+ I EGK++E TG++ FPV F I
Sbjct: 4 GLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICF 63
Query: 534 KPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDH-SKLEK 358
K KGE++ G V ++ K GVFLKSGP E I+L+ M Y++I GEN FMN + S+++
Sbjct: 64 KMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPGYEFIPGENPFFMNQYMSRIQI 123
Query: 357 DTAVRFKVLGFRWMEADRQFQLLATIAGDFLGP 259
VRF VL W EA++ F LA+I GD LGP
Sbjct: 124 GARVRFVVLDTEWREAEKDFMALASIDGDNLGP 156
>sptr|O23308|O23308 Hypothetical 22.0 kDa protein.
Length = 194
Score = 94.4 bits (233), Expect = 2e-18
Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 18/164 (10%)
Frame = -1
Query: 693 IIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGD-------VLFPVSFTCITQ 535
I+ RLL+D+ H +A +EHG+Y+ + LK+I K + + + FPVSFTC T
Sbjct: 21 ILCRLLQDLIHEKACREHGFYLGITALKSIGNNKNNNIDNENNHQAKILTFPVSFTCRTF 80
Query: 534 KPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGG-----ENAMFMNDH- 373
P +G+++ G V ++L +G F++SGP+ +L+ M +Y Y+ E F D
Sbjct: 81 LPARGDILQGTVKKVLWNGAFIRSGPLRYAYLSLLKMPHYHYVHSPLSEDEKPHFQKDDL 140
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQ----FQLLATIAGD-FLGPL 256
SK+ VRF+VL R+ E + + +LAT+ G+ GP+
Sbjct: 141 SKIAVGVVVRFQVLAVRFKERPHKRRNDYYVLATLEGNGSFGPI 184
>sw|P46279|RPB7_SOYBN DNA-directed RNA polymerase II 19 kDa
polypeptide (EC 2.7.7.6) (RNA polymerase II subunit 5).
Length = 176
Score = 82.8 bits (203), Expect = 6e-15
Identities = 53/174 (30%), Positives = 91/174 (52%), Gaps = 2/174 (1%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F + N+ + P R LR ++ +L++DV S HG+ +AV ++ I +
Sbjct: 1 MFFHIVLERNMQLHPRYFGRN---LRDNLVSKLMKDV-EGTCSGRHGFVVAVTGIENIGK 56
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
G +R+ TG V FPV + C+ +P KGE++ V + K G F ++GPV+ +
Sbjct: 57 GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDD 116
Query: 417 YKYIGGE--NAMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
++ G+ N + K++KD+ VR K++G R ++A F + TI DFLG
Sbjct: 117 MEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLG 168
>sptrnew|AAO64087|AAO64087 Putative RNA polymerase II.
Length = 176
Score = 78.2 bits (191), Expect = 1e-13
Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 2/174 (1%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F + N+ + P R L++ ++ +L++DV S HG+ +A+ + I +
Sbjct: 1 MFFHIVLERNMQLHPRFFGRN---LKENLVSKLMKDV-EGTCSGRHGFVVAITGIDTIGK 56
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
G +R+ TG V FPV + C+ +P KGE++ V + K G F ++GPV+ +
Sbjct: 57 GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDD 116
Query: 417 YKYIGGE--NAMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
++ G+ N + K++K+ VR K++G R ++A F + TI DFLG
Sbjct: 117 MEFQAGDMPNYTTSDGSVKIQKECEVRLKIIGTR-VDATAIF-CVGTIKDDFLG 168
>sptrnew|BAC43532|BAC43532 Putative RNA polymerase II.
Length = 176
Score = 78.2 bits (191), Expect = 1e-13
Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 2/174 (1%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F + N+ + P R L++ ++ +L++DV S HG+ +A+ + I +
Sbjct: 1 MFFHIVLERNMQLHPRFFGRN---LKENLVSKLMKDV-EGTCSGRHGFVVAITGIDTIGK 56
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
G +R+ TG V FPV + C+ +P KGE++ V + K G F ++GPV+ +
Sbjct: 57 GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDD 116
Query: 417 YKYIGGE--NAMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
++ G+ N + K++K+ VR K++G R ++A F + TI DFLG
Sbjct: 117 MEFQAGDMPNYTTSDGSVKIQKECEVRLKIIGTR-VDATAIF-CVGTIKDDFLG 168
>sw|P38421|RPB7_ARATH DNA-directed RNA polymerase II 19 kDa
polypeptide (EC 2.7.7.6) (RNA polymerase II subunit 5).
