BLASTX 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.707
(919 letters)
Database: /db/trembl-ebi/tmp/swall
1,272,877 sequences; 406,886,216 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sptr|Q8S0P2|Q8S0P2 Ribosomal protein L28-like. 249 5e-65
sptr|O82204|O82204 Putative ribosomal protein L28. 205 8e-52
sptr|Q9M0E2|Q9M0E2 Hypothetical protein (Putative ribosomal prot... 201 1e-50
sptrnew|EAA33690|EAA33690 Predicted protein. 85 1e-15
sw|O14069|YFF6_SCHPO Probable 60S ribosomal protein C1687.06c. 83 6e-15
sptr|Q8MZI5|Q8MZI5 GH04183p. 82 8e-15
sptrnew|EAA10888|EAA10888 ENSANGP00000014265 (Fragment). 80 3e-14
sw|Q962T2|RL28_SPOFR 60S ribosomal protein L28. 79 7e-14
sw|Q9VZS5|RL28_DROME 60S ribosomal protein L28. 79 1e-13
sptrnew|AAH24395|AAH24395 Ribosomal protein L28. 78 2e-13
sptrnew|BAC36209|BAC36209 10, 11 days embryo whole body cDNA, RI... 78 2e-13
sptrnew|BAB31362|BAB31362 Adult male kidney cDNA, RIKEN full-len... 78 2e-13
sptrnew|BAB28192|BAB28192 11 days embryo whole body cDNA, RIKEN ... 78 2e-13
sw|P41105|RL28_MOUSE 60S ribosomal protein L28. 78 2e-13
sptrnew|AAH55584|AAH55584 Hypothetical protein. 77 3e-13
sptr|Q90YT9|Q90YT9 Ribosomal protein L28. 77 3e-13
sw|P46779|RL28_HUMAN 60S ribosomal protein L28. 77 3e-13
sptrnew|AAH53798|AAH53798 Hypothetical protein. 76 7e-13
sw|Q9GS21|RL28_DICDI 60S ribosomal protein L28. 71 2e-11
sptr|Q9VZS4|Q9VZS4 CG12740 protein. 71 2e-11
sw|P17702|RL28_RAT 60S ribosomal protein L28. 70 4e-11
sw|Q21930|RL28_CAEEL 60S ribosomal protein L28. 57 3e-07
sw|O00822|RL28_TRYCR 60S ribosomal protein L28. 44 0.004
sptr|Q8IHU0|Q8IHU0 Hypothetical protein. 37 0.50
sptr|Q88BQ2|Q88BQ2 Avirulence protein AvrPphE(Pto) (AvrPphE). 35 1.1
sptr|Q93TF2|Q93TF2 Hypothetical 41.4 kDa protein. 35 1.1
sptr|Q17982|Q17982 Hypothetical 70.0 kDa protein. 34 2.5
sptr|Q8G8T8|Q8G8T8 AvrPphEPsmM6. 34 3.2
sw|P56975|NRG3_HUMAN Pro-neuregulin-3 precursor (Pro-NRG3) [Cont... 33 4.2
sptr|O49167|O49167 NADPH HC toxin reductase (Fragment). 33 4.2
>sptr|Q8S0P2|Q8S0P2 Ribosomal protein L28-like.
Length = 145
Score = 249 bits (635), Expect = 5e-65
Identities = 122/144 (84%), Positives = 137/144 (95%), Gaps = 1/144 (0%)
Frame = -1
Query: 814 MATVPGDLIWQVVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVTIQ 635
MAT+P L+W++V+KNNSFLVKQFGNGNAKVQF+KEPNNLYN+HS+KHSGLANKKTVT+Q
Sbjct: 1 MATIPDSLVWELVKKNNSFLVKQFGNGNAKVQFSKEPNNLYNVHSYKHSGLANKKTVTVQ 60
Query: 634 PAA-KDSAVVLSTTKTKKQNAPAKLSHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPAL 458
PA+ K++AVVLSTTKT+KQN PA L HKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPAL
Sbjct: 61 PASGKETAVVLSTTKTEKQNKPASLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPAL 120
Query: 457 ARLSSVYLSLQVAKSGVKKKNRQS 386
ARLS+VY SLQVAKSGVKKKNRQ+
Sbjct: 121 ARLSAVYRSLQVAKSGVKKKNRQA 144
>sptr|O82204|O82204 Putative ribosomal protein L28.
