blastx1716352.2.1.n.xseq.html

BLASTX 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1716352.2.1
         (990 letters)

Database: /db/trembl-ebi/tmp/swall 
           1,165,242 sequences; 374,381,506 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

   sptr|O24188|O24188 OsGRP2 (Putative glycine-rich RNA-binding pro...   179  5e-44
   sptr|O23793|O23793 RNA binding protein.                               144  2e-33
   sptrnew|AAN72208|AAN72208 Glycine-rich RNA-binding protein AtGRP...   143  3e-33
   sw|Q9SVM8|GRP2_ARATH Glycine-rich RNA-binding protein 2, mitocho...   143  3e-33
   sptr|Q40437|Q40437 RGP-3 (Fragment).                                  140  2e-32
   sptr|Q9LIS2|Q9LIS2 Glycine-rich RNA binding protein-like (AT3g23...   138  1e-31
   sptr|Q8LDS0|Q8LDS0 Glycine-rich RNA binding protein, putative.        138  1e-31
   sptr|P93486|P93486 Glycine-rich RNA-binding protein PsGRBP.           131  1e-29
   sptr|Q9FNR1|Q9FNR1 Similarity to RNA binding protein (AT5g61030/...   119  8e-26
   sptr|Q40436|Q40436 RNA-binding glycine rich protein (RGP-2).          117  3e-25
   sptr|Q941H9|Q941H9 RNA-binding protein precursor.                     115  7e-25
   sptr|Q8LPB0|Q8LPB0 Glycine-rich RNA-binding protein.                  114  2e-24
   sptr|Q941H8|Q941H8 RNA-binding protein precursor.                     113  3e-24
   sptr|Q8S652|Q8S652 Putative RNA-binding protein.                      105  7e-22
   sw|P39697|RT19_ARATH 40S ribosomal protein S19, mitochondrial pr...   103  3e-21
   sptr|O24187|O24187 OsGRP1.                                            102  1e-20
   sptr|Q39209|Q39209 RNA binding protein (Fragment).                    101  1e-20
   sptr|Q94EH5|Q94EH5 AT4g24770/F22K18_30.                               101  1e-20
   sw|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplast precu...   101  1e-20
   sptr|O22390|O22390 Glycine-rich protein.                              101  2e-20
   sptr|Q9XEL4|Q9XEL4 Glycine-rich RNA-binding protein.                  101  2e-20
   sptr|Q8LPB1|Q8LPB1 Glycine-rich RNA-binding protein.                  100  2e-20
   sptr|Q8VXC4|Q8VXC4 Glycine rich RNA binding protein.                  100  2e-20
   sptr|Q9C909|Q9C909 Putative RNA-binding protein (At1g74230).          100  4e-20
   sw|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplast pre...   100  5e-20
   sptr|Q41834|Q41834 Nucleic acid-binding protein precursor.             99  7e-20
   sptr|Q41518|Q41518 Single-stranded nucleic acid binding protein.       99  7e-20
   sptr|O22385|O22385 Glycine-rich protein.                               99  9e-20
   sw|Q03878|GRP_DAUCA Glycine-rich RNA-binding protein.                  99  1e-19
   sptr|O24184|O24184 Glycine-rich RNA-binding protein.                   99  1e-19

>sptr|O24188|O24188 OsGRP2 (Putative glycine-rich RNA-binding
           protein 2).
          Length = 150

 Score =  179 bits (454), Expect = 5e-44
 Identities = 85/121 (70%), Positives = 101/121 (83%)
 Frame = -3

Query: 751 MAAFNKLGGLLRHSALVSGITGGSSPAVFNAARLMSTKLFIGGLDWGVDDVKLREAFSSF 572
           MAAFNKLG  LRHS L S  + GSSPA+FNAARLMSTKLF+GGL W  +D  L+EAF+SF
Sbjct: 1   MAAFNKLGSFLRHSGLTSSASAGSSPAMFNAARLMSTKLFVGGLSWNTNDDSLKEAFTSF 60