Length = 176
Score = 78.2 bits (191), Expect = 1e-13
Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 2/174 (1%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F + N+ + P R L++ ++ +L++DV S HG+ +A+ + I +
Sbjct: 1 MFFHIVLERNMQLHPRFFGRN---LKENLVSKLMKDV-EGTCSGRHGFVVAITGIDTIGK 56
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
G +R+ TG V FPV + C+ +P KGE++ V + K G F ++GPV+ +
Sbjct: 57 GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDD 116
Query: 417 YKYIGGE--NAMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
++ G+ N + K++K+ VR K++G R ++A F + TI DFLG
Sbjct: 117 MEFQAGDMPNYTTSDGSVKIQKECEVRLKIIGTR-VDATAIF-CVGTIKDDFLG 168
>sptr|Q8IJC9|Q8IJC9 DNA-directed RNA polymerase II, putative.
Length = 177
Score = 61.2 bits (147), Expect = 2e-08
Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 2/165 (1%)
Frame = -1
Query: 750 NVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGD 571
NV+I PSQL + + I +L + + S ++GY I V ++ G+V++ TG
Sbjct: 10 NVIIKPSQLGPR----YQQYIEDMLRNSVEGQCSVKYGYVICVIRIIHSEPGRVQDGTGM 65
Query: 570 VLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGE-- 397
++ V + I KP K EV+ V + K G F ++GP++ IF++ ++ Y +
Sbjct: 66 IVVKVKYQAIVFKPFKDEVLDAIVTDVNKLGFFAQAGPLK-IFISRTAIPKYFEYSEDLH 124
Query: 396 NAMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
F + ++ T VR K+ G R+ + F +ATI ++LG
Sbjct: 125 YPCFSSGDYNIKPQTTVRIKLQGIRY-DLSNMF-AIATINNEYLG 167
>sptr|O29148|O29148 DNA-directed RNA polymerase, subunit E' (RPOE1).
Length = 189
Score = 57.8 bits (138), Expect = 2e-07
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 3/149 (2%)
Frame = -1
Query: 693 IIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEV 514
+I LL + R +E+G I + ++ I EG++ E G V F V F I +P+ EV
Sbjct: 25 VINSLLWEQFEGRLDREYGMIIGIESIEEIGEGRIIEGDGGVYFDVVFNAICFRPLHQEV 84
Query: 513 MVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDHSK--LEKDTAVRF 340
+ G V I++ G F+ GP +++ + +Y +N + +K L++ VR
Sbjct: 85 VEGEVIEIVEFGAFVSIGPFDALLHMSQVTDDYMVFDEKNKRLVGRETKKVLQEGDKVRA 144
Query: 339 KVLGFRWMEAD-RQFQLLATIAGDFLGPL 256
+++ E + + ++ T+ +LG L
Sbjct: 145 RIVSLSLKEREPEKSKIGLTMRQPWLGAL 173
>sptr|Q8SRG5|Q8SRG5 DNA-directed RNA polymerase II 19kDa subunit.
Length = 155
Score = 57.0 bits (136), Expect = 3e-07
Identities = 47/172 (27%), Positives = 87/172 (50%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F + N+ +SP+ L G ++ I LL V +S GY + V + ISE
Sbjct: 1 MFFVRDFVQNIHLSPNYL---GPNIQALIEEYLLSKVEGSCSSS--GYVVMVLSIDEISE 55
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
++ LTG+ +F V + +T KP+KGEV+ +V K GVF GP+ ++F++ + N
Sbjct: 56 SRII-LTGETIFTVKYKALTLKPLKGEVIDANVVETNKMGVFASVGPL-TVFISNHQIPN 113
Query: 417 YKYIGGENAMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
+ +++ K+ +R K++G + +++ R + + T+ D LG
Sbjct: 114 FLL-----------ENEITKNVMIRLKIIGTK-IDSTRIY-AVGTLNDDSLG 152
>sptr|Q9N3C9|Q9N3C9 Hypothetical 22.1 kDa protein.
