BLASTX 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440450.2.1
(1291 letters)
Database: /db/trembl-ebi/tmp/swall
1,272,877 sequences; 406,886,216 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sptr|Q9FY12|Q9FY12 Replication protein A2. 190 3e-47
sptr|Q9AVM2|Q9AVM2 Replication protein A 30kDa. 189 6e-47
sptrnew|AAP58374|AAP58374 RPA 32kDa. 175 1e-42
sptr|Q9ZQ19|Q9ZQ19 Putative replication protein A1. 160 5e-38
sptr|Q8LFJ8|Q8LFJ8 Putative replication factor A. 135 2e-30
sptr|Q9M8T4|Q9M8T4 Putative replication factor A. 134 2e-30
sw|P15927|RFA2_HUMAN Replication protein A 32 kDa subunit (RP-A)... 95 2e-18
sw|Q92373|RFA2_SCHPO Replication factor-A protein 2 (Single-stra... 93 7e-18
sptr|Q99KL9|Q99KL9 Similar to replication protein A2. 91 3e-17
sw|Q62193|RFA2_MOUSE Replication protein A 32 kDa subunit (RP-A)... 91 3e-17
sptr|Q8NJM1|Q8NJM1 Possible replication factor-a protein. 90 6e-17
sw|Q63528|RFA2_RAT Replication protein A 32 kDa subunit (RP-A) (... 88 2e-16
sptrnew|EAA32731|EAA32731 Hypothetical protein. 78 2e-13
sw|P26754|RFA2_YEAST Replication factor-A protein 2 (RF-A) (DNA ... 74 6e-12
sptr|Q8SRS2|Q8SRS2 Replication factor A protein 2 (32KDA subunit). 73 1e-11
sptr|Q9DDG4|Q9DDG4 Replication protein A. 69 1e-10
sw|Q13156|RFA4_HUMAN Replication protein A 30 kDa subunit (RP-A)... 60 5e-08
sptr|Q9VIH1|Q9VIH1 CG9273 protein (GM04951p). 58 3e-07
sptr|Q8SXG3|Q8SXG3 RH07841p. 57 6e-07
sptrnew|EAA43853|EAA43853 ENSANGP00000023457 (Fragment). 50 9e-05
sptrnew|EAA12428|EAA12428 ENSANGP00000018307. 50 9e-05
sw|Q23697|RFA2_CRIFA Replication protein A 28 kDa subunit (RP-A)... 40 0.056
sptrnew|EAA19570|EAA19570 Hypothetical protein. 39 0.21
sptr|Q81Z00|Q81Z00 Prophage LambdaBa04, tape measure protein, pu... 35 3.1
sptr|Q8ENK3|Q8ENK3 Phosphoglycolate phosphatase. 34 4.0
sptr|Q9AAZ1|Q9AAZ1 Metallo-beta-lactamase family protein. 34 4.0
sptr|Q8W200|Q8W200 Waxy (Fragment). 33 6.9
>sptr|Q9FY12|Q9FY12 Replication protein A2.
Length = 279
Score = 190 bits (483), Expect = 3e-47
Identities = 103/263 (39%), Positives = 157/263 (59%), Gaps = 23/263 (8%)
Frame = -2
Query: 1095 SQSTVVPENSGLSKGRSAQTLLPLTVKQTMDAAQT--SGDR-SNFAINGVEVSTIRLVGR 925
S +++ SK R A + +PLTVKQ +A Q+ +G++ + F ++GVE + +RLVG
Sbjct: 17 SSQNAAADSTTPSKSRGASSTMPLTVKQISEAQQSGITGEKGAPFVVDGVETANVRLVGL 76
Query: 924 MLGKVERVTDVVFTLDDGTGKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRH 745
+ GK ER TDV FT+DDGTG++D RW N+ +D+ E A N YV VIG LKG Q ++
Sbjct: 77 VSGKTERNTDVSFTIDDGTGRLDFIRWVNDGADSAETAAVQNGMYVSVIGSLKGLQERKR 136
Query: 744 VVAYAVRRVTNFNEITCHFLHCIQVHMELPGLKQIYSSAATYGGVAHAPSQ-------PN 586
A+A+R VT++NE+T HF+ C+++H+E QI S A TY + + S P
Sbjct: 137 ATAFAIRPVTDYNEVTLHFIQCVRMHLE-NTKSQIGSPAKTYSAMGSSSSNGFSEMTTPT 195
Query: 585 PVDGN-------------YISNLVLSVFHDPSVMDQEHGLHIKDVIDRLKLPDDVVSAAI 445
V N ++ VL+VF +P+ ++ EHG+HI +++ R +LP+ + AI
Sbjct: 196 SVKSNPAPVLSVTNGSKTDLNTEVLNVFREPANVESEHGVHIDEIVKRFRLPEAKIKVAI 255
Query: 444 QGHVDVGNIYNTIDDFHYKSVRN 376
D+G+IY+TID+ HYKS N
Sbjct: 256 DYLADIGHIYSTIDESHYKSAFN 278
>sptr|Q9AVM2|Q9AVM2 Replication protein A 30kDa.