Query: 571 GEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNMANERPAGN 392
           G+VTEARVI DRE+GRSRGFGFV++++ D AK A+ AMDGKE++GR +RVN ANERP GN
Sbjct: 61  GDVTEARVINDRESGRSRGFGFVSFANGDDAKSAMDAMDGKELEGRSIRVNFANERPPGN 120

Query: 391 R 389
           R
Sbjct: 121 R 121


>sptr|O23793|O23793 RNA binding protein.
          Length = 144

 Score =  144 bits (363), Expect = 2e-33
 Identities = 69/117 (58%), Positives = 91/117 (77%), Gaps = 1/117 (0%)
 Frame = -3

Query: 751 MAAFNKLGGLLRHSALVSGITGGSS-PAVFNAARLMSTKLFIGGLDWGVDDVKLREAFSS 575
           MA +NKLGGLLR S   + ++  S  P++ +A R MSTKLF+GGL WG DD  LR+AF++
Sbjct: 1   MAFYNKLGGLLRQSISGNAVSATSPMPSMLDAVRCMSTKLFVGGLSWGTDDQSLRDAFAT 60

Query: 574 FGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNMANER 404
           FG+V +ARVI DR++GRSRGFGFVN+SD + A EAI AMDG+E+ GR +RV++A ER
Sbjct: 61  FGDVVDARVIVDRDSGRSRGFGFVNFSDDECANEAIKAMDGQELQGRNIRVSIAQER 117


>sptrnew|AAN72208|AAN72208 Glycine-rich RNA-binding protein
           AtGRP2-like.
          Length = 158

 Score =  143 bits (361), Expect = 3e-33
 Identities = 73/121 (60%), Positives = 90/121 (74%)
 Frame = -3

Query: 751 MAAFNKLGGLLRHSALVSGITGGSSPAVFNAARLMSTKLFIGGLDWGVDDVKLREAFSSF 572
           MA  NKLGGLLR +   +G    +S  +  + RLMSTKLFIGGL WG DD  LR+AF+ F
Sbjct: 1   MAFCNKLGGLLRQNISSNGNVPVTS--MLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHF 58

Query: 571 GEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNMANERPAGN 392
           G+V +A+VI DRETGRSRGFGFVN++D  AA  AIS MDGKE++GR +RVN AN+RP+  
Sbjct: 59  GDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSAP 118

Query: 391 R 389
           R
Sbjct: 119 R 119


>sw|Q9SVM8|GRP2_ARATH Glycine-rich RNA-binding protein 2,
           mitochondrial precursor (AtGRP2).
          Length = 158

 Score =  143 bits (361), Expect = 3e-33
 Identities = 73/121 (60%), Positives = 90/121 (74%)
 Frame = -3

Query: 751 MAAFNKLGGLLRHSALVSGITGGSSPAVFNAARLMSTKLFIGGLDWGVDDVKLREAFSSF 572
           MA  NKLGGLLR +   +G    +S  +  + RLMSTKLFIGGL WG DD  LR+AF+ F
Sbjct: 1   MAFCNKLGGLLRQNISSNGNVPVTS--MLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHF 58

Query: 571 GEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNMANERPAGN 392
           G+V +A+VI DRETGRSRGFGFVN++D  AA  AIS MDGKE++GR +RVN AN+RP+  
Sbjct: 59  GDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSAP 118

Query: 391 R 389
           R
Sbjct: 119 R 119


>sptr|Q40437|Q40437 RGP-3 (Fragment).
          Length = 144

 Score =  140 bits (354), Expect = 2e-32
 Identities = 68/117 (58%), Positives = 89/117 (76%), Gaps = 1/117 (0%)
 Frame = -3

Query: 751 MAAFNKLGGLLRHSALVSGITGGSS-PAVFNAARLMSTKLFIGGLDWGVDDVKLREAFSS 575
           MA +NKLGGLLR S   + ++  S   ++ +A R MSTKLF+GGL WG DD  LR+AF++
Sbjct: 1   MAFYNKLGGLLRQSISGNAVSATSPMKSMLDAVRCMSTKLFVGGLSWGTDDQSLRDAFAT 60