Length = 143
Score = 205 bits (521), Expect = 8e-52
Identities = 100/143 (69%), Positives = 120/143 (83%)
Frame = -1
Query: 814 MATVPGDLIWQVVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVTIQ 635
MATVPG LIW++V+ NN FLVKQFG GN+KVQF+KE NNL N+HS+KHSGLANKKTVTIQ
Sbjct: 1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60
Query: 634 PAAKDSAVVLSTTKTKKQNAPAKLSHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALA 455
A KD AVVL+TTKTKKQN P +KS+++KEF +M+KAV NQV DNYYRPDL K ALA
Sbjct: 61 AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120
Query: 454 RLSSVYLSLQVAKSGVKKKNRQS 386
RLS++ L+VAKSG K++NRQ+
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143
>sptr|Q9M0E2|Q9M0E2 Hypothetical protein (Putative ribosomal protein
L28).
Length = 143
Score = 201 bits (511), Expect = 1e-50
Identities = 98/143 (68%), Positives = 118/143 (82%)
Frame = -1
Query: 814 MATVPGDLIWQVVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVTIQ 635
MATVPG LIW++V++NN FLVKQFG GNAKVQF+KE NNL NI+S+KHSGLANKKTVTIQ
Sbjct: 1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60
Query: 634 PAAKDSAVVLSTTKTKKQNAPAKLSHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALA 455
A KD VVL TTKTK+QN P +KS+++KEF +M+K V NQV DNYYRPDL K ALA
Sbjct: 61 AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120
Query: 454 RLSSVYLSLQVAKSGVKKKNRQS 386
RLS++ L+VAKSG K++NRQ+
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143
>sptrnew|EAA33690|EAA33690 Predicted protein.
Length = 150
Score = 85.1 bits (209), Expect = 1e-15
Identities = 56/142 (39%), Positives = 79/142 (55%), Gaps = 1/142 (0%)
Frame = -1
Query: 814 MATVPGDLIWQVVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVTIQ 635
++ V DLIW++ R +NSFLVK+ G VQF+++P NL N HS K++G N K V +
Sbjct: 3 LSNVSADLIWEITRSHNSFLVKRKSGGG--VQFSRDPLNLTNKHSRKYAGFVNDKAVGVV 60
Query: 634 PAAKDSAVVLSTTKTKKQNAP-AKLSHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPAL 458
P K VV++T K N P A+ + K RK KA+ QV+ YR DL K A+
Sbjct: 61 PGEK-GGVVVTTKKAGSINKPAARYTVAFGANKTARKTYKAIARQVAG--YRSDLLKAAV 117
Query: 457 ARLSSVYLSLQVAKSGVKKKNR 392
AR S++ S + K +K R
Sbjct: 118 ARASAIRRSQRAVKPEPAQKLR 139
>sw|O14069|YFF6_SCHPO Probable 60S ribosomal protein C1687.06c.
Length = 134
Score = 82.8 bits (203), Expect = 6e-15
Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 3/135 (2%)
Frame = -1
Query: 808 TVPGDLIWQVVRKNNSFLVK--QFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVTIQ 635
+V DLIWQV+R NN FLVK +FG +QF +EP N+ ++ + SGL N K V +Q
Sbjct: 2 SVSNDLIWQVIRDNNRFLVKRPEFGG----IQFNREPVNVSGKNAQRFSGLCNDKAVGVQ 57
Query: 634 PAAKDSAVVLSTTKTKKQNAPAKLSHKSVM-RKEFRKMAKAVKNQVSDNYYRPDLTKPAL 458
+ V+++ T K PAKL K V+ RK K++ ++ YR DL K ++
Sbjct: 58 ANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSV 117
Query: 457 ARLSSVYLSLQVAKS 413
AR S++ S + K+
Sbjct: 118 ARASAILSSQRPKKT 132
>sptr|Q8MZI5|Q8MZI5 GH04183p.