Length = 279
Score = 189 bits (481), Expect = 6e-47
Identities = 103/263 (39%), Positives = 157/263 (59%), Gaps = 23/263 (8%)
Frame = -2
Query: 1095 SQSTVVPENSGLSKGRSAQTLLPLTVKQTMDAAQT--SGDR-SNFAINGVEVSTIRLVGR 925
S +++ SK R A + +PLTVKQ +A Q+ +G++ + F ++GVE + +RLVG
Sbjct: 17 SSQNAAADSTTPSKSRGASSTMPLTVKQISEAQQSGITGEKGAPFVVDGVETANVRLVGL 76
Query: 924 MLGKVERVTDVVFTLDDGTGKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRH 745
+ GK ER TDV F +DDGTG++D RW N+ +D+ E A N YV VIG LKG Q ++
Sbjct: 77 VSGKTERNTDVSFMIDDGTGRLDFIRWVNDGADSAETAAVQNGMYVSVIGSLKGLQERKR 136
Query: 744 VVAYAVRRVTNFNEITCHFLHCIQVHMELPGLKQIYSSAATYGGVAHAPSQ-------PN 586
A+A+R VT++NE+T HF+ C+++H+E QI S A TY + + S P
Sbjct: 137 ATAFAIRPVTDYNEVTLHFIQCVRMHLE-NTKSQIGSPAKTYSAMGSSSSNGFSEMTTPT 195
Query: 585 PVDGN-------------YISNLVLSVFHDPSVMDQEHGLHIKDVIDRLKLPDDVVSAAI 445
V N ++ VL+VF +P+ ++ EHG+HI +++ RL+LP+ + AI
Sbjct: 196 SVKSNPAPVLSVTNGSKTDLNTEVLNVFREPANVESEHGVHIDEIVKRLRLPEAKIKVAI 255
Query: 444 QGHVDVGNIYNTIDDFHYKSVRN 376
D+G+IY+TID+ HYKS N
Sbjct: 256 DYLADIGHIYSTIDESHYKSAFN 278
>sptrnew|AAP58374|AAP58374 RPA 32kDa.
Length = 273
Score = 175 bits (444), Expect = 1e-42
Identities = 101/243 (41%), Positives = 142/243 (58%), Gaps = 19/243 (7%)
Frame = -2
Query: 1059 SKGRSAQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTL 880
+K R +Q L+P+TVKQ +A+Q+ ++SNFAINGV+++ + LVG + K ER TDV F L
Sbjct: 31 TKSRDSQGLVPVTVKQISEASQSGDEKSNFAINGVDLTNVTLVGMVYEKTERNTDVNFVL 90
Query: 879 DDGTGKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEI 700
DDGTG+I RW NE D+KEM + +N+ YV V G LK FQG + + A++VR VTNF+EI
Sbjct: 91 DDGTGRIKCRRWVNETFDSKEMEEVSNDMYVRVYGNLKSFQGVKQLGAFSVRPVTNFDEI 150
Query: 699 TCHFLHCIQVHM----ELPGLKQIYS----------SAATYGGVAHAPSQPN----PVDG 574
HF+ CI H+ +L G Y +A G + APS P DG
Sbjct: 151 PFHFIDCIHSHLLAKVKLEGTPSTYPPTNSSINTPVKSALNG--SQAPSNPGYTQYSTDG 208
Query: 573 -NYISNLVLSVFHDPSVMDQEHGLHIKDVIDRLKLPDDVVSAAIQGHVDVGNIYNTIDDF 397
LV+ S M E G+H++++ LKLP D + +++ D G +Y+TIDD
Sbjct: 209 LEDCDKLVIDYLQQHSSMLDERGIHVEELARELKLPLDRIRLSVKALEDDGLVYSTIDDS 268
Query: 396 HYK 388
HYK
Sbjct: 269 HYK 271
>sptr|Q9ZQ19|Q9ZQ19 Putative replication protein A1.
Length = 279
Score = 160 bits (404), Expect = 5e-38
Identities = 91/257 (35%), Positives = 145/257 (56%), Gaps = 18/257 (7%)
Frame = -2
Query: 1098 PSQSTVVPENSGLSKGRSAQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRML 919
PSQ+ +S +K R Q L+P+TVKQ + Q+SG++S ING+ ++ + LVG +
Sbjct: 23 PSQA--YESSSSTAKNRDFQGLVPVTVKQITECFQSSGEKSGLVINGISLTNVSLVGLVC 80
Query: 918 GKVE-RVTDVVFTLDDGTGKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHV 742
K E +VT+V FTLDDGTG+ID RW +E DA+EM + YV + G LK FQGK +
Sbjct: 81 DKDESKVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVRDGTYVRLSGHLKTFQGKTQL 140
Query: 741 VAYAVRRVTNFNEITCHFLHCIQVH--------MELPGLKQIYSSAATYGGVAHAPSQPN 586
+ ++VR + +FNE+T H++ CI + ++ + Q ++ G + + N
Sbjct: 141 LVFSVRPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVTQSVNTTFQGGSNTNQATLLN 200
Query: 585 PV------DGNYISNL---VLSVFHDPSVMDQEHGLHIKDVIDRLKLPDDVVSAAIQGHV 433
PV DGN NL +L P+ ++ G+HI ++ +LK+P + + +Q
Sbjct: 201 PVVSSQNNDGNGRKNLDDMILDYLKQPACTARQQGIHIDEIAQQLKIPKNKLEGVVQSLE 260
Query: 432 DVGNIYNTIDDFHYKSV 382
G IY+TID++H+K V
Sbjct: 261 GDGLIYSTIDEYHFKHV 277
>sptr|Q8LFJ8|Q8LFJ8 Putative replication factor A.