Query: 574 FGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNMANER 404
           FG+V +ARVI DR++GRSRGFGFVN+SD + A EAI AMDG+E+ GR +RV +A ER
Sbjct: 61  FGDVVDARVIVDRDSGRSRGFGFVNFSDDECANEAIKAMDGQELQGRNIRVRIAQER 117


>sptr|Q9LIS2|Q9LIS2 Glycine-rich RNA binding protein-like
           (AT3g23830/F14O13_2).
          Length = 136

 Score =  138 bits (348), Expect = 1e-31
 Identities = 70/121 (57%), Positives = 88/121 (72%)
 Frame = -3

Query: 751 MAAFNKLGGLLRHSALVSGITGGSSPAVFNAARLMSTKLFIGGLDWGVDDVKLREAFSSF 572
           MA  NKL G+LR    VS  + G   ++  + R MS+KLF+GGL WG DD  L++AF+SF
Sbjct: 1   MAFCNKLSGILRQG--VSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSF 58

Query: 571 GEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNMANERPAGN 392
           GEVTEA VI DRETGRSRGFGFV++S  D+A  AI  MDGKE++GRQ+RVN+A ER +  
Sbjct: 59  GEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAP 118

Query: 391 R 389
           R
Sbjct: 119 R 119


>sptr|Q8LDS0|Q8LDS0 Glycine-rich RNA binding protein, putative.
          Length = 136

 Score =  138 bits (348), Expect = 1e-31
 Identities = 70/121 (57%), Positives = 88/121 (72%)
 Frame = -3

Query: 751 MAAFNKLGGLLRHSALVSGITGGSSPAVFNAARLMSTKLFIGGLDWGVDDVKLREAFSSF 572
           MA  NKL G+LR    VS  + G   ++  + R MS+KLF+GGL WG DD  L++AF+SF
Sbjct: 1   MAFCNKLSGILRQG--VSHSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSF 58

Query: 571 GEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNMANERPAGN 392
           GEVTEA VI DRETGRSRGFGFV++S  D+A  AI  MDGKE++GRQ+RVN+A ER +  
Sbjct: 59  GEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAP 118

Query: 391 R 389
           R
Sbjct: 119 R 119


>sptr|P93486|P93486 Glycine-rich RNA-binding protein PsGRBP.
          Length = 146

 Score =  131 bits (330), Expect = 1e-29
 Identities = 70/122 (57%), Positives = 91/122 (74%), Gaps = 1/122 (0%)
 Frame = -3

Query: 751 MAAFNKLGGLLRHSALVSGITGGSSPAVFNAARLMST-KLFIGGLDWGVDDVKLREAFSS 575
           MA  NKLG LLR  A  S     SS  + N  R MS+ KLFIGGL +GVDD  L++AF+S
Sbjct: 1   MAFCNKLGNLLRQGATQSSHAPVSS--MLNYLRHMSSSKLFIGGLSYGVDDQSLKDAFAS 58

Query: 574 FGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNMANERPAG 395
           +GEV EARVITDR+TGRSRGFGFVN++  ++A  A+SAMDG++++GR +RV+ AN+RP+ 
Sbjct: 59  YGEVVEARVITDRDTGRSRGFGFVNFTSDESATSALSAMDGQDLNGRNIRVSYANDRPSA 118

Query: 394 NR 389
            R
Sbjct: 119 PR 120


>sptr|Q9FNR1|Q9FNR1 Similarity to RNA binding protein
           (AT5g61030/maf19_30).
          Length = 309

 Score =  119 bits (297), Expect = 8e-26
 Identities = 61/122 (50%), Positives = 87/122 (71%), Gaps = 3/122 (2%)
 Frame = -3

Query: 751 MAAFNKLGGLLRHSA--LVSGITGGSSPAVFNAARLMST-KLFIGGLDWGVDDVKLREAF 581
           MA  +K G +L+ +    ++     SSP++F A R MS+ KLFIGG+ + +D+  LREAF
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAF 60

Query: 580 SSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNMANERP 401
           + +GEV + RVI DRETGRSRGFGFV ++ S+AA  AI A+DG+++ GR V+VN AN+R 
Sbjct: 61  TKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRT 120

