BLASTX 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.1
(608 letters)
Database: /db/trembl-ebi/tmp/swall
1,272,877 sequences; 406,886,216 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sptr|Q8LFJ6|Q8LFJ6 RNA polymerase II subunit (hsRPB10), putative... 137 1e-31
sw|Q39290|RPBX_BRANA DNA-directed RNA polymerase II 8.2 kDa poly... 136 2e-31
sw|Q9SYA6|RPBX_ARATH DNA-directed RNA polymerase II 8.2 kDa poly... 133 1e-30
sptrnew|AAP92539|AAP92539 Ab1-108. 119 3e-26
sptrnew|EAA00426|EAA00426 AgCP9910 (Fragment). 119 3e-26
sw|P52436|RPBX_HUMAN DNA-directed RNA polymerase II 7.6 kDa poly... 119 3e-26
sptrnew|AAM51044|AAM51044 SD08670p. 118 5e-26
sw|Q9VC49|RPBX_DROME DNA-directed RNA polymerase II 7.6 kDa poly... 118 5e-26
sptr|Q9GR61|Q9GR61 Hypothetical 7.8 kDa protein. 117 1e-25
sptr|Q8MPD0|Q8MPD0 Putative RNA polymerase subunit. 110 1e-23
sptr|Q86JP7|Q86JP7 Similar to 60S ribosomal protein L32. 110 2e-23
sw|O13877|RPBX_SCHPO DNA-directed RNA polymerases I, II, and III... 109 3e-23
sptr|Q98S56|Q98S56 Putative RNA polymerase II subunit Rpb10. 108 6e-23
sw|P22139|RPBX_YEAST DNA-directed RNA polymerases I, II, and III... 101 6e-21
sptrnew|EAA35772|EAA35772 Hypothetical protein. 94 2e-18
sptrnew|EAA20725|EAA20725 Putative RNA polymerase II subunit Rpb10. 93 3e-18
sptr|Q8IC08|Q8IC08 DNA-directed RNA polymerase 2 8.2 kDa polypep... 92 4e-18
sptr|Q9N9Q1|Q9N9Q1 DNA-directed RNA polymerase II 8.2 kDa polype... 86 4e-16
sptr|Q8SRS6|Q8SRS6 DNA-directed RNA polymerase II 8.2kDa polypep... 82 4e-15
sw|Q8TVB4|RPON_METKA DNA-directed RNA polymerase subunit N (EC 2... 78 7e-14
sptrnew|EAA36688|EAA36688 GLP_474_3411_3043. 77 1e-13
sptr|Q8MUU5|Q8MUU5 RNA polymerase II subunit Rpb10. 77 1e-13
sw|Q96YW4|RPON_SULTO DNA-directed RNA polymerase subunit N (EC 2... 77 1e-13
sw|Q980Z8|RPON_SULSO DNA-directed RNA polymerase subunit N (EC 2... 76 3e-13
sw|O59298|RPON_PYRHO DNA-directed RNA polymerase subunit N (EC 2... 74 1e-12
sw|Q9V194|RPON_PYRAB DNA-directed RNA polymerase subunit N (EC 2... 74 2e-12
sw|P39472|RPON_SULAC DNA-directed RNA polymerase subunit N (EC 2... 68 7e-11
sw|Q8PW43|RPON_METMA DNA-directed RNA polymerase subunit N (EC 2... 67 1e-10
sw|Q8TT41|RPON_METAC DNA-directed RNA polymerase subunit N (EC 2... 67 1e-10
sw|Q9YB47|RPON_AERPE DNA-directed RNA polymerase subunit N (EC 2... 65 5e-10
>sptr|Q8LFJ6|Q8LFJ6 RNA polymerase II subunit (hsRPB10), putative
(Putative RNA polymerase II subunit hsRPB10).
Length = 71
Score = 137 bits (344), Expect = 1e-31
Identities = 63/71 (88%), Positives = 67/71 (94%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60
Query: 327 NYNTLEKTETS 295
NYNTLEK++ S
Sbjct: 61 NYNTLEKSDNS 71
>sw|Q39290|RPBX_BRANA DNA-directed RNA polymerase II 8.2 kDa
polypeptide (EC 2.7.7.6) (RPB10) (RP10) (ABC10).