Length = 278
Score = 135 bits (339), Expect = 2e-30
Identities = 94/262 (35%), Positives = 139/262 (53%), Gaps = 21/262 (8%)
Frame = -2
Query: 1098 PSQSTV-VPENSGLSKGRSAQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRM 922
PSQ+T E+S K R +TLLPLT+KQ + +A T+G+ SNF+I+GV++ T+ +VGR+
Sbjct: 19 PSQATTQAHESSSSLKNRDVRTLLPLTLKQ-LSSASTTGE-SNFSIDGVDIKTVVIVGRI 76
Query: 921 LGKVERVTDVVFTLDDGTGKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHV 742
R+T V F +DDGTG +D RW + + +EM YV + G LK FQGKR V
Sbjct: 77 SRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVKLGMYVRLHGHLKIFQGKRSV 136
Query: 741 VAYAVRRVTNFNEITCHFLHCIQVHM--------------ELPGLKQIYSSAAT------ 622
++VR VT+FNEI HF C+ VHM P + YS+ T
Sbjct: 137 NVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITQDTATPRPQMPYSTMPTPAKPYQ 196
Query: 621 YGGVAHAPSQPNPVDGNYISNLVLSVFHDPSVMDQEHGLHIKDVIDRLKLPDDVVSAAIQ 442
G P+Q N + + VL+ + P + E G+H + L++P V A++
Sbjct: 197 TGPSNQFPNQFND-SMHGVKQTVLNYLNQPMHIVSEAGVHCDIIARELRIPLLQVKEALE 255
Query: 441 GHVDVGNIYNTIDDFHYKSVRN 376
+ G IY+T+D+ +KS N
Sbjct: 256 QLSNDGCIYSTLDETCFKSTAN 277
>sptr|Q9M8T4|Q9M8T4 Putative replication factor A.
Length = 282
Score = 134 bits (338), Expect = 2e-30
Identities = 91/266 (34%), Positives = 139/266 (52%), Gaps = 25/266 (9%)
Frame = -2
Query: 1098 PSQSTV-VPENSGLSKGRSAQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRM 922
PSQ+T E+S K R +TLLPLT+KQ + +A T+G+ SNF+I+GV++ T+ +VGR+
Sbjct: 19 PSQATTQAHESSSSLKNRDVRTLLPLTLKQ-LSSASTTGE-SNFSIDGVDIKTVVIVGRI 76
Query: 921 LGKVERVTDVVFTLDDGTGKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHV 742
R+T V F +DDGTG +D RW + + +EM YV + G LK FQGKR V
Sbjct: 77 SRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVKLGMYVRLHGHLKIFQGKRSV 136
Query: 741 VAYAVRRVTNFNEITCHFLHCIQVHM------------------------ELPGLKQIYS 634
++VR VT+FNEI HF C+ VHM +P + Y
Sbjct: 137 NVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITQDTATPRPQMPYSTMPTPAKPYQ 196
Query: 633 SAATYGGVAHAPSQPNPVDGNYISNLVLSVFHDPSVMDQEHGLHIKDVIDRLKLPDDVVS 454
+ + + P+Q N + + VL+ + P + E G+H + L++P V
Sbjct: 197 TGPSNQNLFQFPNQFND-SMHGVKQTVLNYLNQPMHIVSEAGVHCDIIARELRIPLLQVK 255
Query: 453 AAIQGHVDVGNIYNTIDDFHYKSVRN 376
A++ + G IY+T+D+ +KS N
Sbjct: 256 EALEQLSNDGCIYSTLDETCFKSTAN 281
>sw|P15927|RFA2_HUMAN Replication protein A 32 kDa subunit (RP-A)
(RF-A) (Replication factor-A protein 2).
Length = 270
Score = 95.1 bits (235), Expect = 2e-18
Identities = 68/238 (28%), Positives = 112/238 (47%), Gaps = 18/238 (7%)
Frame = -2
Query: 1044 AQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGTG 865
AQ ++P T+ Q + A F I VE+S + +VG + + T++V+ +DD T
Sbjct: 43 AQHIVPCTISQLLSATLVD---EVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTA 99
Query: 864 K-IDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHF 688
+DV +W + + E E YV V G L+ FQ K+ +VA+ + + + NE T H
Sbjct: 100 APMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHI 159
Query: 687 LHCIQVHMEL----------------PGLKQIYSSAATYGGVAHAPSQPNPVDGNYISNL 556
L I HM L PG+ S A +GG + P+ V N + NL
Sbjct: 160 LEVINAHMVLSKANSQPSAGRAPISNPGM----SEAGNFGGNSFMPANGLTVAQNQVLNL 215
Query: 555 VLSVFHDPSVMDQEHGLHIKDVIDRLK-LPDDVVSAAIQGHVDVGNIYNTIDDFHYKS 385
+ + GL+ +D+ ++LK + + A+ + G+IY+T+DD H+KS
Sbjct: 216 I-------KACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDDHFKS 266
>sw|Q92373|RFA2_SCHPO Replication factor-A protein 2 (Single-stranded
DNA-binding protein P30 subunit).
