BLASTX 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131584.2.4
(739 letters)
Database: /db/trembl-ebi/tmp/swall
1,272,877 sequences; 406,886,216 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sptr|Q8RUH0|Q8RUH0 Putative small nuclear ribonucleoprotein D2. 196 3e-49
sptr|Q8L3W7|Q8L3W7 Small nuclear ribonucleoprotein-like protein. 196 3e-49
sptr|O22247|O22247 Small nuclear ribonucleoprotein-like protein ... 195 4e-49
sptrnew|EAA13684|EAA13684 EbiP2741 (Fragment). 180 2e-44
sptrnew|AAH51208|AAH51208 Similar to Small nuclear ribonucleopro... 179 3e-44
sw|P43330|SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 (snRN... 179 3e-44
sw|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm... 179 4e-44
sptr|Q8MUE3|Q8MUE3 Small nuclear ribonucleoprotein D2-like protein. 176 4e-43
sw|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm... 167 2e-40
sw|O14036|SMD2_SCHPO Probable small nuclear ribonucleoprotein Sm... 138 7e-32
sptrnew|EAA20539|EAA20539 Small nuclear ribonucleoprotein. 125 7e-28
sptr|O96265|O96265 Small nuclear ribonucleoprotein. (snRNP family). 122 4e-27
sptrnew|EAA31888|EAA31888 Hypothetical protein. 113 2e-24
sptr|Q9C252|Q9C252 Probable small nuclear ribonucleoprotein chai... 113 2e-24
sw|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 (snRN... 107 2e-22
sptr|Q8LHC2|Q8LHC2 P0458E05.28 protein. 101 9e-21
sptr|Q94B79|Q94B79 Small nuclear ribonucleoprotein-like protein. 83 3e-15
sptr|Q8SR04|Q8SR04 Small nuclear ribonucleoprotein D2. 70 4e-11
sptr|Q9AVX5|Q9AVX5 Small nuclear ribonucleoprotein SM D2. 63 3e-09
sptrnew|AAQ16042|AAQ16042 Small nuclear ribonucleoprotein Sm D2. 58 1e-07
sptr|Q9GYZ4|Q9GYZ4 Sm-D2. 58 1e-07
sptr|Q9U1W8|Q9U1W8 Y62E10A.12 protein. 54 3e-06
sptr|Q9LMN4|Q9LMN4 F16F4.12 protein (Putative Sm protein). 52 1e-05
sw|Q29329|SMD2_PIG Small nuclear ribonucleoprotein Sm D2 (snRNP ... 52 1e-05
sptr|Q9C6K5|Q9C6K5 Sm-like protein. 51 1e-05
sptr|Q86L06|Q86L06 Similar to Arabidopsis thaliana (Mouse-ear cr... 50 3e-05
sptr|Q8IB34|Q8IB34 Ribonucleoprotein, putative. 50 3e-05
sptrnew|AAH54368|AAH54368 1010001J12Rik protein. 50 4e-05
sptrnew|BAB25303|BAB25303 10 day old male pancreas cDNA, RIKEN f... 50 4e-05
sptrnew|BAB22585|BAB22585 Adult male heart cDNA, RIKEN full-leng... 50 4e-05
>sptr|Q8RUH0|Q8RUH0 Putative small nuclear ribonucleoprotein D2.
Length = 109
Score = 196 bits (498), Expect = 3e-49
Identities = 94/105 (89%), Positives = 100/105 (95%)
Frame = +1
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 357
M ++ GK EEEEF+TGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLEN
Sbjct: 5 MEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLEN 64
Query: 358 VREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 492
VREMWTE+PKTGKGKKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 65 VREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109
>sptr|Q8L3W7|Q8L3W7 Small nuclear ribonucleoprotein-like protein.
Length = 105
Score = 196 bits (498), Expect = 3e-49
Identities = 94/105 (89%), Positives = 100/105 (95%)
Frame = +1
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 357
M ++ GK EEEEF+TGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLEN
Sbjct: 1 MEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLEN 60
Query: 358 VREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 492
VREMWTE+PKTGKGKKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61 VREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 105
>sptr|O22247|O22247 Small nuclear ribonucleoprotein-like protein
(At2g47640).