Length = 71
Score = 136 bits (343), Expect = 2e-31
Identities = 63/71 (88%), Positives = 66/71 (92%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 60
Query: 327 NYNTLEKTETS 295
NYNTLEK++ S
Sbjct: 61 NYNTLEKSDNS 71
>sw|Q9SYA6|RPBX_ARATH DNA-directed RNA polymerase II 8.2 kDa
polypeptide (EC 2.7.7.6) (RPB10) (RP10) (ABC10).
Length = 71
Score = 133 bits (335), Expect = 1e-30
Identities = 60/69 (86%), Positives = 66/69 (95%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 327 NYNTLEKTE 301
NYNT+EK++
Sbjct: 61 NYNTMEKSD 69
>sptrnew|AAP92539|AAP92539 Ab1-108.
Length = 323
Score = 119 bits (298), Expect = 3e-26
Identities = 54/67 (80%), Positives = 60/67 (89%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 257 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 316
Query: 327 NYNTLEK 307
NY LEK
Sbjct: 317 NYAPLEK 323
>sptrnew|EAA00426|EAA00426 AgCP9910 (Fragment).
Length = 87
Score = 119 bits (298), Expect = 3e-26
Identities = 56/67 (83%), Positives = 60/67 (89%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGKVIGNKW+ YL LLQA+Y+EGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 21 MIIPVRCFTCGKVIGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLL 80
Query: 327 NYNTLEK 307
NY LEK
Sbjct: 81 NYAPLEK 87
>sw|P52436|RPBX_HUMAN DNA-directed RNA polymerase II 7.6 kDa
polypeptide (EC 2.7.7.6) (RPB10) (RPB7.6) (RPABC5).
Length = 67
Score = 119 bits (298), Expect = 3e-26
Identities = 54/67 (80%), Positives = 60/67 (89%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 327 NYNTLEK 307
NY LEK
Sbjct: 61 NYAPLEK 67
>sptrnew|AAM51044|AAM51044 SD08670p.
Length = 67
Score = 118 bits (296), Expect = 5e-26
Identities = 55/67 (82%), Positives = 60/67 (89%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIP+RCFTCGKVIGNKW+ YL LLQA+Y+EGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWESYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLL 60
Query: 327 NYNTLEK 307
NY LEK
Sbjct: 61 NYAPLEK 67
>sw|Q9VC49|RPBX_DROME DNA-directed RNA polymerase II 7.6 kDa
polypeptide (EC 2.7.7.6) (RPB10) (RPB7.6).
Length = 67
Score = 118 bits (296), Expect = 5e-26
Identities = 55/67 (82%), Positives = 60/67 (89%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIP+RCFTCGKVIGNKW+ YL LLQA+Y+EGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWESYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLL 60
Query: 327 NYNTLEK 307
NY LEK
Sbjct: 61 NYAPLEK 67
>sptr|Q9GR61|Q9GR61 Hypothetical 7.8 kDa protein.
Length = 67
Score = 117 bits (293), Expect = 1e-25
Identities = 53/67 (79%), Positives = 60/67 (89%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIP+RCFTCGKVIG+KW+ YL LQ++YSEGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGDKWETYLGFLQSEYSEGDALDALGLRRYCCRRMLLAHVDLIEKLL 60
Query: 327 NYNTLEK 307
NY+ LEK
Sbjct: 61 NYHPLEK 67
>sptr|Q8MPD0|Q8MPD0 Putative RNA polymerase subunit.
Length = 67
Score = 110 bits (276), Expect = 1e-23
Identities = 49/67 (73%), Positives = 59/67 (88%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIP+RCFTCGKV+G+KW+ YL LLQA+Y+E DALD L L RYCCRRM+++HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVVGDKWESYLVLLQAEYTEADALDTLGLRRYCCRRMILSHVDLIEKLL 60
Query: 327 NYNTLEK 307
NY L+K
Sbjct: 61 NYAPLQK 67
>sptr|Q86JP7|Q86JP7 Similar to 60S ribosomal protein L32.