Length = 279
Score = 93.2 bits (230), Expect = 7e-18
Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 17/235 (7%)
Frame = -2
Query: 1035 LLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGTGKID 856
L P+T+KQ ++A+Q D + F I+GVEV + VG + + T+ + ++DGTG I+
Sbjct: 50 LRPVTIKQILNASQVHAD-AEFKIDGVEVGQVTFVGVLRNIHAQTTNTTYQIEDGTGMIE 108
Query: 855 VNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHFLHCI 676
V WE+ +++ + YV V G +K F GK ++ + +R + + NE+ HFL I
Sbjct: 109 VRHWEH----IDALSELATDTYVRVYGNIKIFSGKIYIASQYIRTIKDHNEVHFHFLEAI 164
Query: 675 QVHMELPGLKQIYSSAATYG-GVAHAPSQPNPVDGNYISN----------------LVLS 547
VH+ + A G G ++A N + N +N V+
Sbjct: 165 AVHLHFTQKANAVNGANAPGYGTSNALGY-NNISSNGAANSLEQKLAEYSLTPAQMTVMQ 223
Query: 546 VFHDPSVMDQEHGLHIKDVIDRLKLPDDVVSAAIQGHVDVGNIYNTIDDFHYKSV 382
H S + G+H++ + + P ++A G IY TID+ H+KSV
Sbjct: 224 AIH--SAPETNEGVHVRQLAQSVG-PGIDLTAVTDFLQQEGIIYTTIDENHFKSV 275
>sptr|Q99KL9|Q99KL9 Similar to replication protein A2.
Length = 270
Score = 91.3 bits (225), Expect = 3e-17
Identities = 67/231 (29%), Positives = 111/231 (48%), Gaps = 11/231 (4%)
Frame = -2
Query: 1044 AQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGTG 865
AQ ++P T+ Q + A T F I VE+S + +VG + + T++V+ +DD T
Sbjct: 43 AQHIVPCTISQLLSATLTD---EVFRIGDVEISQVTIVGIIRHAEKAPTNIVYKIDDMTA 99
Query: 864 K-IDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHF 688
+DV +W + + E A E YV V G L+ FQ K+ +VA+ + + + NE T H
Sbjct: 100 PPMDVRQWVDTDDASGENAVVPPETYVKVAGHLRSFQNKKSLVAFKIIPLEDMNEFTAHI 159
Query: 687 LHCIQVHMELPGLKQIYSSAATYGGVAHAPSQPNPVDGN---------YISNLVLSVFHD 535
L + HM L +SA S+P GN + N VL++
Sbjct: 160 LEVVNSHMML-SKSNSQASAGRPSMSNPGMSEPGNFSGNNFMPANGLTVVQNQVLNLI-- 216
Query: 534 PSVMDQEHGLHIKDVIDRLK-LPDDVVSAAIQGHVDVGNIYNTIDDFHYKS 385
+ GL+ +D+ +L+ +P + A+ + G+IY+T+DD H+KS
Sbjct: 217 -KACPRPEGLNFQDLRSQLQHMPVPSIKQAVDFLCNEGHIYSTVDDDHFKS 266
>sw|Q62193|RFA2_MOUSE Replication protein A 32 kDa subunit (RP-A)
(RF-A) (Replication factor-A protein 2).
Length = 270
Score = 91.3 bits (225), Expect = 3e-17
Identities = 66/238 (27%), Positives = 113/238 (47%), Gaps = 18/238 (7%)
Frame = -2
Query: 1044 AQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGTG 865
AQ ++P T+ Q + A T F I VE+S + +VG + + T++V+ +DD T
Sbjct: 43 AQHIVPCTISQLLSATLTD---EVFRIGDVEISQVTIVGIIRHAEKAPTNIVYKIDDMTA 99
Query: 864 K-IDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHF 688
+DV +W + + E A E YV V G L+ FQ K+ +VA+ + + + NE T H
Sbjct: 100 PPMDVRQWVDTDDASGENAVVPPETYVKVAGHLRSFQNKKSLVAFKIIPLEDMNEFTAHI 159
Query: 687 LHCIQVHMEL----------------PGLKQIYSSAATYGGVAHAPSQPNPVDGNYISNL 556
L + HM L PG+ + ++ + G P+ V N + NL
Sbjct: 160 LEVVNSHMMLSKPNSQASAGRPSMSNPGMSESFN----FSGNNFMPANRLTVVQNQVLNL 215
Query: 555 VLSVFHDPSVMDQEHGLHIKDVIDRLK-LPDDVVSAAIQGHVDVGNIYNTIDDFHYKS 385
+ + GL+ +D+ +L+ +P + A+ + G+IY+T+DD H+KS
Sbjct: 216 I-------KACPRPEGLNFQDLRSQLQHMPVPSIKQAVDFLCNEGHIYSTVDDDHFKS 266
>sptr|Q8NJM1|Q8NJM1 Possible replication factor-a protein.