Length = 236
Score = 82.4 bits (202), Expect = 8e-15
Identities = 52/140 (37%), Positives = 78/140 (55%)
Frame = -1
Query: 820 REMATVPGDLIWQVVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVT 641
REMAT L W ++R NN+FL+K+ + K F+ EPNNL ++ S+++SG+ +KKT+
Sbjct: 91 REMAT-SSHLNWLIIRNNNAFLLKK---RDVKKPFSTEPNNLASVSSYRYSGIVHKKTLG 146
Query: 640 IQPAAKDSAVVLSTTKTKKQNAPAKLSHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPA 461
+ PAA K K PAK + + + R+ K +KN + + YR DLT+ A
Sbjct: 147 VVPAADKKGFTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAA 206
Query: 460 LARLSSVYLSLQVAKSGVKK 401
L R S+V S + A KK
Sbjct: 207 LRRASAVLRSQKPAPVKGKK 226
>sptrnew|EAA10888|EAA10888 ENSANGP00000014265 (Fragment).
Length = 162
Score = 80.5 bits (197), Expect = 3e-14
Identities = 54/161 (33%), Positives = 83/161 (51%)
Frame = -1
Query: 817 EMATVPGDLIWQVVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVTI 638
E+ L W +VR +N+FL+K+ + + F+ EP NL N+ SF++SGL + KT+TI
Sbjct: 3 EIIMASSHLNWLIVRDHNAFLLKR---RDIRKPFSTEPGNLTNLSSFRYSGLVHHKTITI 59
Query: 637 QPAAKDSAVVLSTTKTKKQNAPAKLSHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPAL 458
PA K V + K N PAK K +++ R+ K + N + N YR DL AL
Sbjct: 60 TPAEK-KGVNFVYNRKKVLNKPAKAPVKVTLKEGPRRTLKKIANMMKANRYRADLRGAAL 118
Query: 457 ARLSSVYLSLQVAKSGVKKKNRQS*ALSLCSVRGHVGARSP 335
R S++ S + K+ K K + A + + G A +P
Sbjct: 119 RRASAILRSQRPTKTR-KGKAGAAPAAATAAAAGTAAAAAP 158
>sw|Q962T2|RL28_SPOFR 60S ribosomal protein L28.
Length = 139
Score = 79.3 bits (194), Expect = 7e-14
Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 2/129 (1%)
Frame = -1
Query: 793 LIWQVVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVTI--QPAAKD 620
L W ++R NN+FLVK+ N K F+KEPNN+ N++S++++GL KK V + P K
Sbjct: 5 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKG 61
Query: 619 SAVVLSTTKTKKQNAPAKLSHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSV 440
VV K K N PAK + + + R+ VK + N+YR DL+K L R S++
Sbjct: 62 FTVVYK--KAKATNKPAKNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAI 119
Query: 439 YLSLQVAKS 413
S + K+
Sbjct: 120 LRSQRPIKA 128
>sw|Q9VZS5|RL28_DROME 60S ribosomal protein L28.
Length = 144
Score = 78.6 bits (192), Expect = 1e-13
Identities = 47/131 (35%), Positives = 73/131 (55%)
Frame = -1
Query: 793 LIWQVVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVTIQPAAKDSA 614
L W ++R NN+FL+K+ + K F+ EPNNL ++ S+++SG+ +KKT+ + PAA
Sbjct: 7 LNWLIIRNNNAFLLKK---RDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKG 63
Query: 613 VVLSTTKTKKQNAPAKLSHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYL 434
K K PAK + + + R+ K +KN + + YR DLT+ AL R S+V
Sbjct: 64 FTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLR 123
Query: 433 SLQVAKSGVKK 401
S + A KK
Sbjct: 124 SQKPAPVKGKK 134
>sptrnew|AAH24395|AAH24395 Ribosomal protein L28.
