BLASTX 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161284.2.6
(621 letters)
Database: /db/trembl-ebi/tmp/swall
1,272,877 sequences; 406,886,216 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sptrnew|BAC84637|BAC84637 Putative small nuclear ribonucleoprote... 149 3e-35
sptrnew|AAP21306|AAP21306 At2g23930. 148 6e-35
sptrnew|AAM65796|AAM65796 Putative small nuclear ribonucleoprote... 148 6e-35
sptrnew|AAN72046|AAN72046 Putative small nuclear ribonucleoprote... 148 6e-35
sw|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G ... 148 6e-35
sptr|Q9CAX7|Q9CAX7 Putative small nuclear ribonucleoprotein poly... 147 8e-35
sptr|Q94LL5|Q94LL5 Putative small nuclear ribonucleoprotein G. 139 3e-32
sw|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G ... 131 6e-30
sw|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G ... 93 3e-18
sptrnew|EAA19613|EAA19613 Putative small nuclear ribonucleoprote... 92 7e-18
sptrnew|AAH51470|AAH51470 Snrpg protein. 90 2e-17
sptr|Q8IB57|Q8IB57 Small nuclear ribonucleoprotein, putative. 90 2e-17
sw|Q15357|RUXG_HUMAN Small nuclear ribonucleoprotein G (snRNP-G)... 90 2e-17
sptrnew|EAA29411|EAA29411 Hypothetical protein. 85 6e-16
sw|Q9N4G9|RUXG_CAEEL Probable small nuclear ribonucleoprotein G ... 82 7e-15
sptrnew|EAA07689|EAA07689 AgCP1831 (Fragment). 80 1e-14
sw|P40204|RUXG_YEAST Small nuclear ribonucleoprotein G (snRNP-G)... 75 5e-13
sw|O74966|RUXG_SCHPO Probable small nuclear ribonucleoprotein G ... 75 5e-13
sw|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm3. 60 3e-08
sptrnew|EAA34878|EAA34878 Hypothetical protein. 57 1e-07
sw|Q9UK45|LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7. 57 2e-07
sptr|Q9SI54|Q9SI54 Putative snRNP splicing factor (At2g03870). 56 3e-07
sptr|Q9CQQ8|Q9CQQ8 0910001B06Rik protein (RIKEN cDNA 0910001B06 ... 56 4e-07
sptr|Q8I5V6|Q8I5V6 U6 snRNA-associated Sm-like protein, putative. 56 4e-07
sptr|Q40942|Q40942 Small nucleolar ribonucleoprotein E homolog. 55 9e-07
sptr|Q9GYZ6|Q9GYZ6 Sm-G. 54 2e-06
sptr|Q23543|Q23543 ZK593.7 protein. 54 2e-06
sptr|Q9VJI7|Q9VJI7 CG13277 protein (RH73529p). 53 3e-06
sptr|O74499|O74499 Putative snRNP splicing factor, with Sm domain. 53 3e-06
sptr|Q979R0|Q979R0 Small nuclear ribonucleoprotein. 53 3e-06
>sptrnew|BAC84637|BAC84637 Putative small nuclear ribonucleoprotein
E.
Length = 80
Score = 149 bits (376), Expect = 3e-35
Identities = 74/80 (92%), Positives = 77/80 (96%)
Frame = -3
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKLQIK+NANRVVIGTLRGFDQFMNLVVDNTVEVNGN+K DIGMV
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60
Query: 301 VIRGNSVVMIEALEPVARSQ 242
VIRGNSVVMIEALEPV + Q
Sbjct: 61 VIRGNSVVMIEALEPVPKPQ 80
>sptrnew|AAP21306|AAP21306 At2g23930.
Length = 80
Score = 148 bits (373), Expect = 6e-35
Identities = 72/79 (91%), Positives = 76/79 (96%)
Frame = -3
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 60
Query: 301 VIRGNSVVMIEALEPVARS 245
VIRGNS+V +EALEPV RS
Sbjct: 61 VIRGNSIVTVEALEPVGRS 79
>sptrnew|AAM65796|AAM65796 Putative small nuclear ribonucleoprotein
E.