Query: 400 AG 395
           +G
Sbjct: 121 SG 122


>sptr|Q40436|Q40436 RNA-binding glycine rich protein (RGP-2).
          Length = 259

 Score =  117 bits (292), Expect = 3e-25
 Identities = 62/126 (49%), Positives = 87/126 (69%), Gaps = 6/126 (4%)
 Frame = -3

Query: 751 MAAFNKLGGLL-----RHSALVSGITGGSSPAVFNAARLMST-KLFIGGLDWGVDDVKLR 590
           MA  NK+G +L     RH+ L       S  +++ A R MS+ KLF+GGL WG D+  L+
Sbjct: 1   MAFVNKIGNMLKQIVSRHANLE---LCASRTSLYQAIRSMSSSKLFVGGLSWGTDETSLK 57

Query: 589 EAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNMAN 410
           EAFS  GEV EARVI DR+TGRSRGFGFV+++ ++ A  A++A+DG+++ GRQ+RVN A 
Sbjct: 58  EAFSQHGEVIEARVIMDRDTGRSRGFGFVSFTSTEEAASALTALDGQDLHGRQIRVNYAT 117

Query: 409 ERPAGN 392
           E+  G+
Sbjct: 118 EKLRGS 123


>sptr|Q941H9|Q941H9 RNA-binding protein precursor.
          Length = 277

 Score =  115 bits (289), Expect = 7e-25
 Identities = 58/119 (48%), Positives = 84/119 (70%), Gaps = 3/119 (2%)
 Frame = -3

Query: 751 MAAFNKLGGLLRHSALVSGIT--GGSSPAVFNAARLMST-KLFIGGLDWGVDDVKLREAF 581
           MA FN++G +L+ S           S+ ++F A R MS+ KLF+GGL +G D+  L+EAF
Sbjct: 1   MAFFNRVGSILKQSVSKHSNLELSASNASLFQAIRSMSSSKLFVGGLSYGTDESSLKEAF 60

Query: 580 SSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNMANER 404
           S +G+V EARVI DR+TGRSRGFGF+++  S+ A  A+ AMDG+++ GR++RVN A E+
Sbjct: 61  SQYGDVIEARVIMDRDTGRSRGFGFISFPSSEEAASALQAMDGQDLHGRRIRVNYATEK 119


>sptr|Q8LPB0|Q8LPB0 Glycine-rich RNA-binding protein.
          Length = 155

 Score =  114 bits (285), Expect = 2e-24
 Identities = 60/126 (47%), Positives = 86/126 (68%), Gaps = 5/126 (3%)
 Frame = -3

Query: 751 MAAFNKLGGLLRHSALVSGITGGSS----PAVFNAARLMS-TKLFIGGLDWGVDDVKLRE 587
           MA   +LGGL+R S   + +   SS    PA+F  +R MS +KLF+GGL WG  D  ++E
Sbjct: 1   MAFLAQLGGLVRQSIARNALQRHSSAAAIPAMFLVSRGMSGSKLFVGGLAWGTTDDNIKE 60

Query: 586 AFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNMANE 407
           AFS+FGEVTE ++I DR+TGRSRGFGFV ++    A+ A+ A+DG+++ GR +RVN A +
Sbjct: 61  AFSAFGEVTEVKIICDRDTGRSRGFGFVTFATDQDAEAALQALDGRDLAGRTIRVNYATK 120

Query: 406 RPAGNR 389
           +   +R
Sbjct: 121 QSPQDR 126


>sptr|Q941H8|Q941H8 RNA-binding protein precursor.
          Length = 339

 Score =  113 bits (283), Expect = 3e-24
 Identities = 57/119 (47%), Positives = 82/119 (68%), Gaps = 3/119 (2%)
 Frame = -3

Query: 751 MAAFNKLGGLLRHSA--LVSGITGGSSPAVFNAARLMST-KLFIGGLDWGVDDVKLREAF 581
           MA  NK+G +L+H      +     S+ ++F   R MS+ KLF+GGL +G D+  L+E F
Sbjct: 1   MAFLNKIGNILKHGVGKNTNLELSASNGSLFQTIRSMSSSKLFVGGLSYGTDESSLKETF 60