Length = 137
Score = 77.8 bits (190), Expect = 2e-13
Identities = 46/134 (34%), Positives = 74/134 (55%)
Frame = -1
Query: 793 LIWQVVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVTIQPAAKDSA 614
L W VVR +SFL+K+ K ++ EPNNL +SF+++GL ++KTV ++PAA
Sbjct: 5 LQWMVVRNCSSFLIKR-----NKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 59
Query: 613 VVLSTTKTKKQNAPAKLSHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYL 434
VV+ + Q PA ++ + K R ++++ + N YRPDL A+ R S++
Sbjct: 60 VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAI-- 117
Query: 433 SLQVAKSGVKKKNR 392
L+ K V K+ R
Sbjct: 118 -LRSQKPVVVKRKR 130
>sptrnew|BAC36209|BAC36209 10, 11 days embryo whole body cDNA, RIKEN
full-length enriched library, clone:2810473M21
product:ribosomal protein L28, full insert sequence.
Length = 137
Score = 77.8 bits (190), Expect = 2e-13
Identities = 46/134 (34%), Positives = 74/134 (55%)
Frame = -1
Query: 793 LIWQVVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVTIQPAAKDSA 614
L W VVR +SFL+K+ K ++ EPNNL +SF+++GL ++KTV ++PAA
Sbjct: 5 LQWMVVRNCSSFLIKR-----NKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 59
Query: 613 VVLSTTKTKKQNAPAKLSHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYL 434
VV+ + Q PA ++ + K R ++++ + N YRPDL A+ R S++
Sbjct: 60 VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAI-- 117
Query: 433 SLQVAKSGVKKKNR 392
L+ K V K+ R
Sbjct: 118 -LRSQKPVVVKRKR 130
>sptrnew|BAB31362|BAB31362 Adult male kidney cDNA, RIKEN full-length
enriched library, clone:0610007G19 product:ribosomal
protein L28, full insert sequence.
Length = 137
Score = 77.8 bits (190), Expect = 2e-13
Identities = 46/134 (34%), Positives = 74/134 (55%)
Frame = -1
Query: 793 LIWQVVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVTIQPAAKDSA 614
L W VVR +SFL+K+ K ++ EPNNL +SF+++GL ++KTV ++PAA
Sbjct: 5 LQWMVVRNCSSFLIKR-----NKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 59
Query: 613 VVLSTTKTKKQNAPAKLSHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYL 434
VV+ + Q PA ++ + K R ++++ + N YRPDL A+ R S++
Sbjct: 60 VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAI-- 117
Query: 433 SLQVAKSGVKKKNR 392
L+ K V K+ R
Sbjct: 118 -LRSQKPVVVKRKR 130
>sptrnew|BAB28192|BAB28192 11 days embryo whole body cDNA, RIKEN
full-length enriched library, clone:2700043M16
product:ribosomal protein L28, full insert sequence.
Length = 137
Score = 77.8 bits (190), Expect = 2e-13
Identities = 46/134 (34%), Positives = 74/134 (55%)
Frame = -1
Query: 793 LIWQVVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVTIQPAAKDSA 614
L W VVR +SFL+K+ K ++ EPNNL +SF+++GL ++KTV ++PAA
Sbjct: 5 LQWMVVRNCSSFLIKR-----NKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 59
Query: 613 VVLSTTKTKKQNAPAKLSHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYL 434
VV+ + Q PA ++ + K R ++++ + N YRPDL A+ R S++
Sbjct: 60 VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAI-- 117
Query: 433 SLQVAKSGVKKKNR 392
L+ K V K+ R
Sbjct: 118 -LRSQKPVVVKRKR 130
>sw|P41105|RL28_MOUSE 60S ribosomal protein L28.
Length = 136
Score = 77.8 bits (190), Expect = 2e-13
Identities = 46/134 (34%), Positives = 74/134 (55%)
Frame = -1
Query: 793 LIWQVVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVTIQPAAKDSA 614
L W VVR +SFL+K+ K ++ EPNNL +SF+++GL ++KTV ++PAA
Sbjct: 4 LQWMVVRNCSSFLIKR-----NKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 58
Query: 613 VVLSTTKTKKQNAPAKLSHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYL 434
VV+ + Q PA ++ + K R ++++ + N YRPDL A+ R S++
Sbjct: 59 VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAI-- 116
Query: 433 SLQVAKSGVKKKNR 392
L+ K V K+ R
Sbjct: 117 -LRSQKPVVVKRKR 129
>sptrnew|AAH55584|AAH55584 Hypothetical protein.