Length = 108
Score = 195 bits (496), Expect = 4e-49
Identities = 94/103 (91%), Positives = 100/103 (97%)
Frame = +1
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
+E+ GK EEEEF+TGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVR
Sbjct: 6 EEDTNGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVR 65
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 492
EMWTE+PKTGKGKKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 66 EMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108
>sptrnew|EAA13684|EAA13684 EbiP2741 (Fragment).
Length = 118
Score = 180 bits (456), Expect = 2e-44
Identities = 85/100 (85%), Positives = 94/100 (94%)
Frame = +1
Query: 193 QAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 372
+ ++EEEEF+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMW
Sbjct: 13 ELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 72
Query: 373 TEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 492
TEIP+TGKGKKK PVNKDRFISKMFLRGDSVI+VLRNP+
Sbjct: 73 TEIPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNPQ 112
>sptrnew|AAH51208|AAH51208 Similar to Small nuclear
ribonucleoprotein Sm.
Length = 118
Score = 179 bits (455), Expect = 3e-44
Identities = 84/96 (87%), Positives = 93/96 (96%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
K+EEEEF+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+
Sbjct: 18 KREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 77
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 78 PKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>sw|P43330|SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 (snRNP
core protein D2) (Sm-D2).
Length = 118
Score = 179 bits (455), Expect = 3e-44
Identities = 84/96 (87%), Positives = 93/96 (96%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
K+EEEEF+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+
Sbjct: 18 KREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 77
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 78 PKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>sw|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2
(snRNP core protein D2) (Sm-D2).
Length = 119
Score = 179 bits (453), Expect = 4e-44
Identities = 84/99 (84%), Positives = 93/99 (93%)
Frame = +1
Query: 193 QAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 372
+ ++EEEEF+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMW
Sbjct: 14 ELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 73
Query: 373 TEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
TE+P+TGKGKKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 74 TELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112
>sptr|Q8MUE3|Q8MUE3 Small nuclear ribonucleoprotein D2-like protein.
Length = 119
Score = 176 bits (445), Expect = 4e-43
Identities = 82/96 (85%), Positives = 92/96 (95%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
++E+EEF+TGPLSVL SVKNNTQVLINCRNNKKLL RV+AFDRHCNMVLENV+EMWTE+
Sbjct: 19 QREQEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEV 78
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
PKTGKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 79 PKTGKGKKKSKPVNKDRYISKMFLRGDSVILVLRNP 114
>sw|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm D2
(snRNP core protein D2) (Sm-D2).
Length = 118
Score = 167 bits (422), Expect = 2e-40
Identities = 79/95 (83%), Positives = 88/95 (92%)
Frame = +1
Query: 205 KEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIP 384
KE+EEF+ GPLS+L SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P
Sbjct: 19 KEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVP 78
Query: 385 KTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
KTGKGKKKA V KDRFISKMFLRGDSVI+V++NP
Sbjct: 79 KTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
>sw|O14036|SMD2_SCHPO Probable small nuclear ribonucleoprotein Sm D2
(snRNP core protein D2) (Sm-D2).
Length = 115
Score = 138 bits (348), Expect = 7e-32
Identities = 70/105 (66%), Positives = 81/105 (77%)
Frame = +1
Query: 175 SMADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 354
S E + + EE EFS GPLSVL +VKN+ QVLINCRNNKKLL RV+AFDRH NMVLE
Sbjct: 10 SELSEIELARLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLE 69
Query: 355 NVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
NV+EMWTE +T G KK +NKDRFISKMFLRGD V++V+R P
Sbjct: 70 NVKEMWTEKKRTASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113
>sptrnew|EAA20539|EAA20539 Small nuclear ribonucleoprotein.
Length = 101
Score = 125 bits (313), Expect = 7e-28
Identities = 61/99 (61%), Positives = 76/99 (76%)
Frame = +1
Query: 196 AGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 375
A ++ + GPL +L VK+N QVLINCRNN+KLLGRV+AFDRHCN++L VRE+W
Sbjct: 6 ANEENRDNPENGPLGLLSECVKDNAQVLINCRNNRKLLGRVKAFDRHCNLLLTEVREIWV 65
Query: 376 EIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 492
EI K K KKK +NKDR+IS +FLRGDSVI++LRNPK
Sbjct: 66 EIIKDKKKKKK---INKDRYISILFLRGDSVILILRNPK 101
>sptr|O96265|O96265 Small nuclear ribonucleoprotein. (snRNP family).