Length = 80
Score = 148 bits (373), Expect = 6e-35
Identities = 72/79 (91%), Positives = 76/79 (96%)
Frame = -3
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 60
Query: 301 VIRGNSVVMIEALEPVARS 245
VIRGNS+V +EALEPV RS
Sbjct: 61 VIRGNSIVTVEALEPVGRS 79
>sptrnew|AAN72046|AAN72046 Putative small nuclear ribonucleoprotein
E.
Length = 80
Score = 148 bits (373), Expect = 6e-35
Identities = 72/79 (91%), Positives = 76/79 (96%)
Frame = -3
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 60
Query: 301 VIRGNSVVMIEALEPVARS 245
VIRGNS+V +EALEPV RS
Sbjct: 61 VIRGNSIVTVEALEPVGRS 79
>sw|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G
(snRNP-G) (Sm protein G) (Sm-G) (SmG).
Length = 80
Score = 148 bits (373), Expect = 6e-35
Identities = 72/79 (91%), Positives = 76/79 (96%)
Frame = -3
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 60
Query: 301 VIRGNSVVMIEALEPVARS 245
VIRGNS+V +EALEPV RS
Sbjct: 61 VIRGNSIVTVEALEPVGRS 79
>sptr|Q9CAX7|Q9CAX7 Putative small nuclear ribonucleoprotein
polypeptide G, 65009-64161.
Length = 79
Score = 147 bits (372), Expect = 8e-35
Identities = 71/79 (89%), Positives = 77/79 (97%)
Frame = -3
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKLQIK+NANR+V+GTLRGFDQFMNLVVDNTVEVNG+DKTDIGMV
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDIGMV 60
Query: 301 VIRGNSVVMIEALEPVARS 245
VIRGNS+V +EALEPV RS
Sbjct: 61 VIRGNSIVTVEALEPVGRS 79
>sptr|Q94LL5|Q94LL5 Putative small nuclear ribonucleoprotein G.
Length = 94
Score = 139 bits (350), Expect = 3e-32
Identities = 73/94 (77%), Positives = 77/94 (81%), Gaps = 14/94 (14%)
Frame = -3
Query: 481 MSRSGQPPDLKKYMDKKLQ--------------IKMNANRVVIGTLRGFDQFMNLVVDNT 344
MSRSGQPPDLKKYMDKKLQ +K+NANRVVIGTLRGFDQFMNLVVDNT
Sbjct: 1 MSRSGQPPDLKKYMDKKLQTLMVYSFTLFSILPVKLNANRVVIGTLRGFDQFMNLVVDNT 60
Query: 343 VEVNGNDKTDIGMVVIRGNSVVMIEALEPVARSQ 242
VEVNGN+K DIGMVVIRGNSVVMIEALEPV + Q
Sbjct: 61 VEVNGNEKNDIGMVVIRGNSVVMIEALEPVPKPQ 94
>sw|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G
(snRNP-G) (Sm protein G) (Sm-G) (SmG).
Length = 81
Score = 131 bits (330), Expect = 6e-30
Identities = 63/76 (82%), Positives = 70/76 (92%)
Frame = -3
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MS SGQPP LKKYMDK+LQI + ANR+++GTLRGFDQFMNLVVDNTVEVNGN+K DIGMV
Sbjct: 1 MSTSGQPPALKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60
Query: 301 VIRGNSVVMIEALEPV 254
VIRGNSVV +EALEPV
Sbjct: 61 VIRGNSVVTVEALEPV 76
>sw|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G
(snRNP-G) (Sm protein G) (Sm-G) (SmG).
Length = 76
Score = 92.8 bits (229), Expect = 3e-18
Identities = 44/71 (61%), Positives = 57/71 (80%), Gaps = 1/71 (1%)
Frame = -3
Query: 463 PPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTV-EVNGNDKTDIGMVVIRGN 287
PP++KKYMDK++ +K+N R V G LRGFD FMN+V+D+TV E N K +IGMVVIRGN
Sbjct: 6 PPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGN 65
Query: 286 SVVMIEALEPV 254
S+VM+EAL+ V
Sbjct: 66 SIVMVEALDRV 76
>sptrnew|EAA19613|EAA19613 Putative small nuclear ribonucleoprotein
polypeptide G.
