BLASTX 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448385.2.9
(708 letters)
Database: /db/trembl-ebi/tmp/swall
1,272,877 sequences; 406,886,216 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sptr|Q8L4F2|Q8L4F2 40S ribosomal protein S23. 288 6e-77
sw|P46297|RS23_FRAAN 40S ribosomal protein S23 (S12). 281 6e-75
sptr|Q9M5Z9|Q9M5Z9 40s ribosomal protein S23. 280 2e-74
sw|P49201|R23B_ARATH 40S ribosomal protein S23-2 (S12). 277 8e-74
sw|Q9SF35|R23A_ARATH 40S ribosomal protein S23-1 (S12). 266 2e-70
sptr|Q9GRJ3|Q9GRJ3 40S ribosomal protein S23. 241 7e-63
sptrnew|EAA01135|EAA01135 AgCP12166 (Fragment). 240 1e-62
sptr|Q86FP7|Q86FP7 40S ribosomal protein S23. 239 2e-62
sw|P90707|RS23_BRUMA 40S ribosomal protein S23. 236 2e-61
sptr|Q8I7X6|Q8I7X6 Ribosomal protein S23. 236 2e-61
sptr|Q962Q7|Q962Q7 Ribosomal protein S23. 236 2e-61
sptr|Q8T3U2|Q8T3U2 GM14585p (CG8415 protein). 236 2e-61
sw|Q19877|RS23_CAEEL 40S ribosomal protein S23. 234 6e-61
sptrnew|AAH54435|AAH54435 Rps23 protein. 234 8e-61
sptrnew|BAC40136|BAC40136 2 days neonate thymus thymic cells cDN... 234 8e-61
sptrnew|BAC34329|BAC34329 2 days neonate thymus thymic cells cDN... 234 8e-61
sw|P39028|RS23_HUMAN 40S ribosomal protein S23. 234 8e-61
sptr|Q90YQ1|Q90YQ1 40S ribosomal protein S23. 233 2e-60
sptr|Q9CWI9|Q9CWI9 2410044J15Rik protein. 233 2e-60
sptrnew|CAD98683|CAD98683 Ribosomal protein S23. 229 3e-59
sptr|O97248|O97248 Putative 40S ribosomal protein S23. 228 4e-59
sptr|Q875M3|Q875M3 RPS23. 228 4e-59
sptrnew|AAO32521|AAO32521 RPS23. 227 1e-58
sptrnew|AAO32520|AAO32520 RPS23. 227 1e-58
sptrnew|AAO32421|AAO32421 RPS23. 227 1e-58
sptrnew|AAO32420|AAO32420 RPS23. 227 1e-58
sptr|Q875Q2|Q875Q2 RPS23. 227 1e-58
sw|P32827|RS23_YEAST 40S ribosomal protein S23 (S28) (YS14) (RP37). 227 1e-58
sptrnew|EAA17828|EAA17828 Ribosomal protein S23. 227 1e-58
sptr|Q873W8|Q873W8 Putative ribosomal protein S28. 226 3e-58
>sptr|Q8L4F2|Q8L4F2 40S ribosomal protein S23.
Length = 142
Score = 288 bits (736), Expect = 6e-77
Identities = 141/142 (99%), Positives = 142/142 (100%)
Frame = +1
Query: 97 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 276
MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
Query: 277 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 456
PNSAIRKCARVQLVKNGKKIAAFVPNDGCLN+IEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
Query: 457 VVKVSGVSLLALFKEKKEKPRS 522
VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142
>sw|P46297|RS23_FRAAN 40S ribosomal protein S23 (S12).
Length = 142
Score = 281 bits (719), Expect = 6e-75
Identities = 137/142 (96%), Positives = 139/142 (97%)
Frame = +1
Query: 97 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 276
MGKTRGMGA RKLK HRR QRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1 MGKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
Query: 277 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 456
PNSAIRKCARVQL+KNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
Query: 457 VVKVSGVSLLALFKEKKEKPRS 522
VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142
>sptr|Q9M5Z9|Q9M5Z9 40s ribosomal protein S23.
Length = 142
Score = 280 bits (715), Expect = 2e-74
Identities = 136/142 (95%), Positives = 139/142 (97%)
Frame = +1
Query: 97 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 276
MGKT GMGA RKLK+HRR QRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1 MGKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
Query: 277 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 456
PNSAIRKCARVQL+KNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
Query: 457 VVKVSGVSLLALFKEKKEKPRS 522
VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142
>sw|P49201|R23B_ARATH 40S ribosomal protein S23-2 (S12).