Length = 197
Score = 56.2 bits (134), Expect = 6e-07
Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 4/176 (2%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F + V + P G L + I ++L +V K +G+ IAV + I
Sbjct: 24 MFFHLSLDHEVCLHPKYF---GPNLNETIKMKLFNEVEGTCTGK-YGFVIAVTTIDTIGH 79
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM-- 424
G ++ G V++PV + I +P KG+V+ G V ++ K G+F GP+ S F++ +
Sbjct: 80 GLIQPGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFCDIGPL-SCFISRHCIPP 138
Query: 423 -SNYKYIGGENAMFMNDHSK-LEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
+ + ND + + D +R K++G R ++A+ F + T+ DFLG
Sbjct: 139 DMEFDPNSEKPCYKTNDEANVIRNDDEIRVKLIGTR-VDANDIF-AIGTLMDDFLG 192
>sptrnew|AAH05580|AAH05580 Polymerase (RNA) II (DNA directed)
polypeptide G (Fragment).
Length = 207
Score = 55.8 bits (133), Expect = 7e-07
Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Frame = -1
Query: 645 EHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLK 466
++G+ IAV + I G ++ G VL+PV + I +P KGEV+ V ++ K G+F +
Sbjct: 76 KYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTE 135
Query: 465 SGPVESIFLAEKSMSNYKYIGGENA---MFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQ 295
GP+ S ++ N M++ +++D +R K++G R + D
Sbjct: 136 IGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKND--IF 193
Query: 294 LLATIAGDFLG 262
+ ++ D+LG
Sbjct: 194 AIGSLMDDYLG 204
>sptr|Q9C474|Q9C474 RNA polymerase II subunit 7.
Length = 173
Score = 55.8 bits (133), Expect = 7e-07
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 3/176 (1%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F ++S N+ + PS G + + + +LL DV + + GY + V I
Sbjct: 1 MFFLKDLSLNLTLHPSFF---GPQMDQYLREKLLSDV-EGTCTGQFGYIVCVLDSMNIDV 56
Query: 597 GKVREL--TGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM 424
GK R + TG F V + + KP KGEV+ V + K G F GP+
Sbjct: 57 GKGRIIPSTGMAEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGFFADVGPLSVFVSTHLIP 116
Query: 423 SNYKYIGGEN-AMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGP 259
S+ K+ N +++ +EK + VR K++G R + + +I D+LGP
Sbjct: 117 SDMKFNPSANPPAYVSPDENIEKGSRVRLKIVGTR--TDVNEIYAIGSIKEDYLGP 170
>sptrnew|AAH55278|AAH55278 Polymerase (RNA) II (DNA directed)
polypeptide G.
Length = 172
Score = 55.8 bits (133), Expect = 7e-07
Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Frame = -1
Query: 645 EHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLK 466
++G+ IAV + I G ++ G VL+PV + I +P KGEV+ V ++ K G+F +
Sbjct: 41 KYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTE 100
Query: 465 SGPVESIFLAEKSMSNYKYIGGENA---MFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQ 295
GP+ S ++ N M++ +++D +R K++G R + D
Sbjct: 101 IGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKND--IF 158
Query: 294 LLATIAGDFLG 262
+ ++ D+LG
Sbjct: 159 AIGSLMDDYLG 169
>sw|P52433|RPB7_HUMAN DNA-directed RNA polymerase II 19 kDa
polypeptide (EC 2.7.7.6) (RPB7).
Length = 172
Score = 55.8 bits (133), Expect = 7e-07
Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Frame = -1
Query: 645 EHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLK 466
++G+ IAV + I G ++ G VL+PV + I +P KGEV+ V ++ K G+F +
Sbjct: 41 KYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTE 100
Query: 465 SGPVESIFLAEKSMSNYKYIGGENA---MFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQ 295
GP+ S ++ N M++ +++D +R K++G R + D
Sbjct: 101 IGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKND--IF 158
Query: 294 LLATIAGDFLG 262
+ ++ D+LG
Sbjct: 159 AIGSLMDDYLG 169
>sptrnew|EAA17978|EAA17978 RNA polymerase II subunit 7.