Length = 101
Score = 122 bits (307), Expect = 4e-27
Identities = 58/88 (65%), Positives = 72/88 (81%)
Frame = +1
Query: 229 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKK 408
GPL +L VK+N QVLINCRNN+K+LGRV+AFDRHCN++L VRE+W E+ K K KKK
Sbjct: 17 GPLGLLSECVKDNAQVLINCRNNRKILGRVKAFDRHCNLLLTGVREIWVEVVKDKKKKKK 76
Query: 409 ALPVNKDRFISKMFLRGDSVIIVLRNPK 492
+NKDR+IS +FLRGDSVI++LRNPK
Sbjct: 77 ---INKDRYISILFLRGDSVILILRNPK 101
>sptrnew|EAA31888|EAA31888 Hypothetical protein.
Length = 126
Score = 113 bits (283), Expect = 2e-24
Identities = 55/89 (61%), Positives = 69/89 (77%)
Frame = +1
Query: 187 ENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 366
E + EE EFS GPLS+L +V++++QVLI+ RN +K+L RV+AFDRH NMVLENV+E
Sbjct: 21 EYEVSLLEEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKE 80
Query: 367 MWTEIPKTGKGKKKALPVNKDRFISKMFL 453
MWTE P+ G KK PVNKDRFISKMF+
Sbjct: 81 MWTETPRLANG-KKGKPVNKDRFISKMFV 108
>sptr|Q9C252|Q9C252 Probable small nuclear ribonucleoprotein chain
D2.
Length = 126
Score = 113 bits (283), Expect = 2e-24
Identities = 55/89 (61%), Positives = 69/89 (77%)
Frame = +1
Query: 187 ENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 366
E + EE EFS GPLS+L +V++++QVLI+ RN +K+L RV+AFDRH NMVLENV+E
Sbjct: 21 EYEVSLLEEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKE 80
Query: 367 MWTEIPKTGKGKKKALPVNKDRFISKMFL 453
MWTE P+ G KK PVNKDRFISKMF+
Sbjct: 81 MWTETPRLANG-KKGKPVNKDRFISKMFV 108
>sw|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 (snRNP
core protein D2) (Sm-D2).
Length = 110
Score = 107 bits (267), Expect = 2e-22
Identities = 52/94 (55%), Positives = 70/94 (74%)
Frame = +1
Query: 208 EEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPK 387
EE EF GP+S++ ++ T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE
Sbjct: 22 EEFEFKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--- 78
Query: 388 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
KK +N++RFISK+FLRGDSVI+VL+ P
Sbjct: 79 ----KKGKNVINRERFISKLFLRGDSVIVVLKTP 108
>sptr|Q8LHC2|Q8LHC2 P0458E05.28 protein.
Length = 50
Score = 101 bits (252), Expect = 9e-21
Identities = 48/50 (96%), Positives = 50/50 (100%)
Frame = +1
Query: 343 MVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 492
MVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL+NPK
Sbjct: 1 MVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLKNPK 50
>sptr|Q94B79|Q94B79 Small nuclear ribonucleoprotein-like protein.
Length = 135
Score = 83.2 bits (204), Expect = 3e-15
Identities = 43/77 (55%), Positives = 51/77 (66%)
Frame = +1
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 357
M ++ GK EEEEF+TGPLSVLMMSVKNNTQVLINCRNN+KLLGRVR L+
Sbjct: 5 MEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRLLTGTATWFLKM 64
Query: 358 VREMWTEIPKTGKGKKK 408
+ K K ++K
Sbjct: 65 SEKCGLRFRKPEKERRK 81
Score = 35.8 bits (81), Expect = 0.59
Identities = 24/71 (33%), Positives = 30/71 (42%)
Frame = +2
Query: 299 RSCLAVFVLLIATVTWCSRTCVRCGQRSPXXXXXXXXXXXXXXIDSSVRCSSGATRSS*C 478
R L LL T TW + +CG R IDSS RCS T+S
Sbjct: 45 RKLLGRVRLLTGTATWFLKMSEKCGLRFRKPEKERRKLFLLTEIDSSARCSCVETQSLSS 104
Query: 479 *GTRSDRPTSH 511
GT S+R +S+
Sbjct: 105 SGTPSERSSSY 115
>sptr|Q8SR04|Q8SR04 Small nuclear ribonucleoprotein D2.