Query: 580 SSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNMANER 404
           S +GEV EARVI DRETGRSRGFGF+++  S+ A  A+ AMDG+++ GR+++VN A E+
Sbjct: 61  SQYGEVIEARVILDRETGRSRGFGFISFPSSEEATSAMQAMDGQDLHGRRIKVNYATEK 119


>sptr|Q8S652|Q8S652 Putative RNA-binding protein.
          Length = 119

 Score =  105 bits (263), Expect = 7e-22
 Identities = 57/102 (55%), Positives = 70/102 (68%), Gaps = 1/102 (0%)
 Frame = -3

Query: 751 MAAFNKLGGLLRHSALVSGITGGSSPAVFNAARLMST-KLFIGGLDWGVDDVKLREAFSS 575
           MA   K+G L+R SA       GS   +F A R MS+ KLFIGG+ +G DD  L+EAF++
Sbjct: 1   MAFLRKVGNLVRQSA-------GSGSPLFQAVRCMSSSKLFIGGISYGTDDQSLKEAFAN 53

Query: 574 FGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGK 449
           +GEV EARVI DR TGRSRGFGFV Y+ +D A  AI+ MDGK
Sbjct: 54  YGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITGMDGK 95


>sw|P39697|RT19_ARATH 40S ribosomal protein S19, mitochondrial
           precursor.
          Length = 212

 Score =  103 bits (258), Expect = 3e-21
 Identities = 56/118 (47%), Positives = 78/118 (66%)
 Frame = -3

Query: 751 MAAFNKLGGLLRHSALVSGITGGSSPAVFNAARLMSTKLFIGGLDWGVDDVKLREAFSSF 572
           MA   KLGG  +    V         ++  + R MSTKL+IGGL  G D+  L++AFSSF
Sbjct: 1   MAFCTKLGGHWKQGVNVP------VSSMLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSF 54

Query: 571 GEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNMANERPA 398
             VTEARV+T++ TGRSRG+GFVN+   D+A  AISAM+G+E++G  + VN+A + P+
Sbjct: 55  NGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWPS 112


>sptr|O24187|O24187 OsGRP1.
          Length = 160

 Score =  102 bits (253), Expect = 1e-20
 Identities = 47/89 (52%), Positives = 62/89 (69%)
 Frame = -3

Query: 661 AARLMSTKLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDA 482
           AA  +  + F+GGL W  DD  L  AFS+FGE+ E+++I DRETGRSRGFGFV +S   A
Sbjct: 2   AAPDVEYRCFVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTFSSEQA 61

Query: 481 AKEAISAMDGKEIDGRQVRVNMANERPAG 395
            ++AI  M+GKE+DGR + VN A  R +G
Sbjct: 62  MRDAIEGMNGKELDGRNITVNEAQSRRSG 90


>sptr|Q39209|Q39209 RNA binding protein (Fragment).
          Length = 310

 Score =  101 bits (252), Expect = 1e-20
 Identities = 46/80 (57%), Positives = 61/80 (76%)
 Frame = -3

Query: 640 KLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISA 461
           ++++G L W VD+ +L + FS  G+V EARV+ DRETGRSRGFGFV  SD D   EAISA
Sbjct: 226 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 285

Query: 460 MDGKEIDGRQVRVNMANERP 401
           +DG+ ++GR +RVN+A ERP
Sbjct: 286 LDGQNLEGRAIRVNVAEERP 305



 Score = 60.5 bits (145), Expect = 3e-08
 Identities = 35/84 (41%), Positives = 48/84 (57%)
 Frame = -3

Query: 640 KLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISA 461
           KLF+G L + V+   L   F   G V  A VI +RET +SRGFGFV  S  D A+ A+  
Sbjct: 132 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 191