Length = 274
Score = 90.1 bits (222), Expect = 6e-17
Identities = 69/227 (30%), Positives = 113/227 (49%), Gaps = 14/227 (6%)
Frame = -2
Query: 1038 TLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGTGKI 859
TL P+TVKQ +DA+Q + + F I+G + +++ +G++ + T+V + +DDGTG+I
Sbjct: 43 TLRPITVKQALDASQPYPEAA-FQIDGADAASVCFIGQVRNISSQSTNVTYKIDDGTGEI 101
Query: 858 DVNRW-ENEASDAKEMADAN---NENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCH 691
+V +W + + +D E D +N V G +K F KR+V A+ VR TN NE+ CH
Sbjct: 102 EVKQWIDTQTADTMETDDGKAGTGKNQVF--GKIKSFGNKRYVGAHCVRPTTNLNEVHCH 159
Query: 690 FLHCIQVHMEL---PGLKQIYSSAATYGGVAHAPSQPNPVDGNYISNL------VLSVFH 538
L +H+ P A+ G A A G SNL V++
Sbjct: 160 LLEAAAIHLFFTRGPPGGGAAGGASGAGANADAAMGGANDYGTGNSNLPAMSPAARRVYN 219
Query: 537 DPSVMDQEH-GLHIKDVIDRLKLPDDVVSAAIQGHVDVGNIYNTIDD 400
Q + GLH + + +L LP V+ A + + G I++T+D+
Sbjct: 220 LLKTEPQSNEGLHAQLIAAKLNLPMPDVARAGEELLTAGVIFSTVDE 266
>sw|Q63528|RFA2_RAT Replication protein A 32 kDa subunit (RP-A) (RF-A)
(Replication factor-A protein 2) (Fragment).
Length = 266
Score = 88.2 bits (217), Expect = 2e-16
Identities = 67/235 (28%), Positives = 111/235 (47%), Gaps = 15/235 (6%)
Frame = -2
Query: 1044 AQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGTG 865
AQ ++P T+ Q + A T F I VE+S + +VG + + T++V+ +DD T
Sbjct: 39 AQHIVPCTISQLLSATLTD---EVFKIGDVEISQVTIVGIIRHAEKAPTNIVYKIDDMTA 95
Query: 864 K-IDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHF 688
+DV +W + + E E YV V G L+ FQ K+ +VA+ + + + NE T H
Sbjct: 96 APMDVRQWVDTDDTSGENTVVPPETYVKVAGHLRSFQNKKSLVAFKIIPLEDMNEFTAHI 155
Query: 687 LHCIQVHMELPGLKQIYSSAATYGGVAHAPSQPNP---VDGNYISNLVL----------S 547
L + H+ L S A + V PS NP GN+ N +
Sbjct: 156 LEVVNSHLML-------SKANSQASVGR-PSMSNPGMGEPGNFSGNNFMPANGLTVVQNQ 207
Query: 546 VFHDPSVMDQEHGLHIKDVIDRLK-LPDDVVSAAIQGHVDVGNIYNTIDDFHYKS 385
V + + GL+ +D+ +L+ +P + A+ + G+IY+T+DD H+KS
Sbjct: 208 VLNLIKACPRPEGLNFQDLRSQLQHMPVASIKQAVDFLCNEGHIYSTVDDDHFKS 262
>sptrnew|EAA32731|EAA32731 Hypothetical protein.
Length = 284
Score = 78.2 bits (191), Expect = 2e-13
Identities = 43/131 (32%), Positives = 75/131 (57%), Gaps = 5/131 (3%)
Frame = -2
Query: 1041 QTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGTGK 862
++L P+T+KQ +D +T + AI+G V+ + +VG++ + T++ + +DDGTG
Sbjct: 34 ESLRPVTIKQLLDWEETFPG-AELAIDGHPVTQVTIVGQVRSVKPQPTNITYRIDDGTGA 92
Query: 861 IDVNRW-ENEASDAKEMADANN----ENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEIT 697
IDV +W ++EA ++ + +V V G LK GK+HV A +R++ +FNE+
Sbjct: 93 IDVKKWVDSEAQGGEDGGSGAGTIAPDAFVRVWGRLKSLGGKKHVSANFIRQIEDFNEVN 152
Query: 696 CHFLHCIQVHM 664
H L VH+
Sbjct: 153 YHLLEATYVHL 163
>sw|P26754|RFA2_YEAST Replication factor-A protein 2 (RF-A) (DNA
binding protein BUF1) (Replication protein A 36 kDa
subunit).