Length = 83
Score = 91.7 bits (226), Expect = 7e-18
Identities = 40/80 (50%), Positives = 62/80 (77%)
Frame = -3
Query: 493 VAVTMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTD 314
+A+T+ ++G D +K+M+K+LQI +N NR+++G LRG+D FMNLV+DNTVE+ ++ +
Sbjct: 1 MALTVGKAGPASDFRKFMEKRLQIYLNGNRLIVGVLRGYDTFMNLVLDNTVEIKKDENIE 60
Query: 313 IGMVVIRGNSVVMIEALEPV 254
IG+VVIRGNS+ E L+ V
Sbjct: 61 IGIVVIRGNSISYWECLDKV 80
>sptrnew|AAH51470|AAH51470 Snrpg protein.
Length = 76
Score = 89.7 bits (221), Expect = 2e-17
Identities = 44/71 (61%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Frame = -3
Query: 463 PPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV-NGNDKTDIGMVVIRGN 287
PP+LKK+MDKKL +K+N R V G LRGFD FMNLV+D VE+ + +IGMVVIRGN
Sbjct: 6 PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGN 65
Query: 286 SVVMIEALEPV 254
S++M+EALE V
Sbjct: 66 SIIMLEALERV 76
>sptr|Q8IB57|Q8IB57 Small nuclear ribonucleoprotein, putative.
Length = 83
Score = 89.7 bits (221), Expect = 2e-17
Identities = 40/80 (50%), Positives = 61/80 (76%)
Frame = -3
Query: 493 VAVTMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTD 314
+ +T+ ++G D +K+M+K+LQI +N NR V+G LRG+D FMNLV+DNT+E+ +++ D
Sbjct: 1 MTLTVGKAGPASDFRKFMEKRLQIYLNGNRQVVGILRGYDTFMNLVLDNTMEIKKDEQID 60
Query: 313 IGMVVIRGNSVVMIEALEPV 254
IG+VVIRGNS+ E L+ V
Sbjct: 61 IGVVVIRGNSISYWECLDKV 80
>sw|Q15357|RUXG_HUMAN Small nuclear ribonucleoprotein G (snRNP-G)
(Sm protein G) (Sm-G) (SmG).
Length = 76
Score = 89.7 bits (221), Expect = 2e-17
Identities = 44/71 (61%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Frame = -3
Query: 463 PPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV-NGNDKTDIGMVVIRGN 287
PP+LKK+MDKKL +K+N R V G LRGFD FMNLV+D VE+ + +IGMVVIRGN
Sbjct: 6 PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGN 65
Query: 286 SVVMIEALEPV 254
S++M+EALE V
Sbjct: 66 SIIMLEALERV 76
>sptrnew|EAA29411|EAA29411 Hypothetical protein.
Length = 85
Score = 85.1 bits (209), Expect = 6e-16
Identities = 40/70 (57%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
Frame = -3
Query: 460 PDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTV-EVNGNDKTDIGMVVIRGNS 284
P+LKKY+DK+L +++N +R VIG LRG+D F+N+V+D+ V E +G +K +GMV IRGNS
Sbjct: 6 PELKKYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDDAVEEKDGGEKVKLGMVTIRGNS 65
Query: 283 VVMIEALEPV 254
VVM+EALE +
Sbjct: 66 VVMMEALERI 75
>sw|Q9N4G9|RUXG_CAEEL Probable small nuclear ribonucleoprotein G
(snRNP-G) (Sm protein G) (Sm-G) (SmG).
Length = 77
Score = 81.6 bits (200), Expect = 7e-15
Identities = 39/72 (54%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Frame = -3
Query: 463 PPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV-NGNDKTDIGMVVIRGN 287
PP+LKKYMDK++ +K+N NR V G LRGFD FMN+V+D VE ++GM VIRGN
Sbjct: 6 PPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMTVIRGN 65
Query: 286 SVVMIEALEPVA 251
SVV++E E ++
Sbjct: 66 SVVIMEPKERIS 77
>sptrnew|EAA07689|EAA07689 AgCP1831 (Fragment).
Length = 77
Score = 80.5 bits (197), Expect = 1e-14
Identities = 37/68 (54%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTV-EVNGNDKTDIGMVVIRGNSVV 278
+++YMDK+L +K+N RVV G LRGFD FMN+VVD ++ E + +IGMVVIRGNS++
Sbjct: 10 VQRYMDKRLSLKLNGGRVVSGILRGFDPFMNVVVDESIEECKDGTRNNIGMVVIRGNSII 69
Query: 277 MIEALEPV 254
M+EAL+ +
Sbjct: 70 MVEALDRI 77
>sw|P40204|RUXG_YEAST Small nuclear ribonucleoprotein G (snRNP-G)
(Sm protein G) (Sm-G) (SmG).