Query: 460 MDGKEIDGRQVRVNMANERPAGNR 389
            +  +++GR + VN A   P G+R
Sbjct: 192 FNRYDLNGRLLTVNKA--APRGSR 213


>sptr|Q94EH5|Q94EH5 AT4g24770/F22K18_30.
          Length = 329

 Score =  101 bits (252), Expect = 1e-20
 Identities = 46/80 (57%), Positives = 61/80 (76%)
 Frame = -3

Query: 640 KLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISA 461
           ++++G L W VD+ +L + FS  G+V EARV+ DRETGRSRGFGFV  SD D   EAISA
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304

Query: 460 MDGKEIDGRQVRVNMANERP 401
           +DG+ ++GR +RVN+A ERP
Sbjct: 305 LDGQNLEGRAIRVNVAEERP 324



 Score = 60.5 bits (145), Expect = 3e-08
 Identities = 35/84 (41%), Positives = 48/84 (57%)
 Frame = -3

Query: 640 KLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISA 461
           KLF+G L + V+   L   F   G V  A VI +RET +SRGFGFV  S  D A+ A+  
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210

Query: 460 MDGKEIDGRQVRVNMANERPAGNR 389
            +  +++GR + VN A   P G+R
Sbjct: 211 FNRYDLNGRLLTVNKA--APRGSR 232


>sw|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplast
           precursor (RNA-binding protein RNP-T) (RNA-binding
           protein 1/2/3) (AtRBP33) (RNA-binding protein cp31).
          Length = 329

 Score =  101 bits (252), Expect = 1e-20
 Identities = 46/80 (57%), Positives = 61/80 (76%)
 Frame = -3

Query: 640 KLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISA 461
           ++++G L W VD+ +L + FS  G+V EARV+ DRETGRSRGFGFV  SD D   EAISA
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304

Query: 460 MDGKEIDGRQVRVNMANERP 401
           +DG+ ++GR +RVN+A ERP
Sbjct: 305 LDGQNLEGRAIRVNVAEERP 324



 Score = 60.5 bits (145), Expect = 3e-08
 Identities = 35/84 (41%), Positives = 48/84 (57%)
 Frame = -3

Query: 640 KLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISA 461
           KLF+G L + V+   L   F   G V  A VI +RET +SRGFGFV  S  D A+ A+  
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210

Query: 460 MDGKEIDGRQVRVNMANERPAGNR 389
            +  +++GR + VN A   P G+R
Sbjct: 211 FNRYDLNGRLLTVNKA--APRGSR 232


>sptr|O22390|O22390 Glycine-rich protein.
          Length = 161

 Score =  101 bits (251), Expect = 2e-20
 Identities = 46/90 (51%), Positives = 63/90 (70%)
 Frame = -3

Query: 661 AARLMSTKLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDA 482
           AA  +  + F+GGL W  DD  L  AFS++GE+ E+++I DRETGRSRGFGFV +S   A
Sbjct: 2   AAPDVEYRCFVGGLAWATDDRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQA 61

Query: 481 AKEAISAMDGKEIDGRQVRVNMANERPAGN 392
            ++AI  M+GKE+DGR + VN A  R +G+
Sbjct: 62  MRDAIEGMNGKELDGRNITVNEAQSRRSGS 91


>sptr|Q9XEL4|Q9XEL4 Glycine-rich RNA-binding protein.
          Length = 155

 Score =  101 bits (251), Expect = 2e-20
 Identities = 45/82 (54%), Positives = 61/82 (74%)
 Frame = -3

Query: 640 KLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISA 461
           + F+GGL W  DD  L+EAFS +GEV E+++I+DRETGRSRGFGFV ++D  + ++AI A
Sbjct: 9   RCFVGGLAWSTDDRSLQEAFSPYGEVVESKIISDRETGRSRGFGFVTFNDEQSMRDAIDA 68

Query: 460 MDGKEIDGRQVRVNMANERPAG 395
           M+GK +DGR + VN A  R  G
Sbjct: 69  MNGKMLDGRSITVNPAQSRGNG 90


>sptr|Q8LPB1|Q8LPB1 Glycine-rich RNA-binding protein.
          Length = 178

 Score =  100 bits (250), Expect = 2e-20
 Identities = 46/83 (55%), Positives = 58/83 (69%)
 Frame = -3