Length = 142
Score = 277 bits (709), Expect = 8e-74
Identities = 137/142 (96%), Positives = 138/142 (97%)
Frame = +1
Query: 97 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 276
MGKTRGMGAGRKLK R NQRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1 MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
Query: 277 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 456
PNSAIRKCARVQL+KNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
Query: 457 VVKVSGVSLLALFKEKKEKPRS 522
VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142
>sw|Q9SF35|R23A_ARATH 40S ribosomal protein S23-1 (S12).
Length = 142
Score = 266 bits (680), Expect = 2e-70
Identities = 133/142 (93%), Positives = 135/142 (95%)
Frame = +1
Query: 97 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 276
MGKTRGMGAGRKLK R QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQ
Sbjct: 1 MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQ 60
Query: 277 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 456
PNSAIRKCARVQL+KNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
Query: 457 VVKVSGVSLLALFKEKKEKPRS 522
VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142
>sptr|Q9GRJ3|Q9GRJ3 40S ribosomal protein S23.
Length = 143
Score = 241 bits (615), Expect = 7e-63
Identities = 115/143 (80%), Positives = 126/143 (88%), Gaps = 1/143 (0%)
Frame = +1
Query: 97 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAK 273
MGK RG+ RKLK HRR QRW DK YKKSHLG WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAK 60
Query: 274 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 453
QPNSAIRKC RVQL+KNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 454 KVVKVSGVSLLALFKEKKEKPRS 522
KVVKV+ VSLLAL+K+KKE+PRS
Sbjct: 121 KVVKVASVSLLALYKQKKERPRS 143
>sptrnew|EAA01135|EAA01135 AgCP12166 (Fragment).
Length = 174
Score = 240 bits (613), Expect = 1e-62
Identities = 116/143 (81%), Positives = 127/143 (88%), Gaps = 1/143 (0%)
Frame = +1
Query: 97 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAK 273
MGK RG+ RK HRR+QRWADK YKK+HLG WK PFAG+SHAKGIVLEK+G+EAK
Sbjct: 32 MGKPRGIRTARKHIRHRRDQRWADKDYKKAHLGTRWKSNPFAGASHAKGIVLEKVGVEAK 91
Query: 274 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 453
QPNSAIRKC RVQL+KNGKKI AFVP DGCLNYIEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 92 QPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRF 151
Query: 454 KVVKVSGVSLLALFKEKKEKPRS 522
KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 152 KVVKVANVSLLALYKEKKERPRS 174
>sptr|Q86FP7|Q86FP7 40S ribosomal protein S23.
Length = 143
Score = 239 bits (611), Expect = 2e-62
Identities = 114/143 (79%), Positives = 127/143 (88%), Gaps = 1/143 (0%)
Frame = +1
Query: 97 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 273
MGK RG+ RK ++HRR+QRW DK YKK+HLG WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKPRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAK 60
Query: 274 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 453
QPNSAIRKC RVQL+KNGKKI AFVP DGCLNYIEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 454 KVVKVSGVSLLALFKEKKEKPRS 522
KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 121 KVVKVANVSLLALYKEKKERPRS 143
>sw|P90707|RS23_BRUMA 40S ribosomal protein S23.
Length = 143
Score = 236 bits (603), Expect = 2e-61
Identities = 112/143 (78%), Positives = 126/143 (88%), Gaps = 1/143 (0%)
Frame = +1
Query: 97 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 273
MGK +G+ A RKLKTHR+ QRW DK YKK+HLG WK PF +SHAKGIVLEK+G+EAK
Sbjct: 1 MGKPKGIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAK 60
Query: 274 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 453
QPNSAIRKC RVQL+KNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 454 KVVKVSGVSLLALFKEKKEKPRS 522
K+VKV+ SL+ALFK KKE+PRS
Sbjct: 121 KIVKVANTSLIALFKGKKERPRS 143
>sptr|Q8I7X6|Q8I7X6 Ribosomal protein S23.