Length = 193
Score = 54.7 bits (130), Expect = 2e-06
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 19/182 (10%)
Frame = -1
Query: 750 NVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGD 571
NV+I PSQL K + I +L + + ++++GY I V ++ G+V++ TG
Sbjct: 10 NVIIKPSQLGPK----YQQYIEDMLRNSIEGQCTEKYGYIICVIRIMHSEPGRVQDGTGM 65
Query: 570 VLFPVSFTCITQKPMKGEVMV----------------GHVDRILKHGVFLKSGPVESIFL 439
++ V + I KP K EV+ V + K G F ++GP++ IF+
Sbjct: 66 IVVKVKYQAIVFKPFKDEVLFKINKLINKLIKSFVLDAIVTDVNKLGFFAQAGPLK-IFI 124
Query: 438 AEKSMSNYKYIGGENA---MFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDF 268
+ ++ Y + E+A F + ++ T VR K+ G R+ + F +ATI ++
Sbjct: 125 SRTAIPKY-FEYNEDAHYPCFSSGSHNIKPQTTVRLKLQGIRY-DLSNMF-AIATINNEY 181
Query: 267 LG 262
LG
Sbjct: 182 LG 183
>sptrnew|EAA00949|EAA00949 AgCP12809 (Fragment).
Length = 192
Score = 54.3 bits (129), Expect = 2e-06
Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 4/132 (3%)
Frame = -1
Query: 645 EHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLK 466
++G+ IAV + I G ++ G V++PV + I +P KGEV+ V ++ K G+F +
Sbjct: 60 KYGFVIAVTTIDDIGSGTIQPGQGFVVYPVKYKAIVFRPFKGEVLDATVKQVNKVGMFAE 119
Query: 465 SGPVESIFLAEKSMSNYKYIGGENA----MFMNDHSKLEKDTAVRFKVLGFRWMEADRQF 298
GP+ S F++ S+ A +N S + + +R K++G R ++A F
Sbjct: 120 IGPL-SCFISHHSIPADMQFCPNGAPPCYRAINGESVIAAEDKIRLKIVGTR-VDATGIF 177
Query: 297 QLLATIAGDFLG 262
+ T+ D+LG
Sbjct: 178 -AIGTLMDDYLG 188
>sptr|Q7ZW41|Q7ZW41 Hypothetical protein.
Length = 172
Score = 54.3 bits (129), Expect = 2e-06
Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Frame = -1
Query: 645 EHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLK 466
++G+ IAV + I G ++ G VL+PV + I +P KGEV+ V ++ K G+F +
Sbjct: 41 KYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTE 100
Query: 465 SGPVESIFLAEKSMSNYKYIGGENA---MFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQ 295
GP+ S ++ N +++ +++D +R K++G R + D
Sbjct: 101 IGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKND--IF 158
Query: 294 LLATIAGDFLG 262
+ ++ D+LG
Sbjct: 159 AIGSLMDDYLG 169
>sptr|Q9VFB5|Q9VFB5 CG31155-PA.
Length = 173
Score = 52.4 bits (124), Expect = 8e-06
Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 11/166 (6%)
Frame = -1
Query: 726 LDRKGLLLRKAIIVRLLEDVTHRRASK-------EHGYYIAVNQLKAISEGKVRELTGDV 568
L+++ LL + +LLE V + S+ ++G+ IAV + I G ++ G V
Sbjct: 7 LEQEILLHPRYFGPQLLETVKQKLYSEVEGTCTGKYGFVIAVTTIDQIGSGVIQPGQGFV 66
Query: 567 LFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM-SNYKYIGGENA 391
++PV + I +P KGEV+ V +I K G+F + GP+ S F++ S+ ++ ++ N
Sbjct: 67 VYPVKYKAIVFRPFKGEVLDAVVKQINKVGMFAEIGPL-SCFISHHSIPADMQFCPNGNP 125
Query: 390 MFMNDHSK---LEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
+ + + +R K++G R ++A F + T+ D+LG
Sbjct: 126 PCYKSKDEDVVISGEDKIRLKIVGTR-VDATGIF-AIGTLMDDYLG 169
>sw|O14459|RPB7_SCHPO DNA-directed RNA polymerase II 19 kDa
polypeptide (EC 2.7.7.6).