Length = 138
Score = 77.4 bits (189), Expect = 3e-13
Identities = 49/134 (36%), Positives = 74/134 (55%)
Frame = -1
Query: 793 LIWQVVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVTIQPAAKDSA 614
L W V+R ++SFL+K+ K ++ EPNNL ++F+ +GL ++KT+ I+PAA
Sbjct: 6 LQWMVIRNSSSFLIKR-----NKQTYSTEPNNLKARNAFRFNGLIHRKTIGIEPAADGKG 60
Query: 613 VVLSTTKTKKQNAPAKLSHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYL 434
VV+ K Q PA K + K R +V+N + N YR DL AL R+S++ L
Sbjct: 61 VVVVLKKRSGQRKPATSYGKITINKNSRATLASVRNIIRKNKYRRDLRMAALRRVSAI-L 119
Query: 433 SLQVAKSGVKKKNR 392
S Q KK++R
Sbjct: 120 SSQKPVVVRKKRSR 133
>sptr|Q90YT9|Q90YT9 Ribosomal protein L28.
Length = 137
Score = 77.4 bits (189), Expect = 3e-13
Identities = 48/134 (35%), Positives = 70/134 (52%)
Frame = -1
Query: 793 LIWQVVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVTIQPAAKDSA 614
L W V+R N+SFL+K+ G ++ EPNNL ++F+ +GL ++KTV ++ AA
Sbjct: 5 LQWMVIRNNSSFLIKRNGQ-----TYSTEPNNLKARNAFRFNGLIHRKTVGVEQAADGKG 59
Query: 613 VVLSTTKTKKQNAPAKLSHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYL 434
VV+ K PAK K + K R ++N + N YR DL AL R S++
Sbjct: 60 VVIILKKRAGHRKPAKAYEKITINKNSRTTLNRLRNIIRKNKYRKDLRMAALRRASAI-- 117
Query: 433 SLQVAKSGVKKKNR 392
L+ K V KK R
Sbjct: 118 -LKSQKPVVVKKKR 130
>sw|P46779|RL28_HUMAN 60S ribosomal protein L28.
Length = 136
Score = 77.0 bits (188), Expect = 3e-13
Identities = 42/121 (34%), Positives = 68/121 (56%)
Frame = -1
Query: 793 LIWQVVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVTIQPAAKDSA 614
L W VVR +SFL+K+ K ++ EPNNL +SF+++GL ++KTV ++PAA
Sbjct: 4 LQWMVVRNCSSFLIKR-----NKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 58
Query: 613 VVLSTTKTKKQNAPAKLSHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYL 434
VV+ + Q PA ++ + K R ++++ + N YRPDL A+ R S++
Sbjct: 59 VVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 118
Query: 433 S 431
S
Sbjct: 119 S 119
>sptrnew|AAH53798|AAH53798 Hypothetical protein.
Length = 137
Score = 75.9 bits (185), Expect = 7e-13
Identities = 50/134 (37%), Positives = 73/134 (54%)
Frame = -1
Query: 793 LIWQVVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVTIQPAAKDSA 614
L W +VR +SF+VK+ N +V F+ EPNNL +SF+++G +KKTV ++PAA
Sbjct: 5 LQWMIVRNCSSFIVKR----NHQV-FSTEPNNLKARNSFRYNGPIHKKTVGVEPAADGKG 59
Query: 613 VVLSTTKTKKQNAPAKLSHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYL 434
V++ K Q PA K + K R +V++ + N YR DL AL R S++
Sbjct: 60 VIVVMKKRAGQRKPATSYEKITINKNSRSTLSSVRHIIRKNNYRKDLRMAALRRASAI-- 117
Query: 433 SLQVAKSGVKKKNR 392
L+ K V KK R
Sbjct: 118 -LKSQKPVVVKKKR 130
>sw|Q9GS21|RL28_DICDI 60S ribosomal protein L28.