Length = 206
Score = 110 bits (274), Expect = 2e-23
Identities = 51/61 (83%), Positives = 55/61 (90%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGKVIGNKWD YL LLQ DY+EGDAL+AL L +YCCRRML+THVDLIEKL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEGDALNALCLKKYCCRRMLLTHVDLIEKLN 60
Query: 327 N 325
N
Sbjct: 61 N 61
>sw|O13877|RPBX_SCHPO DNA-directed RNA polymerases I, II, and III
8.3 kDa polypeptide (EC 2.7.7.6) (ABC10-beta).
Length = 71
Score = 109 bits (272), Expect = 3e-23
Identities = 50/67 (74%), Positives = 57/67 (85%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIP+RCF+CGKVIG+KWD YL LLQ D +EG+ALD L L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPIRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLL 60
Query: 327 NYNTLEK 307
YN L K
Sbjct: 61 CYNPLSK 67
>sptr|Q98S56|Q98S56 Putative RNA polymerase II subunit Rpb10.
Length = 71
Score = 108 bits (269), Expect = 6e-23
Identities = 48/63 (76%), Positives = 54/63 (85%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGK+IGNKW++YL LL +YSE ALD L L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIIGNKWEIYLRLLNENYSESSALDTLGLQRYCCRRMILTHVDLIEKLL 60
Query: 327 NYN 319
YN
Sbjct: 61 QYN 63
>sw|P22139|RPBX_YEAST DNA-directed RNA polymerases I, II, and III
8.3 kDa polypeptide (EC 2.7.7.6) (ABC10-beta) (ABC8).
Length = 70
Score = 101 bits (252), Expect = 6e-21
Identities = 47/70 (67%), Positives = 56/70 (80%), Gaps = 1/70 (1%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQAD-YSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
MI+PVRCF+CGKV+G+KW+ YL+LLQ D EG AL L L RYCCRRM++THVDLIEK
Sbjct: 1 MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKF 60
Query: 330 LNYNTLEKTE 301
L YN LEK +
Sbjct: 61 LRYNPLEKRD 70
>sptrnew|EAA35772|EAA35772 Hypothetical protein.
Length = 84
Score = 93.6 bits (231), Expect = 2e-18
Identities = 42/63 (66%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQAD-YSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
MIIP+RCF+CGKV+G+ W+ YL L+ + ++GDALD L L RYCCRRM+MTHVDLIEKL
Sbjct: 1 MIIPIRCFSCGKVVGDLWERYLQLIDGEEITDGDALDQLGLKRYCCRRMVMTHVDLIEKL 60
Query: 330 LNY 322
L Y
Sbjct: 61 LKY 63
>sptrnew|EAA20725|EAA20725 Putative RNA polymerase II subunit Rpb10.
Length = 69
Score = 92.8 bits (229), Expect = 3e-18
Identities = 42/67 (62%), Positives = 50/67 (74%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGK+IGN W LY L S+ DALD L L RYCCRRM++TH D+++KLL
Sbjct: 1 MIIPVRCFTCGKLIGNLWSLYEKKLDEGISKCDALDELNLSRYCCRRMMLTHADMMDKLL 60
Query: 327 NYNTLEK 307
YN E+
Sbjct: 61 CYNIYER 67
>sptr|Q8IC08|Q8IC08 DNA-directed RNA polymerase 2 8.2 kDa
polypeptide, putative (EC 2.7.7.6).
Length = 69
Score = 92.4 bits (228), Expect = 4e-18
Identities = 40/67 (59%), Positives = 52/67 (77%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGK+IGN W +Y L+ S+ DAL+ L L+RYCCRRM++TH D+++KLL
Sbjct: 1 MIIPVRCFTCGKLIGNLWSVYEKKLEEGLSKCDALNELNLYRYCCRRMILTHADMMDKLL 60
Query: 327 NYNTLEK 307
YN E+
Sbjct: 61 CYNIYER 67
>sptr|Q9N9Q1|Q9N9Q1 DNA-directed RNA polymerase II 8.2 kDa
polypeptide (Probable DNA- directed RNA polymerase II
8.2 kDa polypeptide).