Length = 143
Score = 236 bits (602), Expect = 2e-61
Identities = 115/143 (80%), Positives = 127/143 (88%), Gaps = 1/143 (0%)
Frame = +1
Query: 97 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 273
MGK RG+ + RKLK HRR QRW DK++KK+HLG K PF G+SHAKGIVLEKIG+EAK
Sbjct: 1 MGKPRGLRSARKLKDHRRQQRWHDKSFKKAHLGTAVKASPFGGASHAKGIVLEKIGVEAK 60
Query: 274 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 453
QPNSAIRKC RVQL+KNGKKI AFVPNDGCLNYIEENDEVL++GFGRKG AVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLVSGFGRKGRAVGDIPGVRF 120
Query: 454 KVVKVSGVSLLALFKEKKEKPRS 522
KVVKV+ VSLLALFKEKKE+PRS
Sbjct: 121 KVVKVANVSLLALFKEKKERPRS 143
>sptr|Q962Q7|Q962Q7 Ribosomal protein S23.
Length = 143
Score = 236 bits (602), Expect = 2e-61
Identities = 112/143 (78%), Positives = 125/143 (87%), Gaps = 1/143 (0%)
Frame = +1
Query: 97 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 273
MGK RG+ RK HRR QRWADK YKK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 60
Query: 274 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 453
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 454 KVVKVSGVSLLALFKEKKEKPRS 522
KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 121 KVVKVANVSLLALYKEKKERPRS 143
>sptr|Q8T3U2|Q8T3U2 GM14585p (CG8415 protein).
Length = 143
Score = 236 bits (602), Expect = 2e-61
Identities = 114/143 (79%), Positives = 125/143 (87%), Gaps = 1/143 (0%)
Frame = +1
Query: 97 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 273
MGK RG+ RK HRR+QRWADK YKK+HLG WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAK 60
Query: 274 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 453
QPNSAIRKC RVQL+KNGKKI AFVP DG LNYIEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 454 KVVKVSGVSLLALFKEKKEKPRS 522
KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 121 KVVKVANVSLLALYKEKKERPRS 143
>sw|Q19877|RS23_CAEEL 40S ribosomal protein S23.
Length = 143
Score = 234 bits (598), Expect = 6e-61
Identities = 109/143 (76%), Positives = 125/143 (87%), Gaps = 1/143 (0%)
Frame = +1
Query: 97 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAK 273
MGK +G+ RKLKTHR+ QRW DK YKK+H+G WK PF G+SHAKGIVLEKIG+EAK
Sbjct: 1 MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAK 60
Query: 274 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 453
QPNSAIRKC RVQL+KNGKKI AFVPNDGCLN++EENDEVL++GFGR GHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRF 120
Query: 454 KVVKVSGVSLLALFKEKKEKPRS 522
K+VKV+ SL+ALFK KKE+PRS
Sbjct: 121 KIVKVANTSLIALFKGKKERPRS 143
>sptrnew|AAH54435|AAH54435 Rps23 protein.
Length = 143
Score = 234 bits (597), Expect = 8e-61
Identities = 112/143 (78%), Positives = 127/143 (88%), Gaps = 1/143 (0%)
Frame = +1
Query: 97 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 273
MGK RG+ RKL++HRR+Q+W DK YKK+HLG K PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 274 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 453
QPNSAIRKC RVQL+KNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 454 KVVKVSGVSLLALFKEKKEKPRS 522
KVVKV+ VSLLAL+K KKE+PRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>sptrnew|BAC40136|BAC40136 2 days neonate thymus thymic cells cDNA,
RIKEN full-length enriched library, clone:E430003K16
product:unclassifiable, full insert sequence.
Length = 143
Score = 234 bits (597), Expect = 8e-61
Identities = 112/143 (78%), Positives = 127/143 (88%), Gaps = 1/143 (0%)
Frame = +1
Query: 97 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 273
MGK RG+ RKL++HRR+Q+W DK YKK+HLG K PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 274 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 453
QPNSAIRKC RVQL+KNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 454 KVVKVSGVSLLALFKEKKEKPRS 522
KVVKV+ VSLLAL+K KKE+PRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>sptrnew|BAC34329|BAC34329 2 days neonate thymus thymic cells cDNA,
RIKEN full-length enriched library, clone:C920005B22
product:ribosomal protein S23, full insert sequence.