Length = 132
Score = 71.2 bits (173), Expect = 2e-11
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Frame = -1
Query: 796 DLIWQVVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVTIQPAAKDS 617
DL+W +++KNN+FL G + + EP NL N +S K+SGLA + T+ + AA +
Sbjct: 4 DLVWSIIKKNNAFLKSSHG-----LTLSAEPGNLRNKNSLKYSGLARRTTIDV--AAVNG 56
Query: 616 AVVLSTTKTKKQNAPAKLSHKSVMRK-EFRKMAKAVKNQVSDNYYRPDLTKPALARLSSV 440
VV+S+ KK PA+ + RK A+ VK + Y P+L AL RL V
Sbjct: 57 KVVVSSKIVKKAAFPAQSKKTTTFSTVNTRKTARFVKTLATQ--YAPELRAAALGRLHRV 114
Query: 439 YLSLQVAKSGVKKKNRQS 386
+L+ AK +K +++
Sbjct: 115 QSALRSAKKAAARKAKKN 132
>sptr|Q9VZS4|Q9VZS4 CG12740 protein.
Length = 165
Score = 70.9 bits (172), Expect = 2e-11
Identities = 39/113 (34%), Positives = 64/113 (56%)
Frame = -1
Query: 793 LIWQVVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVTIQPAAKDSA 614
L W ++R NN+FL+K+ + K F+ EPNNL ++ S+++SG+ +KKT+ + PAA
Sbjct: 7 LNWLIIRNNNAFLLKK---RDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKG 63
Query: 613 VVLSTTKTKKQNAPAKLSHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALA 455
K K PAK + + + R+ K +KN + + YR DLT+ +A
Sbjct: 64 FTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQVIMA 116
>sw|P17702|RL28_RAT 60S ribosomal protein L28.
Length = 136
Score = 70.1 bits (170), Expect = 4e-11
Identities = 43/134 (32%), Positives = 71/134 (52%)
Frame = -1
Query: 793 LIWQVVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVTIQPAAKDSA 614
L W VVR +SFL+K+ K ++ EPNNL +SF+++GL ++KTV ++
Sbjct: 4 LQWMVVRNCSSFLIKR-----NKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGKG 58
Query: 613 VVLSTTKTKKQNAPAKLSHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYL 434
VV+ + Q PA ++ + K R ++++ + N YRPDL A+ R S++
Sbjct: 59 VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAI-- 116
Query: 433 SLQVAKSGVKKKNR 392
L+ K V K+ R
Sbjct: 117 -LRSQKPVVVKRKR 129
>sw|Q21930|RL28_CAEEL 60S ribosomal protein L28.
Length = 126
Score = 57.4 bits (137), Expect = 3e-07
Identities = 46/131 (35%), Positives = 68/131 (51%)
Frame = -1
Query: 793 LIWQVVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVTIQPAAKDSA 614
L+WQV+R N++FL Q G G +F+ E NL ++S K+SGLANK + + AAK
Sbjct: 5 LVWQVIRNNSAFLRTQRGIGK---RFSTEKFNLKKVNSPKYSGLANKHAIDVSAAAK--G 59
Query: 613 VVLSTTKTKKQNAPAKLSHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYL 434
VV+ST K + A K+V K A +++ N K A R +++
Sbjct: 60 VVVSTKNEKGRPA------KAVTTSTLSKTPVASVRRLAKNAGFNKFNKLAQRRAAAIVR 113
Query: 433 SLQVAKSGVKK 401
S QV K+ V+K
Sbjct: 114 S-QVKKAKVQK 123
>sw|O00822|RL28_TRYCR 60S ribosomal protein L28.