Length = 77
Score = 75.5 bits (184), Expect = 5e-13
Identities = 35/73 (47%), Positives = 55/73 (75%), Gaps = 4/73 (5%)
Frame = -3
Query: 460 PDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTD---IGM-VVIR 293
P+LKKYMDKK+ + +N +R V G LRG+D F+N+V+D+ +E+NG D + +G+ VIR
Sbjct: 5 PELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEINGEDPANNHQLGLQTVIR 64
Query: 292 GNSVVMIEALEPV 254
GNS++ +EAL+ +
Sbjct: 65 GNSIISLEALDAI 77
>sw|O74966|RUXG_SCHPO Probable small nuclear ribonucleoprotein G
(snRNP-G) (Sm protein G) (Sm-G) (SmG).
Length = 77
Score = 75.5 bits (184), Expect = 5e-13
Identities = 38/76 (50%), Positives = 60/76 (78%), Gaps = 2/76 (2%)
Frame = -3
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDIG 308
MS++G P DLKKY+D+++ +++N +R V G LRG+D F+N+V+++++E V+G +K IG
Sbjct: 1 MSKAGAP-DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDG-EKVKIG 58
Query: 307 MVVIRGNSVVMIEALE 260
V IRGNSV+MIE L+
Sbjct: 59 SVAIRGNSVIMIETLD 74
>sw|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm3.
Length = 107
Score = 59.7 bits (143), Expect = 3e-08
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 12/78 (15%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTD------------ 314
DL KY D K+++K+ ++VIG L+G+DQ MNLV+D+TVE N +
Sbjct: 21 DLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARK 80
Query: 313 IGMVVIRGNSVVMIEALE 260
+G+ VIRG +V + + E
Sbjct: 81 LGLTVIRGTILVSLSSAE 98
>sptrnew|EAA34878|EAA34878 Hypothetical protein.
Length = 132
Score = 57.4 bits (137), Expect = 1e-07
Identities = 29/66 (43%), Positives = 42/66 (63%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVV 278
DLKKYMD+++ +K N R V GTL+G+D MNLV+D+ E G+VV RG +V
Sbjct: 57 DLKKYMDQRITVKFNGGREVTGTLKGYDALMNLVLDDVQEAVR------GLVVARGTLLV 110
Query: 277 MIEALE 260
+I ++
Sbjct: 111 VISPVD 116
>sw|Q9UK45|LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7.
Length = 103
Score = 56.6 bits (135), Expect = 2e-07
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGN---------DKTDIGM 305
DL KY+DK +++K R G L+GFD +NLV+D T+E + D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 304 VVIRGNSVVMI 272
VV RG SVV+I
Sbjct: 74 VVCRGTSVVLI 84
>sptr|Q9SI54|Q9SI54 Putative snRNP splicing factor (At2g03870).
Length = 99
Score = 56.2 bits (134), Expect = 3e-07
Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 9/71 (12%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--------VNGNDKT-DIGM 305
DL K++DK +Q+K+ R V GTL+G+DQ +NLV+D VE + D+T +G+
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGL 69
Query: 304 VVIRGNSVVMI 272
+V RG +V+++
Sbjct: 70 IVCRGTAVMLV 80
>sptr|Q9CQQ8|Q9CQQ8 0910001B06Rik protein (RIKEN cDNA 0910001B06
gene).
Length = 103
Score = 55.8 bits (133), Expect = 4e-07
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGN---------DKTDIGM 305
DL KY+DK +++K R G L+GFD +NLV+D T+E + D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTEDTRQLGL 73
Query: 304 VVIRGNSVVMI 272
VV RG SVV+I
Sbjct: 74 VVCRGTSVVLI 84
>sptr|Q8I5V6|Q8I5V6 U6 snRNA-associated Sm-like protein, putative.