Length = 89
Score = 85.5 bits (210), Expect = 4e-16
Identities = 38/63 (60%), Positives = 49/63 (77%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCG VI +K+ LYLDL+ SE DA++A L R+CCRRM++THVD+ + LL
Sbjct: 1 MIIPVRCFTCGNVIADKYLLYLDLVSQGVSEEDAMNAFHLERFCCRRMMLTHVDMTDLLL 60
Query: 327 NYN 319
+N
Sbjct: 61 KFN 63
>sptr|Q8SRS6|Q8SRS6 DNA-directed RNA polymerase II 8.2kDa
polypeptide.
Length = 72
Score = 82.4 bits (202), Expect = 4e-15
Identities = 34/66 (51%), Positives = 50/66 (75%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIP+RCFTCGK I +KW+ Y +LL+ D + +ALD L + R CCRRM + HVD+++KLL
Sbjct: 1 MIIPIRCFTCGKEISSKWEPYQELLKIDKGKAEALDELGMRRICCRRMFLGHVDIVDKLL 60
Query: 327 NYNTLE 310
++ ++
Sbjct: 61 KFDIVK 66
>sw|Q8TVB4|RPON_METKA DNA-directed RNA polymerase subunit N (EC
2.7.7.6).
Length = 72
Score = 78.2 bits (191), Expect = 7e-14
Identities = 34/63 (53%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSE-GDALDALELFRYCCRRMLMTHVDLIEKL 331
MIIP+RCFTCG+ I + W+ Y++L++ + E G+ALD L + RYCCRRM ++HVDL+E+
Sbjct: 1 MIIPIRCFTCGRPIAHLWEKYVELIEEEGMEPGEALDELGVDRYCCRRMFLSHVDLLEES 60
Query: 330 LNY 322
L Y
Sbjct: 61 LPY 63
>sptrnew|EAA36688|EAA36688 GLP_474_3411_3043.
Length = 122
Score = 77.4 bits (189), Expect = 1e-13
Identities = 42/71 (59%), Positives = 48/71 (67%), Gaps = 9/71 (12%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGD---------ALDALELFRYCCRRMLMT 355
MIIPVRCFTCGKVIG+ ++ YL LL +E ALD L L RYCCRRML+T
Sbjct: 39 MIIPVRCFTCGKVIGSLYEKYLKLLGEYGAEESGSSETPAKRALDELGLTRYCCRRMLLT 98
Query: 354 HVDLIEKLLNY 322
HVDLI+ LL Y
Sbjct: 99 HVDLIDDLLLY 109
>sptr|Q8MUU5|Q8MUU5 RNA polymerase II subunit Rpb10.
Length = 84
Score = 77.4 bits (189), Expect = 1e-13
Identities = 42/71 (59%), Positives = 48/71 (67%), Gaps = 9/71 (12%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGD---------ALDALELFRYCCRRMLMT 355
MIIPVRCFTCGKVIG+ ++ YL LL +E ALD L L RYCCRRML+T
Sbjct: 1 MIIPVRCFTCGKVIGSLYEKYLKLLGEYGAEESGSSETPAKRALDELGLTRYCCRRMLLT 60
Query: 354 HVDLIEKLLNY 322
HVDLI+ LL Y
Sbjct: 61 HVDLIDDLLLY 71
>sw|Q96YW4|RPON_SULTO DNA-directed RNA polymerase subunit N (EC
2.7.7.6).
Length = 66
Score = 77.4 bits (189), Expect = 1e-13
Identities = 31/62 (50%), Positives = 47/62 (75%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIP+RCFTCG +IG+KW+ ++ + G LD L + RYCCRRML++HVD+I++++
Sbjct: 1 MIIPIRCFTCGSLIGDKWEPFITRVSNGEDPGKVLDDLGVKRYCCRRMLLSHVDIIKEVI 60
Query: 327 NY 322
+Y
Sbjct: 61 HY 62
>sw|Q980Z8|RPON_SULSO DNA-directed RNA polymerase subunit N (EC
2.7.7.6).