Query: 640 KLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISA 461
           + F+GGL W   D  L EAF  FGEV + +VITDRETGRSRGFGFV ++D ++  EAI  
Sbjct: 6   RCFVGGLAWATTDGSLEEAFRPFGEVVQCKVITDRETGRSRGFGFVTFADENSMNEAIKD 65

Query: 460 MDGKEIDGRQVRVNMANERPAGN 392
           M+GKE+DGR + VN A  R  G+
Sbjct: 66  MNGKELDGRNITVNQAQSRGGGS 88


>sptr|Q8VXC4|Q8VXC4 Glycine rich RNA binding protein.
          Length = 194

 Score =  100 bits (250), Expect = 2e-20
 Identities = 46/89 (51%), Positives = 62/89 (69%)
 Frame = -3

Query: 661 AARLMSTKLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDA 482
           AA  +  + F+GGL W  DD  L  AFS++GE+ E+++I DRETGRSRGFGFV +S   A
Sbjct: 2   AAPDVEYRCFVGGLAWATDDRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQA 61

Query: 481 AKEAISAMDGKEIDGRQVRVNMANERPAG 395
            ++AI  M+GKE+DGR + VN A  R +G
Sbjct: 62  MRDAIEGMNGKELDGRNITVNEAQSRRSG 90


>sptr|Q9C909|Q9C909 Putative RNA-binding protein (At1g74230).
          Length = 289

 Score =  100 bits (248), Expect = 4e-20
 Identities = 53/120 (44%), Positives = 82/120 (68%), Gaps = 1/120 (0%)
 Frame = -3

Query: 751 MAAFNKLGGLLRHSALVSGITGGSSPAVFNAARLMST-KLFIGGLDWGVDDVKLREAFSS 575
           MA  +K+G L   ++  S +T  SS  +  + R MS+ K+F+GG+ +  D+  LREAFS 
Sbjct: 1   MAFLSKVGRLFSQTS--SHVTASSS--MLQSIRCMSSSKIFVGGISYSTDEFGLREAFSK 56

Query: 574 FGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNMANERPAG 395
           +GEV +A++I DRETGRSRGF FV ++ ++ A  A+  +DG+++ GR++RVN A ER +G
Sbjct: 57  YGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATERGSG 115


>sw|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplast
           precursor (CP29B).
          Length = 291

 Score = 99.8 bits (247), Expect = 5e-20
 Identities = 50/112 (44%), Positives = 72/112 (64%), Gaps = 2/112 (1%)
 Frame = -3

Query: 730 GGLLRHSALVSGITGGSSPAVFNAARLM--STKLFIGGLDWGVDDVKLREAFSSFGEVTE 557
           GG   +S+   G  G SS       R +  S ++++G L WGVDD+ L+E FS  G V +
Sbjct: 176 GGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVD 235

Query: 556 ARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNMANERP 401
           A+V+ DR++GRSRGFGFV YS S    +AI +++G ++DGR +RV+ A ERP
Sbjct: 236 AKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERP 287



 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 38/81 (46%), Positives = 45/81 (55%)
 Frame = -3

Query: 640 KLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISA 461
           KLF+G L + VD   L   F   G V    VI D+ TGRSRGFGFV  S  +  + A   
Sbjct: 88  KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147

Query: 460 MDGKEIDGRQVRVNMANERPA 398
            +G EIDGR +RVN A   PA
Sbjct: 148 FNGYEIDGRAIRVN-AGPAPA 167


>sptr|Q41834|Q41834 Nucleic acid-binding protein precursor.
          Length = 303

 Score = 99.4 bits (246), Expect = 7e-20
 Identities = 45/82 (54%), Positives = 61/82 (74%)
 Frame = -3

Query: 646 STKLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAI 467
           S ++++G L W VDD +L E FS  G+V +ARV+ DRETGRSRGFGFV  +  D   +AI
Sbjct: 218 SLRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRETGRSRGFGFVTMASQDELDDAI 277