Length = 146
Score = 43.5 bits (101), Expect = 0.004
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 3/140 (2%)
Frame = -1
Query: 796 DLIWQVVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVTIQPAAKDS 617
DL W +VR+N+ FL K+ G ++ + +P N + +H+G N K ++ K
Sbjct: 6 DLQWLLVRQNSKFLQKRNG-----IRLSSDPFNNNANWTKRHAGFLNTKAAVVK--TKGD 58
Query: 616 AVVLSTTKTKKQNAPAKLSHKSVMRK--EFRKMAKAVKNQVSDNYYRPDLTKPALARLSS 443
++++T K N P + K+VM E ++KAV RPDL A R
Sbjct: 59 RILVTTKDGKAGNKPKSMYKKAVMDAGVEASVVSKAVA------AVRPDLASIASRRARK 112
Query: 442 VYLSLQ-VAKSGVKKKNRQS 386
+ +L+ + K +K R S
Sbjct: 113 MASTLEHMKKVRAARKERSS 132
>sptr|Q8IHU0|Q8IHU0 Hypothetical protein.
Length = 127
Score = 36.6 bits (83), Expect = 0.50
Identities = 23/79 (29%), Positives = 37/79 (46%)
Frame = -1
Query: 814 MATVPGDLIWQVVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNIHSFKHSGLANKKTVTIQ 635
M+ V L+W++ RK+N F+ K K F +P N+ ++ SGL + +
Sbjct: 1 MSNVSNALVWELTRKSNCFIKK--NKAGKKGVFLCDPLNVNYKNTPSSSGLVKSNSTNV- 57
Query: 634 PAAKDSAVVLSTTKTKKQN 578
KD VV S +K+ N
Sbjct: 58 -TLKDGKVVFSVKTSKESN 75
>sptr|Q88BQ2|Q88BQ2 Avirulence protein AvrPphE(Pto) (AvrPphE).
Length = 384
Score = 35.4 bits (80), Expect = 1.1
Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Frame = -1
Query: 811 ATVPGDLIWQVVRKNNS----FLVKQFGNGNA----KVQFTKEPNNLYNIHSFKHSGLAN 656
A+ D +W ++ S ++ + NG+A +F K N + +F S A
Sbjct: 212 ASTEEDHVWAETDESQSGTSTIVMDPWSNGSAIFAEDSRFAKNRNAVERTDTFNLSTAAE 271
Query: 655 KKTVTIQPAAKDSAVVLSTTKTKKQNAPAKLSHKSVMRKEFRK----MAKAVKNQVSDNY 488
+T + A K A+ TT+ +K+ A + + +R + A +VSD
Sbjct: 272 AGKITRETAEK--ALTQVTTRLQKRLADQQEQVSPIKSGRYRPEKSVLDDAFVRRVSDKL 329
Query: 487 YRPDLTKPALARLSSVYLSLQVAKSGVKKKNRQS 386
PDL + + +V +++ + GVK RQ+
Sbjct: 330 TSPDLRRALQVDIEAVGVAMSLGTKGVKDATRQA 363
>sptr|Q93TF2|Q93TF2 Hypothetical 41.4 kDa protein.
Length = 384
Score = 35.4 bits (80), Expect = 1.1
Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Frame = -1
Query: 811 ATVPGDLIWQVVRKNNS----FLVKQFGNGNA----KVQFTKEPNNLYNIHSFKHSGLAN 656
A+ D +W ++ S ++ + NG+A +F K N + +F S A
Sbjct: 212 ASTEEDHVWAETDESQSGTSTIVMDPWSNGSAIFAEDSRFAKNRNAVERTDTFNLSTAAE 271
Query: 655 KKTVTIQPAAKDSAVVLSTTKTKKQNAPAKLSHKSVMRKEFRK----MAKAVKNQVSDNY 488
+T + A K A+ TT+ +K+ A + + +R + A +VSD
Sbjct: 272 AGKITRETAEK--ALTQVTTRLQKRLADQQEQVSPIKSGRYRPEKSVLDDAFVRRVSDKL 329
Query: 487 YRPDLTKPALARLSSVYLSLQVAKSGVKKKNRQS 386
PDL + + +V +++ + GVK RQ+
Sbjct: 330 TSPDLRRALQVDIEAVGVAMSLGTKGVKDATRQA 363
>sptr|Q17982|Q17982 Hypothetical 70.0 kDa protein.