Length = 66
Score = 76.3 bits (186), Expect = 3e-13
Identities = 30/62 (48%), Positives = 46/62 (74%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
M+IP+RCFTCG +I +KW ++ + A + G LD L + RYCCRRML++HVD+I +++
Sbjct: 1 MLIPIRCFTCGSLIADKWQSFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHVDIINEVI 60
Query: 327 NY 322
+Y
Sbjct: 61 HY 62
>sw|O59298|RPON_PYRHO DNA-directed RNA polymerase subunit N (EC
2.7.7.6).
Length = 65
Score = 73.9 bits (180), Expect = 1e-12
Identities = 34/62 (54%), Positives = 46/62 (74%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGKVIG+K+ + ++A LD L L RYCCRRML++HV+LI+ ++
Sbjct: 1 MIIPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
Query: 327 NY 322
+Y
Sbjct: 61 HY 62
>sw|Q9V194|RPON_PYRAB DNA-directed RNA polymerase subunit N (EC
2.7.7.6).
Length = 65
Score = 73.6 bits (179), Expect = 2e-12
Identities = 33/62 (53%), Positives = 46/62 (74%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MI+PVRCFTCGKVIG+K+ + ++A LD L L RYCCRRML++HV+LI+ ++
Sbjct: 1 MIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
Query: 327 NY 322
+Y
Sbjct: 61 HY 62
>sw|P39472|RPON_SULAC DNA-directed RNA polymerase subunit N (EC
2.7.7.6).
Length = 66
Score = 68.2 bits (165), Expect = 7e-11
Identities = 27/62 (43%), Positives = 43/62 (69%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIP+RCFTCG V+ +KW+ + + + L L + RYCCRRML++HV++I +++
Sbjct: 1 MIIPIRCFTCGAVVADKWEPFSNRVMGGEDPEKVLTELGVNRYCCRRMLLSHVNIIREII 60
Query: 327 NY 322
+Y
Sbjct: 61 HY 62
>sw|Q8PW43|RPON_METMA DNA-directed RNA polymerase subunit N (EC
2.7.7.6).
Length = 62
Score = 67.4 bits (163), Expect = 1e-10
Identities = 31/61 (50%), Positives = 39/61 (63%)
Frame = -3
Query: 504 IIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLN 325
+IPVRCF+CGKVI N WD Y + LD L + RYCCRRM ++HV+LI+ L
Sbjct: 1 MIPVRCFSCGKVISNYWDEYKRRVTDGEDAAAVLDDLGITRYCCRRMFLSHVELIDVLSP 60
Query: 324 Y 322
Y
Sbjct: 61 Y 61
>sw|Q8TT41|RPON_METAC DNA-directed RNA polymerase subunit N (EC
2.7.7.6).
Length = 62
Score = 67.4 bits (163), Expect = 1e-10
Identities = 30/61 (49%), Positives = 39/61 (63%)
Frame = -3
Query: 504 IIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLN 325
+IPVRCF+CGKVI N WD Y + LD L + RYCCRRM ++HV+L++ L
Sbjct: 1 MIPVRCFSCGKVISNYWDEYKRRVTDGEGSAAVLDDLGITRYCCRRMFLSHVELVDVLSP 60
Query: 324 Y 322
Y
Sbjct: 61 Y 61
>sw|Q9YB47|RPON_AERPE DNA-directed RNA polymerase subunit N (EC
2.7.7.6).
Length = 77
Score = 65.5 bits (158), Expect = 5e-10
Identities = 29/62 (46%), Positives = 40/62 (64%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
M+ PVRCFTCG+ +G+ W + +L+ + + G+ALD L + RYCCRR L T V IE
Sbjct: 1 MLPPVRCFTCGRPLGHLWPRFRELVASGKTPGEALDELGVDRYCCRRTLFTSVTYIEHAA 60
Query: 327 NY 322
Y
Sbjct: 61 KY 62
Database: /db/trembl-ebi/tmp/swall
Posted date: Sep 26, 2003 8:29 PM
Number of letters in database: 406,886,216
Number of sequences in database: 1,272,877
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 375,762,140
Number of Sequences: 1272877
Number of extensions: 6279960
Number of successful extensions: 14671
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14654
length of database: 406,886,216
effective HSP length: 117
effective length of database: 257,959,607
effective search space used: 21926566595
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)