Length = 172
Score = 51.2 bits (121), Expect = 2e-05
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 3/178 (1%)
Frame = -1
Query: 780 MVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAIS 601
M F E+S + + PS G ++ + +LL DV S ++GY I V I
Sbjct: 1 MPFFLKELSLTISLHPSYF---GPRMQDYLKAKLLADV-EGTCSGQYGYIICVLDSNTID 56
Query: 600 EGKVRELTGDVL--FPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKS 427
K R + G F V + + +P +GEV+ V + K G F GP+ +
Sbjct: 57 IDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLV 116
Query: 426 MSNYKYIGGEN-AMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
+ K+ N + + +EK + VR K++G R +A F +AT+ D+LG L
Sbjct: 117 PPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTR-TDATEIF-AIATMKEDYLGVL 172
>sptr|Q9HNL1|Q9HNL1 DNA-directed RNA polymerase subunit E'.
Length = 190
Score = 47.4 bits (111), Expect = 3e-04
Identities = 27/108 (25%), Positives = 47/108 (43%)
Frame = -1
Query: 693 IIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEV 514
++ RLL+D R ++ G + V ++ + EG V V + F +T +P EV
Sbjct: 25 LVKRLLQDKLEGRMDEDVGSIVTVTEVHDLGEGAVLPNRPGVYYEAEFDAVTFEPEMQEV 84
Query: 513 MVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDHS 370
+ G V ++ G F+ GPV+ + + Y EN + S
Sbjct: 85 VDGEVVEVVSFGAFVGIGPVDGLLHVSQISDEYLAFDEENQQLASRES 132
>sptr|Q8TVE1|Q8TVE1 DNA-directed RNA polymerase subunit E'.
Length = 183
Score = 47.0 bits (110), Expect = 3e-04
Identities = 30/152 (19%), Positives = 70/152 (46%), Gaps = 7/152 (4%)
Frame = -1
Query: 762 EMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEH-----GYYIAVNQLKAISE 598
E+ V I P+Q + A++ L DV + ++ G+ + V+++ +
Sbjct: 6 ELETTVRIPPTQFTSD---VEDAVLKALENDVEGKLFREDDTGEPIGFVVFVDEILDVEN 62
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
+ G V F + +P++ EV+VG V R+ ++G F++ GP++ + + +
Sbjct: 63 EGIFPGDGASYHRVRFRALVFRPVEREVVVGEVTRVKEYGAFVRLGPLDGLLHVSQILDE 122
Query: 417 YKYIGGENAMFMNDHS--KLEKDTAVRFKVLG 328
Y Y G + + + +L++ ++ ++G
Sbjct: 123 YMYYDGAREALVGEETGRELKRGDVIKVMIIG 154
>sw|P34087|RPB7_YEAST DNA-directed RNA polymerase II 19 kDa
polypeptide (EC 2.7.7.6) (B16).
Length = 171
Score = 45.8 bits (107), Expect = 8e-04
Identities = 40/177 (22%), Positives = 75/177 (42%), Gaps = 3/177 (1%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAIS- 601
+F ++S N+ + PS G +++ + +LLE+V K GY + V I
Sbjct: 1 MFFIKDLSLNITLHPSFF---GPRMKQYLKTKLLEEVEGSCTGK-FGYILCVLDYDNIDI 56
Query: 600 -EGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM 424
G++ G F V + + KP KGEV+ G V +HG ++ GP++
Sbjct: 57 QRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMP 116
Query: 423 SNYKYIGGEN-AMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
+ + G N + + + + +R K+ G + + +I D+LG +
Sbjct: 117 QDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEG--CISQVSSIHAIGSIKEDYLGAI 171
>sptr|O26364|O26364 DNA-dependent RNA polymerase, subunit E'.
Length = 184
Score = 45.4 bits (106), Expect = 0.001
Identities = 27/93 (29%), Positives = 44/93 (47%)
Frame = -1
Query: 693 IIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEV 514
+ V +L + R K G I V +++ I GKV G V+FT + KP E+
Sbjct: 25 VAVEVLNETYVGRMDKNLGQLITVKEIEDIGIGKVIMGDGAAYHEVTFTALFFKPELHEI 84
Query: 513 MVGHVDRILKHGVFLKSGPVESIFLAEKSMSNY 415
+ G V I + G F++ GPV+ + + +Y
Sbjct: 85 VEGEVIEIAEFGAFVRIGPVDGLVHVSQVTDDY 117
>sptr|O59571|O59571 188AA long hypothetical DNA-directed RNA
polymerase subunit E.