Length = 273
Score = 73.6 bits (179), Expect = 6e-12
Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 18/160 (11%)
Frame = -2
Query: 1038 TLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGTGKI 859
TL P+T+KQ +++ Q D F + E+ + VG + + ++ T++DGTG+I
Sbjct: 38 TLTPVTIKQILESKQDIQD-GPFVSHNQELHHVCFVGVVRNITDHTANIFLTIEDGTGQI 96
Query: 858 DVNRWENEASDAKEMADANNEN-----------------YVIVIGGLKGFQGKRHVVAYA 730
+V +W +A+D +A N+++ YV V G LK F GK+++
Sbjct: 97 EVRKWSEDAND---LAAGNDDSSGKGYGSQVAQQFEIGGYVKVFGALKEFGGKKNIQYAV 153
Query: 729 VRRVTNFNEITCHFLHCIQVHMELPG-LKQIYSSAATYGG 613
++ + +FNE+ H L I+ H G +KQ SA+ G
Sbjct: 154 IKPIDSFNEVLTHHLEVIKCHSIASGMMKQPLESASNNNG 193
>sptr|Q8SRS2|Q8SRS2 Replication factor A protein 2 (32KDA subunit).
Length = 274
Score = 72.8 bits (177), Expect = 1e-11
Identities = 41/128 (32%), Positives = 68/128 (53%), Gaps = 2/128 (1%)
Frame = -2
Query: 1041 QTLLPLTVKQ--TMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGT 868
+TL LT+KQ + D +TS S ++ EV+ ++++G ++ T +F L+DGT
Sbjct: 69 KTLRALTIKQIGSCDFDETS---STHLVDSAEVTNVQIIGWVVSSKTSATGSMFVLEDGT 125
Query: 867 GKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHF 688
G +D W + + ++ +N + V G L+ F GKR V A + V + N +T HF
Sbjct: 126 GSVDCTFWPGNSYEEEQCKVLEEQNLLKVNGSLRTFNGKRSVSASHLSAVEDSNFVTYHF 185
Query: 687 LHCIQVHM 664
L CI H+
Sbjct: 186 LSCIYQHL 193
>sptr|Q9DDG4|Q9DDG4 Replication protein A.
Length = 272
Score = 68.9 bits (167), Expect = 1e-10
Identities = 41/137 (29%), Positives = 72/137 (52%), Gaps = 2/137 (1%)
Frame = -2
Query: 1065 GLSKGRS-AQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVV 889
G KGR+ AQ ++P TV Q + A Q F + VE++ + +VG + + ++
Sbjct: 31 GDKKGRTRAQQIVPCTVSQLLSAVQAE---DVFKVGEVEIAQVTIVGVIRSTDKSTINIQ 87
Query: 888 FTLDDGTGK-IDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTN 712
+ +DD T +DV +W + + + +YV V G L+ FQ R +VA++VR + +
Sbjct: 88 YKVDDMTAAPMDVKQWIDTEDMGVDNSVIPPGSYVKVSGNLRSFQNNRSLVAFSVRVLED 147
Query: 711 FNEITCHFLHCIQVHME 661
NE+T H L + H++
Sbjct: 148 MNEVTSHMLEVVNAHLQ 164
>sw|Q13156|RFA4_HUMAN Replication protein A 30 kDa subunit (RP-A)
(RF-A) (Replication factor-A protein 4).
Length = 261
Score = 60.5 bits (145), Expect = 5e-08
Identities = 57/227 (25%), Positives = 97/227 (42%), Gaps = 8/227 (3%)
Frame = -2
Query: 1041 QTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGTGK 862
Q ++P V Q + + F + G+ VS + +VG + G + + + +DD T K
Sbjct: 44 QDVVPCNVNQLLSSTVFD---PVFKVRGIIVSQVSIVGVIRGAEKASNHICYKIDDMTAK 100
Query: 861 -IDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHFL 685
I+ +W K++ + YV V G LK G + + + + + NE T H L
Sbjct: 101 PIEARQWFGREK-VKQVTPLSVGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHIL 159
Query: 684 HCIQVHMELPGLKQIYSSAATYGGVAHAPSQPNPVDG------NYISNLVLSVFHDPSVM 523
+ HM L ++ T V +PS+ N N+I + VL + H+
Sbjct: 160 ETVNAHMMLDKARR----DTTVESVPVSPSEVNDAGDNDESHRNFIQDEVLRLIHE---C 212
Query: 522 DQEHGLHIKDVIDRL-KLPDDVVSAAIQGHVDVGNIYNTIDDFHYKS 385
+ G I ++ +L L + AI G+IY T+D H+KS
Sbjct: 213 PHQEGKSIHELRAQLCDLSVKAIKEAIDYLTVEGHIYPTVDREHFKS 259
>sptr|Q9VIH1|Q9VIH1 CG9273 protein (GM04951p).