Length = 143
Score = 234 bits (597), Expect = 8e-61
Identities = 112/143 (78%), Positives = 127/143 (88%), Gaps = 1/143 (0%)
Frame = +1
Query: 97 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 273
MGK RG+ RKL++HRR+Q+W DK YKK+HLG K PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 274 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 453
QPNSAIRKC RVQL+KNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 454 KVVKVSGVSLLALFKEKKEKPRS 522
KVVKV+ VSLLAL+K KKE+PRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>sw|P39028|RS23_HUMAN 40S ribosomal protein S23.
Length = 143
Score = 234 bits (597), Expect = 8e-61
Identities = 112/143 (78%), Positives = 127/143 (88%), Gaps = 1/143 (0%)
Frame = +1
Query: 97 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 273
MGK RG+ RKL++HRR+Q+W DK YKK+HLG K PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 274 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 453
QPNSAIRKC RVQL+KNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 454 KVVKVSGVSLLALFKEKKEKPRS 522
KVVKV+ VSLLAL+K KKE+PRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>sptr|Q90YQ1|Q90YQ1 40S ribosomal protein S23.
Length = 143
Score = 233 bits (594), Expect = 2e-60
Identities = 112/143 (78%), Positives = 125/143 (87%), Gaps = 1/143 (0%)
Frame = +1
Query: 97 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 273
MGK RG+ RKL+ HRR Q+W DK YKK+HLG K PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKCRGLRTARKLRDHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 274 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 453
QPNSAIRKC RVQL+KNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 454 KVVKVSGVSLLALFKEKKEKPRS 522
KVVKV+ VSLLAL+K KKE+PRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>sptr|Q9CWI9|Q9CWI9 2410044J15Rik protein.
Length = 143
Score = 233 bits (594), Expect = 2e-60
Identities = 111/143 (77%), Positives = 127/143 (88%), Gaps = 1/143 (0%)
Frame = +1
Query: 97 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 273
MG+ RG+ RKL++HRR+Q+W DK YKK+HLG K PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGRCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 274 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 453
QPNSAIRKC RVQL+KNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 454 KVVKVSGVSLLALFKEKKEKPRS 522
KVVKV+ VSLLAL+K KKE+PRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>sptrnew|CAD98683|CAD98683 Ribosomal protein S23.
Length = 145
Score = 229 bits (583), Expect = 3e-59
Identities = 108/142 (76%), Positives = 125/142 (88%), Gaps = 1/142 (0%)
Frame = +1
Query: 100 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQ 276
GK +G+ R+L+T RR Q+WADK YK+++LG +K PF G+SHAKGIV+E+ GIEAKQ
Sbjct: 4 GKPKGINTARELRTRRRTQKWADKQYKRANLGTRYKSNPFGGASHAKGIVVERFGIEAKQ 63
Query: 277 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 456
PNSA+RKC RVQL+KNGKKI AFVP DGCLNYI+ENDEVL+AGFGRKGH+VGDIPGVRFK
Sbjct: 64 PNSAVRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRKGHSVGDIPGVRFK 123
Query: 457 VVKVSGVSLLALFKEKKEKPRS 522
VKVSGVSLLALFKEKKEKPRS
Sbjct: 124 AVKVSGVSLLALFKEKKEKPRS 145
>sptr|O97248|O97248 Putative 40S ribosomal protein S23.
Length = 145
Score = 228 bits (582), Expect = 4e-59
Identities = 109/142 (76%), Positives = 123/142 (86%), Gaps = 1/142 (0%)
Frame = +1
Query: 100 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQ 276
GK G+ A RKL+ RR QRWADK+YKKSHLG WK PF GSSHAKGIV+EK+ IEAKQ
Sbjct: 4 GKPSGLRAARKLRIRRRTQRWADKSYKKSHLGTRWKSNPFRGSSHAKGIVVEKVAIEAKQ 63
Query: 277 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 456
PNSA RKC RVQL+KNGKKI AFVP DGCLN+I+ENDEVL++GFGR GH+VGD+PGV+FK
Sbjct: 64 PNSAYRKCVRVQLIKNGKKITAFVPGDGCLNFIDENDEVLVSGFGRSGHSVGDLPGVKFK 123
Query: 457 VVKVSGVSLLALFKEKKEKPRS 522
VVKV+ VSLLALFKEKKEKPRS
Sbjct: 124 VVKVARVSLLALFKEKKEKPRS 145
>sptr|Q875M3|Q875M3 RPS23.