Length = 108
Score = 55.8 bits (133), Expect = 4e-07
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 9/75 (12%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGN--------DKT-DIGM 305
D+KK+M++K+++K + R V+GTL G D NLV+D T E + DKT IG+
Sbjct: 20 DIKKFMNQKIRVKFDGGREVVGTLIGHDAIFNLVLDKTEEYIRDPNDSFVVTDKTRSIGL 79
Query: 304 VVIRGNSVVMIEALE 260
+V RG SV +I +E
Sbjct: 80 IVARGTSVALITPVE 94
>sptr|Q40942|Q40942 Small nucleolar ribonucleoprotein E homolog.
Length = 71
Score = 54.7 bits (130), Expect = 9e-07
Identities = 25/66 (37%), Positives = 46/66 (69%)
Frame = -3
Query: 460 PDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSV 281
PDLK +M++++QI++ + GTLRGFDQF+N+V++ + ++ DI +++RGNS+
Sbjct: 8 PDLKLFMEEEIQIQLKNKLCLKGTLRGFDQFLNIVLEKSSYSKESNYFDI--LIVRGNSI 65
Query: 280 VMIEAL 263
+ + L
Sbjct: 66 MSVSKL 71
>sptr|Q9GYZ6|Q9GYZ6 Sm-G.
Length = 82
Score = 53.5 bits (127), Expect = 2e-06
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 7/73 (9%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-------VNGNDKTDIGMVV 299
+L +M+K++++K+ + R + G LRG D+FM++V+ + V+ V DKT +G V
Sbjct: 9 NLNHFMEKRVKVKLTSGRSISGELRGVDEFMSIVLYDAVDETPTSGTVENEDKTSLGTAV 68
Query: 298 IRGNSVVMIEALE 260
+RG +V I LE
Sbjct: 69 VRGAMIVDIVGLE 81
>sptr|Q23543|Q23543 ZK593.7 protein.
Length = 104
Score = 53.5 bits (127), Expect = 2e-06
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 12/81 (14%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE---------VNGNDKTDIGM 305
DL +++DK++++K R G LRGFDQ +N+V+D+ E V G++ +G+
Sbjct: 15 DLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGL 74
Query: 304 VVIRGNSVVMI---EALEPVA 251
+V RG ++ ++ + LE +A
Sbjct: 75 IVARGTAITVVSPADGLEQIA 95
>sptr|Q9VJI7|Q9VJI7 CG13277 protein (RH73529p).
Length = 110
Score = 53.1 bits (126), Expect = 3e-06
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 10/72 (13%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE----------VNGNDKTDIG 308
DL KY++K++++K R G L+G+D +NLV+DNTVE + +G
Sbjct: 23 DLSKYLEKQIRVKFAGGREASGILKGYDALLNLVLDNTVEYLRDSDEPYKLTEEQTRSLG 82
Query: 307 MVVIRGNSVVMI 272
+VV RG ++V+I
Sbjct: 83 LVVCRGTALVLI 94
>sptr|O74499|O74499 Putative snRNP splicing factor, with Sm domain.
Length = 113
Score = 53.1 bits (126), Expect = 3e-06
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDK--------TDIGMV 302
DL +Y D+++Q R + G L+GFDQ MNLV+D+ E N + +G+V
Sbjct: 27 DLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLV 86
Query: 301 VIRGNSVVMIEALE 260
V+RG ++V+I ++
Sbjct: 87 VVRGTTLVLIAPMD 100
>sptr|Q979R0|Q979R0 Small nuclear ribonucleoprotein.
Length = 71
Score = 53.1 bits (126), Expect = 3e-06
Identities = 25/61 (40%), Positives = 43/61 (70%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVM 275
L++ ++K++ + + NRV+ GTL G+D +MN+V+D+ E + N +G VVIRG++VV
Sbjct: 8 LEESVNKRVSLLLKDNRVLEGTLTGYDDYMNMVLDDVDENSENVSRKLGTVVIRGSNVVR 67
Query: 274 I 272
I
Sbjct: 68 I 68
Database: /db/trembl-ebi/tmp/swall
Posted date: Sep 26, 2003 8:29 PM
Number of letters in database: 406,886,216
Number of sequences in database: 1,272,877
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,146,799
Number of Sequences: 1272877
Number of extensions: 8464783
Number of successful extensions: 18780
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18709
length of database: 406,886,216
effective HSP length: 117
effective length of database: 257,959,607
effective search space used: 22958405023
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)