Length = 246
Score = 57.8 bits (138), Expect = 3e-07
Identities = 48/233 (20%), Positives = 102/233 (43%), Gaps = 7/233 (3%)
Frame = -2
Query: 1068 SGLSKGRSAQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVV 889
+G + + + ++PL VKQ +DA + N + G++ + +V + T +
Sbjct: 16 TGAASNQKGEGIVPLVVKQIVDAPE-----GNIELFGMQYAMACVVAIVRNVETSSTKIT 70
Query: 888 FTLDDGTGKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNF 709
+TL+D +G+ID + W E DA + + NYV V G + G + ++ + + V +
Sbjct: 71 YTLEDHSGRIDAHYWLEE-GDALKAPEVMVNNYVKVYGTTRSQGGSKTLMIFKLLPVLDP 129
Query: 708 NEITCHFLHCIQV------HMELPGLKQIYSSAATYGGVAHAPSQPNPVDGNYISNLVLS 547
NE+ H L + + G +++ G +A + + + + +
Sbjct: 130 NEVCTHLLEVLNARYRAEDYQSKGGAGAGAGASSGSGSIADFTASQSSAIVSGLEPKQQA 189
Query: 546 VFHDPSVMDQEHGLHIKDVIDRLK-LPDDVVSAAIQGHVDVGNIYNTIDDFHY 391
VF E G+ K++ + + D ++ + + G+IY++ID H+
Sbjct: 190 VFQAIKSNVSEEGISRKELKAKFSHISDSELTNILDFMISEGHIYSSIDADHF 242
>sptr|Q8SXG3|Q8SXG3 RH07841p.
Length = 246
Score = 57.0 bits (136), Expect = 6e-07
Identities = 47/233 (20%), Positives = 101/233 (43%), Gaps = 7/233 (3%)
Frame = -2
Query: 1068 SGLSKGRSAQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVV 889
+G + + + ++PL VKQ +DA + N + G++ + +V + T +
Sbjct: 16 TGAASNQKGEGIVPLVVKQIVDAPE-----GNIELFGMQYAMACVVAIVRNVETSSTKIT 70
Query: 888 FTLDDGTGKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNF 709
+TL+D +G+ID + W E DA + + NYV V G + G + ++ + + + +
Sbjct: 71 YTLEDHSGRIDAHYWLEE-GDALKAPEVMVNNYVKVYGTTRSQGGSKTLMIFKLLPILDP 129
Query: 708 NEITCHFLHCIQVHMELP------GLKQIYSSAATYGGVAHAPSQPNPVDGNYISNLVLS 547
NE+ H L + G +++ G +A + + + + +
Sbjct: 130 NEVCTHLLEVLNARYRAEDCQSKGGAGAGAGASSGSGSIADFTASQSSAIVSGLEPKQQA 189
Query: 546 VFHDPSVMDQEHGLHIKDVIDRLK-LPDDVVSAAIQGHVDVGNIYNTIDDFHY 391
VF E G+ K++ + + D ++ + + G+IY++ID H+
Sbjct: 190 VFQAIKSNVSEEGISRKELKAKFSHISDSELTNILDFMISEGHIYSSIDADHF 242
>sptrnew|EAA43853|EAA43853 ENSANGP00000023457 (Fragment).
Length = 254
Score = 49.7 bits (117), Expect = 9e-05
Identities = 29/130 (22%), Positives = 61/130 (46%)
Frame = -2
Query: 1065 GLSKGRSAQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVF 886
G A+ +LPL ++Q ++++ ++ G + + I LV + T V +
Sbjct: 25 GAGNENKAEGVLPLVIEQVLESSD-----GGISLFGHQYAMITLVAIIRNVDYSSTKVTY 79
Query: 885 TLDDGTGKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFN 706
L+D TG+ID + W E ++Y V+G ++ G + ++ + + ++ + N
Sbjct: 80 QLEDHTGRIDAHLWI-EDDGVTSTPSIVPQSYARVVGSVRNQGGSKSIMIFKIDQINSPN 138
Query: 705 EITCHFLHCI 676
E+T H L +
Sbjct: 139 EVTTHLLEVL 148
>sptrnew|EAA12428|EAA12428 ENSANGP00000018307.
Length = 247
Score = 49.7 bits (117), Expect = 9e-05
Identities = 29/130 (22%), Positives = 61/130 (46%)
Frame = -2
Query: 1065 GLSKGRSAQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVF 886
G A+ +LPL ++Q ++++ ++ G + + I LV + T V +
Sbjct: 18 GAGNENKAEGVLPLVIEQVLESSD-----GGISLFGHQYAMITLVAIIRNVDYSSTKVTY 72
Query: 885 TLDDGTGKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFN 706
L+D TG+ID + W E ++Y V+G ++ G + ++ + + ++ + N
Sbjct: 73 QLEDHTGRIDAHLWI-EDDGVTSTPSIVPQSYARVVGSVRNQGGSKSIMIFKIDQINSPN 131
Query: 705 EITCHFLHCI 676
E+T H L +
Sbjct: 132 EVTTHLLEVL 141
>sw|Q23697|RFA2_CRIFA Replication protein A 28 kDa subunit (RP-A)
(RF-A) (Replication factor-A protein 2).