Length = 135
Score = 69.7 bits (169), Expect = 4e-11
Identities = 38/92 (41%), Positives = 61/92 (66%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
+KE E GPLS++ ++ VL++ R+N+K+LGRV A+DRH N+++E+ +E+ T
Sbjct: 12 EKETMEMK-GPLSLVRRAMVKMKPVLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTR 70
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 477
K KG+KK R + K+F+RGD+VI+V
Sbjct: 71 GK-NKGRKKRQGCEFSRKLGKVFIRGDTVILV 101
>sptr|Q9AVX5|Q9AVX5 Small nuclear ribonucleoprotein SM D2.
Length = 82
Score = 63.2 bits (152), Expect = 3e-09
Identities = 30/83 (36%), Positives = 54/83 (65%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKA 411
P + V+N+ V+I RNNK+++G++ +D+H N++LENV EI G+ +
Sbjct: 3 PFDYISGCVRNDKSVMIILRNNKRMIGKIINYDKHLNLLLENV----NEIKFVGENFSEL 58
Query: 412 LPVNKDRFISKMFLRGDSVIIVL 480
+ + K +FI K+FLRGD+++++L
Sbjct: 59 IKI-KSKFIPKVFLRGDNIVLIL 80
>sptrnew|AAQ16042|AAQ16042 Small nuclear ribonucleoprotein Sm D2.
Length = 111
Score = 57.8 bits (138), Expect = 1e-07
Identities = 35/88 (39%), Positives = 49/88 (55%)
Frame = +1
Query: 229 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKK 408
GP +L +VKN T+V I R NK L+ V AFD+H N+VL + E+ T +
Sbjct: 32 GPFCLLDSAVKNGTRVFIQSRYNKSLVATVVAFDKHFNLVLRDAVEL-TMVNNE------ 84
Query: 409 ALPVNKDRFISKMFLRGDSVIIVLRNPK 492
K+R I MFLRG SV+ ++R P+
Sbjct: 85 ----QKERSIRNMFLRGASVVFIVRLPQ 108
>sptr|Q9GYZ4|Q9GYZ4 Sm-D2.
Length = 111
Score = 57.8 bits (138), Expect = 1e-07
Identities = 35/88 (39%), Positives = 49/88 (55%)
Frame = +1
Query: 229 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKK 408
GP +L +VKN T+V I R NK L+ V AFD+H N+VL + E+ T +
Sbjct: 32 GPFCLLDSAVKNGTRVFIQSRYNKSLVATVVAFDKHFNLVLRDAVEL-TMVNNE------ 84
Query: 409 ALPVNKDRFISKMFLRGDSVIIVLRNPK 492
K+R I MFLRG SV+ ++R P+
Sbjct: 85 ----QKERSIRNMFLRGASVVFIVRLPQ 108
>sptr|Q9U1W8|Q9U1W8 Y62E10A.12 protein.
Length = 102
Score = 53.5 bits (127), Expect = 3e-06
Identities = 31/82 (37%), Positives = 50/82 (60%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKA 411
PL +L +S+ + +V + RN+++L GR+RAFD+H NMVL V E T + + +
Sbjct: 17 PLDLLRLSL--DERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETIT-TREVDEDTFEE 73
Query: 412 LPVNKDRFISKMFLRGDSVIIV 477
+ R + +F+RGDSVI+V
Sbjct: 74 IYKQTKRVVPMLFVRGDSVILV 95
>sptr|Q9LMN4|Q9LMN4 F16F4.12 protein (Putative Sm protein).
Length = 97
Score = 51.6 bits (122), Expect = 1e-05
Identities = 28/90 (31%), Positives = 55/90 (61%)
Frame = +1
Query: 208 EEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPK 387
EE+ PL ++ +S++ ++ + R++++L G++ AFD+H NM+L +V E+ T I
Sbjct: 4 EEDATVREPLDLIRLSIEE--RIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEI 61
Query: 388 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 477
+ ++ + K R + +F+RGD VI+V
Sbjct: 62 DDETYEEIVRTTK-RTVPFLFVRGDGVILV 90
>sw|Q29329|SMD2_PIG Small nuclear ribonucleoprotein Sm D2 (snRNP
core protein D2) (Sm-D2) (Fragment).