Length = 661
Score = 34.3 bits (77), Expect = 2.5
Identities = 35/151 (23%), Positives = 54/151 (35%), Gaps = 6/151 (3%)
Frame = -3
Query: 779 CEEEQLLPCEAVRQRQCQGAVHQGAEQPLQHPLLQTLGFGEQEDCDDPASCKGLGCGPLY 600
C + + C+ +Q Q + +QP Q+ +Q Q+ C C C
Sbjct: 511 CVQACIPSCQQTCGQQAQPVIV--VQQPQQNNCVQACQPQCQQTCGSNVQCVS-AC---- 563
Query: 599 YQDQEAERTC--EAQPQVCDAQGVPQDGQGCEKPG*XXXXXXXXXXXXXXXAELGVPQ-P 429
+++C + Q QV Q P GQ C+ P VPQ
Sbjct: 564 --QNSCQQSCGNQQQQQVIVVQSSPMCGQACQAPPVLQC----------------VPQCQ 605
Query: 428 PGCQVRCQEEEQAVLSAKFVFCQ---GACWC 345
P CQ C ++ Q + + CQ G+C C
Sbjct: 606 PSCQPSCMQQYQFIQAPAITMCQQSGGSCGC 636
>sptr|Q8G8T8|Q8G8T8 AvrPphEPsmM6.
Length = 384
Score = 33.9 bits (76), Expect = 3.2
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 12/154 (7%)
Frame = -1
Query: 811 ATVPGDLIWQVVRKNNS----FLVKQFGNGNA----KVQFTKEPNNLYNIHSFKHSGLAN 656
A+ D +W ++ S ++ NG+A +F K N + +F S A
Sbjct: 212 ASTEEDHVWAETDESQSGTSTIVMDPRSNGSAIFAEDSRFAKNRNAVERTDTFNLSTAAE 271
Query: 655 KKTVTIQPAAKDSAVVLSTTKTKKQNAPAKLSHKSVMRKEFRK----MAKAVKNQVSDNY 488
+T + A K A+ TT+ +K+ A + + +R + A +VSD
Sbjct: 272 AGKITRETAEK--ALTQVTTRLQKRLADQQEQVSPIKSGRYRPEKSVLDDAFVRRVSDKL 329
Query: 487 YRPDLTKPALARLSSVYLSLQVAKSGVKKKNRQS 386
PDL + + +V +++ + GVK RQ+
Sbjct: 330 TSPDLRRALQVDIEAVGVAMSLGTKGVKDATRQA 363
>sw|P56975|NRG3_HUMAN Pro-neuregulin-3 precursor (Pro-NRG3)
[Contains: Neuregulin-3 (NRG- 3)].
Length = 720
Score = 33.5 bits (75), Expect = 4.2
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Frame = +1
Query: 730 HCRCRTASQGRSCSSSQPAR----SDPLERLPFPF-AGEEVPRRRLALFLCSWVGVAATG 894
HCRC+ QG C P SDP + L F EEV +R++ C G+ G
Sbjct: 316 HCRCKEGYQGVRCDQFLPKTDSILSDPTDHLGIEFMESEEVYQRQVLSISCIIFGIVIVG 375
>sptr|O49167|O49167 NADPH HC toxin reductase (Fragment).
Length = 301
Score = 33.5 bits (75), Expect = 4.2
Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Frame = +1
Query: 682 SGCCRGCSAPW*TAPWHCRCRTASQGRSCSSSQPAR--SDPLERLPFPFAGEEVPRRR 849
SGCCR CSAP R C+S+ PAR S P P A PR R
Sbjct: 239 SGCCRACSAP---------------SRWCTSTTPARRSSSAWSARPSPAASSAPPRTR 281
Database: /db/trembl-ebi/tmp/swall
Posted date: Sep 26, 2003 8:29 PM
Number of letters in database: 406,886,216
Number of sequences in database: 1,272,877
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 687,031,864
Number of Sequences: 1272877
Number of extensions: 14973629
Number of successful extensions: 41789
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41741
length of database: 406,886,216
effective HSP length: 122
effective length of database: 251,595,222
effective search space used: 46041925626
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)