Query: 466 SAMDGKEIDGRQVRVNMANERP 401
           +A+DG+ +DGR +RVN+A ERP
Sbjct: 278 AALDGQSLDGRALRVNVAEERP 299



 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 33/84 (39%), Positives = 50/84 (59%)
 Frame = -3

Query: 640 KLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISA 461
           K+++G L + VD  +L + F   G V  A VI +RET +SRGFGFV  S  + A++A+  
Sbjct: 126 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEM 185

Query: 460 MDGKEIDGRQVRVNMANERPAGNR 389
               +++GR + VN A   P G+R
Sbjct: 186 FHRYDVNGRLLTVNKA--APRGSR 207


>sptr|Q41518|Q41518 Single-stranded nucleic acid binding protein.
          Length = 167

 Score = 99.4 bits (246), Expect = 7e-20
 Identities = 42/82 (51%), Positives = 60/82 (73%)
 Frame = -3

Query: 640 KLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISA 461
           + F+GGL W  DD  L++AFS +GE+ +A++I DRETGRSRGFGFV +   ++ ++AI  
Sbjct: 7   RCFVGGLAWATDDNNLQQAFSQYGEILDAKIINDRETGRSRGFGFVTFGSEESMRQAIEE 66

Query: 460 MDGKEIDGRQVRVNMANERPAG 395
           M+GKE+DGR + VN A  R +G
Sbjct: 67  MNGKELDGRNITVNEAQSRRSG 88


>sptr|O22385|O22385 Glycine-rich protein.
          Length = 161

 Score = 99.0 bits (245), Expect = 9e-20
 Identities = 45/89 (50%), Positives = 62/89 (69%)
 Frame = -3

Query: 661 AARLMSTKLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDA 482
           AA  +  + F+GGL W  D+  L  AFS++GE+ E+++I DRETGRSRGFGFV +S   A
Sbjct: 2   AAPDVDYRCFVGGLAWATDNRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQA 61

Query: 481 AKEAISAMDGKEIDGRQVRVNMANERPAG 395
            ++AI  M+GKE+DGR + VN A  R +G
Sbjct: 62  MRDAIEGMNGKELDGRNITVNEAQSRRSG 90


>sw|Q03878|GRP_DAUCA Glycine-rich RNA-binding protein.
          Length = 157

 Score = 98.6 bits (244), Expect = 1e-19
 Identities = 41/82 (50%), Positives = 60/82 (73%)
 Frame = -3

Query: 640 KLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISA 461
           + F+GGL W  +D  L +AFS FG++T++++I DRETGRSRGFGFV + D  + ++AI  
Sbjct: 7   RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66

Query: 460 MDGKEIDGRQVRVNMANERPAG 395
           M+G+E+DGR + VN A  R +G
Sbjct: 67  MNGQELDGRNITVNEAQSRGSG 88


>sptr|O24184|O24184 Glycine-rich RNA-binding protein.
          Length = 165

 Score = 98.6 bits (244), Expect = 1e-19
 Identities = 45/89 (50%), Positives = 61/89 (68%)
 Frame = -3

Query: 661 AARLMSTKLFIGGLDWGVDDVKLREAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDA 482
           AA  +  + F+GGL W  D+  L  AFS++GE+ E+++I DRETGRSRGFGFV +S   A
Sbjct: 2   AAPDVDYRCFVGGLAWATDNRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQA 61

Query: 481 AKEAISAMDGKEIDGRQVRVNMANERPAG 395
            ++AI  M GKE+DGR + VN A  R +G
Sbjct: 62  MRDAIEGMSGKELDGRNITVNEAQSRRSG 90


  Database: /db/trembl-ebi/tmp/swall
    Posted date:  Jul 11, 2003  8:27 PM
  Number of letters in database: 374,381,506
  Number of sequences in database:  1,165,242
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 540,156,753
Number of Sequences: 1165242
Number of extensions: 9858764
Number of successful extensions: 34792
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34350
length of database: 374,381,506
effective HSP length: 122
effective length of database: 232,221,982
effective search space used: 48069950274
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)