Length = 258
Score = 40.4 bits (93), Expect = 0.056
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 11/155 (7%)
Frame = -2
Query: 1089 STVVPENSGLSKGRSAQ-TLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGK 913
S N G + + Q + PLT+KQ ++A G ++G EV+ +VGR++G
Sbjct: 11 SAAASSNGGQQQQQRRQHPIRPLTIKQMLEAQSVGG--GVMVVDGREVTQATVVGRVVGY 68
Query: 912 VE----------RVTDVVFTLDDGTGKIDVNRWENEASDAKEMADANNENYVIVIGGLKG 763
+ + D TG I V +W +A A+E N +V G +
Sbjct: 69 ENANMASGGGAITAKHFGYRITDNTGMIVVRQW-IDADRAQEPIPLN--THVRASGTVNV 125
Query: 762 FQGKRHVVAYAVRRVTNFNEITCHFLHCIQVHMEL 658
+Q + +V V + + NE+ H L I H+ L
Sbjct: 126 WQ-QSPIVTGTVVSMADSNEMNYHMLDAILTHLRL 159
>sptrnew|EAA19570|EAA19570 Hypothetical protein.
Length = 273
Score = 38.5 bits (88), Expect = 0.21
Identities = 29/137 (21%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Frame = -2
Query: 1029 PLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGTGKIDVN 850
P+T+K ++ + NF I+ ++S I + G++ E + ++F + D TG I+
Sbjct: 56 PVTIKLLLNKMMNN---ENFEIHNFQISGIIIFGKITNVKELASAIIFEICDYTGTIEA- 111
Query: 849 RWENEASDAKEMADANN---ENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHFLH- 682
++ +A + K N ++V ++GG+ + K V ++ + ++ +F +
Sbjct: 112 KYNKDAKNDKIKNHIENLKVNDHVKIVGGVYSPESKTEQVQISISYINKMDDWVSYFSYF 171
Query: 681 ---CIQVHMELPGLKQI 640
I +++L LK I
Sbjct: 172 TSEIIYCYLKLLKLKNI 188
>sptr|Q81Z00|Q81Z00 Prophage LambdaBa04, tape measure protein,
putative.
Length = 1311
Score = 34.7 bits (78), Expect = 3.1
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 14/130 (10%)
Frame = -2
Query: 1074 ENSGLSKGRSAQTLLPLTVKQTMDAAQTSGDRSNFAI-NGVEVS-----TIRLVGR-MLG 916
+ S R +TL T K D A G+R AI NG S I +VGR LG
Sbjct: 124 QEKAASSTRQLETLFSATGKSVDDFADALGNRLVNAIKNGTASSRQLEQAIEIVGREALG 183
Query: 915 K---VERVTDVVFTLDDGTG----KIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQ 757
+ ++ + ++DDG + D+N+ EA +A E V+GG+
Sbjct: 184 AEADIGKLQQALRSVDDGNSIQNIRNDLNQLSQEAEEASESVKGLGVELENVLGGIVAGG 243
Query: 756 GKRHVVAYAV 727
G + V+ A+
Sbjct: 244 GIQEVIGQAL 253
>sptr|Q8ENK3|Q8ENK3 Phosphoglycolate phosphatase.
Length = 214
Score = 34.3 bits (77), Expect = 4.0
Identities = 23/101 (22%), Positives = 41/101 (40%)
Frame = -2
Query: 882 LDDGTGKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNE 703
L D KID + + + +E ++N+V F + R +
Sbjct: 49 LVDTFNKIDETKADRMITTFREHNIREHDNFVTA------FPHVYDTLEELQNRNISLGI 102
Query: 702 ITCHFLHCIQVHMELPGLKQIYSSAATYGGVAHAPSQPNPV 580
++ H + + +EL G+ + +S+ TY V HA P PV
Sbjct: 103 VSTKMRHTVHMGLELTGISKFFSTIITYDDVTHAKPHPEPV 143
>sptr|Q9AAZ1|Q9AAZ1 Metallo-beta-lactamase family protein.
Length = 280
Score = 34.3 bits (77), Expect = 4.0
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Frame = -2
Query: 1005 DAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVE-RVTDVVFTLD------DGTGKIDV 853
D + + D F + G+E++ I L GR+ G V R+ D+VFT D +G+G+ D+
Sbjct: 118 DFDKLAQDGDTFPMGGLEITPIALTGRLPGAVAYRMADMVFTGDLVLAPAEGSGRCDI 175
>sptr|Q8W200|Q8W200 Waxy (Fragment).
Length = 152
Score = 33.5 bits (75), Expect = 6.9
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = -1
Query: 742 SCLCCAACDKLQ*NNLSLSALHSGAYGAPRVKADLFFSCNIWRSSPCPITAKS 584
S LC AA + + NL+ S SG+YG D+ F N W ++P P KS
Sbjct: 71 SLLCQAALEAPRVLNLNCSKYFSGSYG-----EDVLFIANDWHTAPIPCYLKS 118
Database: /db/trembl-ebi/tmp/swall
Posted date: Sep 26, 2003 8:29 PM
Number of letters in database: 406,886,216
Number of sequences in database: 1,272,877
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 845,858,027
Number of Sequences: 1272877
Number of extensions: 17315825
Number of successful extensions: 38586
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 36808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38525
length of database: 406,886,216
effective HSP length: 125
effective length of database: 247,776,591
effective search space used: 75324083664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)