Length = 145
Score = 228 bits (582), Expect = 4e-59
Identities = 111/142 (78%), Positives = 124/142 (87%), Gaps = 1/142 (0%)
Frame = +1
Query: 100 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQ 276
GK RG+ + RKL+ HRRN RWA+ YKK LG +K PF GSSHAKGIVLEKIGIE+KQ
Sbjct: 4 GKPRGLNSARKLRVHRRNNRWAETTYKKRLLGTAFKSSPFGGSSHAKGIVLEKIGIESKQ 63
Query: 277 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 456
PNSAIRKC RVQL+KNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFK
Sbjct: 64 PNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFK 123
Query: 457 VVKVSGVSLLALFKEKKEKPRS 522
VVKVSGVSLLAL+KEKKEKPRS
Sbjct: 124 VVKVSGVSLLALWKEKKEKPRS 145
>sptrnew|AAO32521|AAO32521 RPS23.
Length = 145
Score = 227 bits (579), Expect = 1e-58
Identities = 110/142 (77%), Positives = 124/142 (87%), Gaps = 1/142 (0%)
Frame = +1
Query: 100 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQ 276
GK RG+ + RKL+ HRRN RWA+ YKK LG +K PF GSSHAKGIVLEK+GIE+KQ
Sbjct: 4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQ 63
Query: 277 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 456
PNSAIRKC RVQL+KNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFK
Sbjct: 64 PNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFK 123
Query: 457 VVKVSGVSLLALFKEKKEKPRS 522
VVKVSGVSLLAL+KEKKEKPRS
Sbjct: 124 VVKVSGVSLLALWKEKKEKPRS 145
>sptrnew|AAO32520|AAO32520 RPS23.
Length = 145
Score = 227 bits (579), Expect = 1e-58
Identities = 110/142 (77%), Positives = 124/142 (87%), Gaps = 1/142 (0%)
Frame = +1
Query: 100 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQ 276
GK RG+ + RKL+ HRRN RWA+ YKK LG +K PF GSSHAKGIVLEK+GIE+KQ
Sbjct: 4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQ 63
Query: 277 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 456
PNSAIRKC RVQL+KNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFK
Sbjct: 64 PNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFK 123
Query: 457 VVKVSGVSLLALFKEKKEKPRS 522
VVKVSGVSLLAL+KEKKEKPRS
Sbjct: 124 VVKVSGVSLLALWKEKKEKPRS 145
>sptrnew|AAO32421|AAO32421 RPS23.
Length = 145
Score = 227 bits (579), Expect = 1e-58
Identities = 110/142 (77%), Positives = 124/142 (87%), Gaps = 1/142 (0%)
Frame = +1
Query: 100 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQ 276
GK RG+ + RKL+ HRRN RWA+ YKK LG +K PF GSSHAKGIVLEK+GIE+KQ
Sbjct: 4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQ 63
Query: 277 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 456
PNSAIRKC RVQL+KNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFK
Sbjct: 64 PNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFK 123
Query: 457 VVKVSGVSLLALFKEKKEKPRS 522
VVKVSGVSLLAL+KEKKEKPRS
Sbjct: 124 VVKVSGVSLLALWKEKKEKPRS 145
>sptrnew|AAO32420|AAO32420 RPS23.
Length = 145
Score = 227 bits (579), Expect = 1e-58
Identities = 110/142 (77%), Positives = 124/142 (87%), Gaps = 1/142 (0%)
Frame = +1
Query: 100 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQ 276
GK RG+ + RKL+ HRRN RWA+ YKK LG +K PF GSSHAKGIVLEK+GIE+KQ
Sbjct: 4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQ 63
Query: 277 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 456
PNSAIRKC RVQL+KNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFK
Sbjct: 64 PNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFK 123
Query: 457 VVKVSGVSLLALFKEKKEKPRS 522
VVKVSGVSLLAL+KEKKEKPRS
Sbjct: 124 VVKVSGVSLLALWKEKKEKPRS 145
>sptr|Q875Q2|Q875Q2 RPS23.