Length = 50
Score = 51.6 bits (122), Expect = 1e-05
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNK 300
K+EEEEF+TGPLSV S K TQVLINCRN K
Sbjct: 18 KREEEEFNTGPLSVXTQSXKTXTQVLINCRNTK 50
>sptr|Q9C6K5|Q9C6K5 Sm-like protein.
Length = 98
Score = 51.2 bits (121), Expect = 1e-05
Identities = 29/90 (32%), Positives = 54/90 (60%)
Frame = +1
Query: 208 EEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPK 387
EEE PL ++ +S+ + ++ + R++++L G++ AFD+H NM+L +V E T +
Sbjct: 4 EEEATVREPLDLIRLSL--DERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEI 61
Query: 388 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 477
+ ++ + K R I +F+RGD VI+V
Sbjct: 62 DDETYEEIVRTTK-RTIEFLFVRGDGVILV 90
>sptr|Q86L06|Q86L06 Similar to Arabidopsis thaliana (Mouse-ear
cress). Sm-like protein.
Length = 98
Score = 50.1 bits (118), Expect = 3e-05
Identities = 27/91 (29%), Positives = 53/91 (58%)
Frame = +1
Query: 205 KEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIP 384
K EE PL ++ +S+ + ++ + R +++L G++ A+D+H NM+L +V E +
Sbjct: 3 KREEGTVEEPLDLIRLSL--DERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVE 60
Query: 385 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 477
K + ++ + N R I +F+RGD VI++
Sbjct: 61 KDEETDEEIIR-NIKRNIKMLFVRGDGVILI 90
>sptr|Q8IB34|Q8IB34 Ribonucleoprotein, putative.
Length = 74
Score = 50.1 bits (118), Expect = 3e-05
Identities = 22/69 (31%), Positives = 43/69 (62%)
Frame = +1
Query: 271 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMF 450
++ + C+ +++L+G++ A+D H NM+L NVRE + + K + +R + +F
Sbjct: 4 EIFLKCKGDRELIGKLDAYDNHLNMILSNVRETY---KYSVKENDEETVKKMERNLDMVF 60
Query: 451 LRGDSVIIV 477
+RGDS+I+V
Sbjct: 61 VRGDSIILV 69
>sptrnew|AAH54368|AAH54368 1010001J12Rik protein.
Length = 102
Score = 49.7 bits (117), Expect = 4e-05
Identities = 31/98 (31%), Positives = 55/98 (56%)
Frame = +1
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
D+ Q EE PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V
Sbjct: 6 DQQQTTNTVEE-----PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVE 58
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 477
E T I + ++ K R I +F+RGD V++V
Sbjct: 59 ETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
>sptrnew|BAB25303|BAB25303 10 day old male pancreas cDNA, RIKEN
full-length enriched library, clone:1810049N07
product:MDS017 homolog.
Length = 102
Score = 49.7 bits (117), Expect = 4e-05
Identities = 31/98 (31%), Positives = 55/98 (56%)
Frame = +1
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
D+ Q EE PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V
Sbjct: 6 DQQQTTNTVEE-----PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVE 58
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 477
E T I + ++ K R I +F+RGD V++V
Sbjct: 59 ETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
>sptrnew|BAB22585|BAB22585 Adult male heart cDNA, RIKEN full-length
enriched library, clone:1010001J12 product:MDS017
homolog.
Length = 102
Score = 49.7 bits (117), Expect = 4e-05
Identities = 31/98 (31%), Positives = 55/98 (56%)
Frame = +1
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
D+ Q EE PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V
Sbjct: 6 DQQQTTNTVEE-----PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVE 58
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 477
E T I + ++ K R I +F+RGD V++V
Sbjct: 59 ETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
Database: /db/trembl-ebi/tmp/swall
Posted date: Sep 26, 2003 8:29 PM
Number of letters in database: 406,886,216
Number of sequences in database: 1,272,877
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 539,709,069
Number of Sequences: 1272877
Number of extensions: 11037079
Number of successful extensions: 31646
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31560
length of database: 406,886,216
effective HSP length: 119
effective length of database: 255,413,853
effective search space used: 32182145478
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)