Length = 188
Score = 45.4 bits (106), Expect = 0.001
Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Frame = -1
Query: 699 KAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKG 520
K + +L D ++ G +++ ++K + +G + G V F + +P +
Sbjct: 23 KEAAMLVLRDTYEGTYDRDEGVILSIVEVKEVGDGIIVPGDGATYHEVVFDVLVWEPKRD 82
Query: 519 EVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDHSK--LEKDTAV 346
EV+ G V ++ G F++ GP++ + + M +Y N F+ K L+ AV
Sbjct: 83 EVVEGTVVDVVPFGAFIRIGPMDGLVHISQLMDDYVVYDERNKQFVGKEKKYLLKIGDAV 142
Query: 345 RFKVL 331
R +++
Sbjct: 143 RARII 147
>sptr|Q8U439|Q8U439 DNA-directed RNA polymerase, subunit e'.
Length = 189
Score = 43.9 bits (102), Expect = 0.003
Identities = 23/105 (21%), Positives = 47/105 (44%)
Frame = -1
Query: 681 LLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGH 502
+L + K+ G +++ ++K I +G + G V F + +P EV+ G+
Sbjct: 29 ILRETYEGTYDKDEGVILSILEVKDIKDGIIIPGDGATYHEVVFDVLVWEPKIHEVVEGY 88
Query: 501 VDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDHSK 367
V ++ G F++ GP++ + + M +Y N F+ K
Sbjct: 89 VADVMPFGAFIRIGPIDGLVHISQLMDDYVVYDERNKQFVGKEKK 133
>sptr|Q9UY23|Q9UY23 DNA-directed RNA polymerase, subunit E' (RPOE1).
Length = 188
Score = 43.5 bits (101), Expect = 0.004
Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Frame = -1
Query: 699 KAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKG 520
K + +L + + K+ G +++ ++K + +G + G V F + +P +
Sbjct: 23 KEAAMLVLRETYEGKYDKDEGVILSIVEVKEVGDGIIVPGDGATYHEVVFDVLVWEPKQQ 82
Query: 519 EVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDHSK--LEKDTAV 346
EV+ G V + G F++ GP++ + + M +Y N F+ K L+ AV
Sbjct: 83 EVVEGTVVDAVPFGAFVRIGPMDGLVHISQLMDDYVVYDERNKQFVGKEKKYLLKIGDAV 142
Query: 345 RFKVL 331
R +++
Sbjct: 143 RARII 147
>sptr|Q980A3|Q980A3 DNA-directed RNA polymerase, subunit E' (rpoE1)
(EC 2.7.7.6).
Length = 180
Score = 43.1 bits (100), Expect = 0.005
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Frame = -1
Query: 648 KEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFL 469
K+ G +A+ +K EG + G V F IT P+ EV+ G V ++ +G+F+
Sbjct: 40 KDLGLVLAILNVKTSEEGILVFGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGIFV 99
Query: 468 KSGPVES-IFLAEKSMSNYKYIGGENAMFMNDHSK-LEKDTAVRFKVLGFRWMEADRQFQ 295
GP++ + +++ + KY +F K ++K VR +V+ R +
Sbjct: 100 NLGPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGRLPR 159
Query: 294 LLATIAGDFLGPL 256
+ T+ +LG L
Sbjct: 160 IALTMRQPYLGKL 172
>sptr|Q98S95|Q98S95 RNA polymerase II RPB7 subunit-like protein.
Length = 196
Score = 42.7 bits (99), Expect = 0.006
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Frame = -1
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
GK+ VLF V+F + K KGE++ V I G+F +G + +IF++ K +S
Sbjct: 84 GKILPGFSSVLFKVNFQAVVLKIFKGEIIDAIVKNITSFGIFASAG-ILNIFISNKFISQ 142
Query: 417 YKYIGGENAM--FMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
+ F N ++K+ +R K+L ++ Q + I +LG L
Sbjct: 143 DLISQQSQTLFNFKNSTINIKKNDIIRCKILNLKYNTG--SIQAIGCIDDKYLGKL 196
Database: /db/trembl-ebi/tmp/swall
Posted date: Sep 26, 2003 8:29 PM
Number of letters in database: 406,886,216
Number of sequences in database: 1,272,877
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 635,275,916
Number of Sequences: 1272877
Number of extensions: 13721404
Number of successful extensions: 32396
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32386
length of database: 406,886,216
effective HSP length: 122
effective length of database: 251,595,222
effective search space used: 42519592518
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)