Length = 145
Score = 227 bits (579), Expect = 1e-58
Identities = 109/142 (76%), Positives = 126/142 (88%), Gaps = 1/142 (0%)
Frame = +1
Query: 100 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQ 276
GK RG+ + RKL+ HRRN RWA+++YKK LG +K PF GSSHAKGIVLEKIGIE+KQ
Sbjct: 4 GKPRGLNSARKLRVHRRNNRWAEQSYKKRLLGTAFKSSPFGGSSHAKGIVLEKIGIESKQ 63
Query: 277 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 456
PNSAIRKC RVQL+KNGK++ AFVPNDGCLN+++ENDEVL+AGFG+KG A GDIPGVRFK
Sbjct: 64 PNSAIRKCVRVQLIKNGKRVTAFVPNDGCLNFVDENDEVLLAGFGKKGKAKGDIPGVRFK 123
Query: 457 VVKVSGVSLLALFKEKKEKPRS 522
VVKVSGVSLLAL+KEKKEKPRS
Sbjct: 124 VVKVSGVSLLALWKEKKEKPRS 145
>sw|P32827|RS23_YEAST 40S ribosomal protein S23 (S28) (YS14) (RP37).
Length = 145
Score = 227 bits (579), Expect = 1e-58
Identities = 110/142 (77%), Positives = 124/142 (87%), Gaps = 1/142 (0%)
Frame = +1
Query: 100 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQ 276
GK RG+ + RKL+ HRRN RWA+ YKK LG +K PF GSSHAKGIVLEK+GIE+KQ
Sbjct: 4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQ 63
Query: 277 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 456
PNSAIRKC RVQL+KNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFK
Sbjct: 64 PNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFK 123
Query: 457 VVKVSGVSLLALFKEKKEKPRS 522
VVKVSGVSLLAL+KEKKEKPRS
Sbjct: 124 VVKVSGVSLLALWKEKKEKPRS 145
>sptrnew|EAA17828|EAA17828 Ribosomal protein S23.
Length = 155
Score = 227 bits (578), Expect = 1e-58
Identities = 108/142 (76%), Positives = 122/142 (85%), Gaps = 1/142 (0%)
Frame = +1
Query: 100 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQ 276
GK G+ + RKL+ RR QRWADK YKKSHLG WK PF GSSHAKGIV+EK+ IEAKQ
Sbjct: 14 GKPSGLRSARKLRIRRRTQRWADKGYKKSHLGTRWKSNPFRGSSHAKGIVVEKVAIEAKQ 73
Query: 277 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 456
PNSA RKC RVQL+KNGKKI AFVP DGCLN+I+ENDEVL++GFGR GH+VGD+PGV+FK
Sbjct: 74 PNSAYRKCVRVQLIKNGKKITAFVPGDGCLNFIDENDEVLVSGFGRSGHSVGDLPGVKFK 133
Query: 457 VVKVSGVSLLALFKEKKEKPRS 522
VVKV+ VSLLALFKEKKEKPRS
Sbjct: 134 VVKVARVSLLALFKEKKEKPRS 155
>sptr|Q873W8|Q873W8 Putative ribosomal protein S28.
Length = 145
Score = 226 bits (575), Expect = 3e-58
Identities = 110/142 (77%), Positives = 122/142 (85%), Gaps = 1/142 (0%)
Frame = +1
Query: 100 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQ 276
GK RG+ A RKL HRR QRWAD YKK LG +K PF G+SHAKGIVLEK+G+EAKQ
Sbjct: 4 GKPRGLNAARKLSNHRREQRWADLHYKKRLLGTAFKSSPFGGASHAKGIVLEKVGVEAKQ 63
Query: 277 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 456
PNSAIRKC +VQL+KNGKK+ AFVPNDGCLN+I+ENDEVL+AGFGRKG A GDIPGVRFK
Sbjct: 64 PNSAIRKCVKVQLIKNGKKVTAFVPNDGCLNFIDENDEVLLAGFGRKGKAKGDIPGVRFK 123
Query: 457 VVKVSGVSLLALFKEKKEKPRS 522
VVKVSGV LLAL+KEKKEKPRS
Sbjct: 124 VVKVSGVGLLALWKEKKEKPRS 145
Database: /db/trembl-ebi/tmp/swall
Posted date: Sep 26, 2003 8:29 PM
Number of letters in database: 406,886,216
Number of sequences in database: 1,272,877
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,611,438
Number of Sequences: 1272877
Number of extensions: 11349771
Number of successful extensions: 42185
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41754
length of database: 406,886,216
effective HSP length: 119
effective length of database: 255,413,853
effective search space used: 29628006948
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)